Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0010113

Physical Location & Seq

Genomic Coordinates Reverse (-)

41351365 .. 41365019

Gene Structure 13655 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG347800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2817 bp

ATGGCGGAGGTGTCGATGTGTAGGAGGAGCAGCCTGAGTCCGGATGAAGAGAGGATTTTGATAAAAGACATTGCTTTGGCTGCCGAAGCCAAATCCAAAGAGGGCGATACCTTCTTCTTGATTACCCAAAGATGGTGGCAACATTGGATTGATTATGTGAACCAAGAACAACAGCCCGACGTCTCAGAGCATTGTGATTTGGCTGATTCAAGTAGCTTCAAGAGGCCTGCTGGCATTGATAATTCCGATTTGATATCCGACGACGCCATTGAGATACAGGATACTTTATTAGAAGGCCGTGACTATGTGTTGCTCCCCCAACAAGTTTGGAACCAGTTGCATACATGGTATGGAGGTGGGCCAACATTACCCAGGAGAGTCATTAGTTCAGGTCCTTCTCACACAGAGATGGCTGTTGAAGTCTACCCTCTGCGTCTCCAATTGCTTGTGGTGCCAAAAGGCGGCCGCTCGACTATAAGAATAAGCAAGAAAGAAACCATTGGAGAGCTTCACAGAAGAGCTTGTGAAATCTTTGATCTTAGCCCGGAACAAGTATCCATTTGGGATTTCTATGGACGCAAGCAACATGCCCTCATGACCGACATTGATAAAACACTTGATGATGCGAATATACAAATGGACCAGGATATTCTGGTGGAGGTCCTTAGTCCTGACAATGGTACGAGACCGAGTGGATACACAAGTTCTGTTCGTTACGATGGATCTTTAGAAAAGGAAGCTGCCTCAGTTCTTGTAGAGCCTTCTAAGTCAAGCTTGTCGATTGCTGGAGGTTTATCTGCAAGCAAGGGTGCATCAAGAAGCTATAACACAGAGCTTGCACAAAGTCAAAGCCTGACTTCAGTTAGAGAATTGGATACTACTTATGGGACAATCGGTGTTAGTACAAGAGGTTCGTCTGGTGGTTTGACTGGGTTGCAGAACCTAGGGAATACTTGTTTTATGAACAGTGCTATACAATGCCTTGTTCATACACCAGAGTTCGCTAGATACTTTCGGGAAGATTATCATCAAGAGATAAACTGGGAAAACACTCTGGGTATGCGCGGTGAGCTAGCTCTAGCATTCGGCGAATTACTGCGGAAGCTTTGGGCACCCGGACGAACACCAGTTGCTCCTCGACCTTTTAAAACAAAACTTGCTCGTTTTGCCCCCCAATTCAGTGGTTACAATCAACATGATTCTCAGGAACTTTTGGCTTTTTTGCTAGATGGTCTTCATGAAGATCTGAATCGTGTGAAACAGAAACCTTATATAAAATCTAAAGATGCTGATGGTCGGCCTGATGAAGAAGTTGCTGATGAATATTGGGCAAACCACATTGCTCGTAATGATTCCATAATCGTCGATGTATGCCAAGGCCAATACAAATCAACTTTGGTTTGCCCCATTTGTAACAAAGTCTCTGTTACATTTGATCCCTTCATGTACCTATCATTGCCCCTGCAGTCCACCACAACTAGAACAATGACAGTAACAGTCTTTGCATGCAATGGAAGTGCGTTGCCATCTGCTTACACTGTTACAGTTCCAAAACAGGGACGTTGCCGGGACTTGATCCAGGCACTTAGCAATGCTAGCTCTGTGAAGCACAGTGAGAGGCTTTTGCTTGTTGAGATACAAAACCACATGATTCAGCGATTTCTGGAAGACCCATTAATATTATTATCTACCATCAAAGATGATGATCATCTTGCTGCTTACAAGGTTCAAAAGTCGGCGAAGAACACAAAATATCTTCAGTTGATACACCGTCGTAAGGACCAAGGAACTAGTGATGGCCAGATCACATCAGGATGGCTACCTTATGGAACTCCTCTTCTGTCGGCTATCTCATGTGATGATGAAATCACAAGAGGCAACATACAGAACATGGTTCATACAATGCTTTCTCCAATGCTAAGAACTGAGAGTTTGGATCATACTGATATATCTGGTGCAAGATCTGCAATAGCGGCATCAAACCCCTCTGGAAACTTGCGTGGTGAAGCATGTACTGATTCCGCTATATCCAATTCAATGAATAATGATATCACCAGTTCTAAGCCAGTGAAATCACTAAAGTTGTCTCTTCAGTTGGTGGATGAAAGTAACGCATGTATTGATCTCTCAGTGGGGGAAGAGAAAGCTATCACATTGCCTTCGGCATCAACATCAATACTAGTATATGCAGATTGGTCACAGAAGCTTTTAGATAAATATCATACCCATTATCTGGAAAACTTGCCAGAAGTTTTTAAGTATGGACCTGTAACAAAGAAAGCCCGCACTGAACCTCTCTCCTTGTACACTTGCCTTGAAGCATTTCTACGTGAAGAACCACTGGTGCCTGAAGATATGTGGTACTGTCCCCAGTGCAAGGAGCGGCGACAAGCAAGTAAAAAGCTAGATCTTTGGAGGCTTCCCGAAGTGTTAGTCATCCATCTGAAGAGGTTCTCGTACAGCAGGTCAATGAAGCATAAACTGGAAACATTTGTCAACTTTCCCATTCATGACTTTGATCTAACCAATTACATTGCTCACAAAAGCAACTCTGGACATCAGCTTTACGAACTCTATGCTTTGACCAATCATTATGGTAGCATGGGTAGTGGGCATTACACTGCACATATCAAGCTTCTTGATGAGAACAGATGGTATAGTTTTGATGACAGTCATATATCACCCATAAATGAAGAAGATGTGAAGTCAGCTGCAGCATATGTACTGTTTTATCGCCGGGTAAAGAGTGAAGATTCCTTTGTTAGCAATGGAGTCCTATCCTGTGGAGGTGACAACAAAGTTGCCTCACACAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0019538 GO:0019941 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0051603 GO:0071704 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04137 map04137

Pfam Domains

Protein Families

DUSP UCH USP7_C2

Protein Analysis

938

Amino Acids

105.26

Weight (kDa)

5.92

Isoelectric Point (pI)

49.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUSP	PF06337	35 - 128	3.1e-20	DUSP domain
Ubiquitin_UBP8	PF25242	147 - 198	5.8e-10	UBP8-like, ubiquitin-like domain
UCH	PF00443	310 - 911	5.1e-78	Ubiquitin carboxyl-terminal hydrolase
UCH_1	PF13423	760 - 893	6.8e-07	Ubiquitin carboxyl-terminal hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010113)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40930 AT2G40930
fragaria_vesca	FvH4_1g29170 FvH4_1g29170
malus_domestica	MD17G1207100.v1.1
prunus_persica	Prupe.7G027100_v2.0.a1 Prupe.7G027100_v2.0.a1 Prupe.7G027100_v2.0.a1 Prupe.7G027100_v2.0.a1 Prupe.7G027100_v2.0.a1 Prupe.7G027100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0494551
rosa_laevigata	RLG00000022671
rosa_multiflora	Rmu_sc0000152.1_g000004
rosa_roxburghii	Rroxscaffold_6G00391080
rosa_rugosa	Rorug03G0265600
rosa_samantha	Rh3AG315800 Rh3BG351000 Rh3CG347800 Rh3DG350300
rosa_wichuraiana	Rw3G027570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	183
Acc36I	ACCTGC	1 cut(s)	2454
AccB1I	GGYRCC	3 cut(s)	451, 1111, 2344
AccB7I	CCANNNNNTGG	1 cut(s)	2233
AccBSI	CCGCTC	2 cut(s)	468, 2383
AccI	GTMKAC	1 cut(s)	423
AccII	CGCG	1 cut(s)	1065
AccIII	TCCGGA	1 cut(s)	40
AciI	CCGC	9 cut(s)	5, 462, 466, 1065, 1099, 1973, 2022, 2284, 2383
AclWI	GGATC	4 cut(s)	730, 1430, 1570, 1944
AcoI	YGGCCR	2 cut(s)	463, 1798
AcuI	CTGAAG	5 cut(s)	843, 1742, 2075, 2370, 2465
AcyI	GRCGYC	2 cut(s)	180, 264
AfaI	GTAC	8 cut(s)	682, 904, 1448, 2014, 2306, 2363, 2459, 2724
AfiI	CCNNNNNNNGG	8 cut(s)	40, 132, 461, 677, 1556, 1777, 2233, 2377
AgsI	TTSAA	6 cut(s)	210, 220, 419, 1730, 2037, 2318
AhlI	ACTAGT	2 cut(s)	1790, 2179
AjnI	CCWGG	3 cut(s)	371, 642, 1578
Alw26I	GTCTC	5 cut(s)	187, 440, 679, 1426, 2091
AlwI	GGATC	4 cut(s)	730, 1430, 1570, 1944
Aor13HI	TCCGGA	1 cut(s)	40
AoxI	GGCC	7 cut(s)	224, 295, 359, 463, 1298, 1378, 1798
ApeKI	GCWGC	6 cut(s)	30, 80, 740, 1715, 2711, 2714
ArsI	GACNNNNNNTTYG	2 cut(s)	2418, 2450
AseI	ATTAAT	1 cut(s)	1676
Asp700I	GAANNNNTTC	2 cut(s)	2322, 2450
AspA2I	CCTAGG	1 cut(s)	943
AspLEI	GCGC	1 cut(s)	1065
AspS9I	GGNCC	6 cut(s)	359, 392, 640, 661, 1780, 2264
AsuC2I	CCSGG	4 cut(s)	545, 1116, 1568, 2738
AsuHPI	GGTGA	5 cut(s)	1079, 2015, 2044, 2673, 2801
AsuNHI	GCTAGC	2 cut(s)	1072, 1595
AvaII	GGWCC	5 cut(s)	392, 640, 661, 1780, 2264
AvrII	CCTAGG	1 cut(s)	943
BaeGI	GKGCMC	1 cut(s)	1114
BaeI	ACNNNNGTAYC	2 cut(s)	688, 721
BalI	TGGCCA	1 cut(s)	1800
BanI	GGYRCC	3 cut(s)	451, 1111, 2344
BarI	GAAGNNNNNNTAC	2 cut(s)	2310, 2342
BbsI	GAAGAC	2 cut(s)	1226, 1674
BbvI	GCAGC	6 cut(s)	42, 67, 727, 1702, 2698, 2726
BceAI	ACGGC	1 cut(s)	282
BcgI	CGANNNNNNTGC	2 cut(s)	2558, 2592
BciT130I	CCWGG	3 cut(s)	373, 644, 1580
BciVI	GTATCC	4 cut(s)	274, 565, 689, 868
BclI	TGATCA	1 cut(s)	1705
BcnI	CCSGG	4 cut(s)	545, 1116, 1568, 2738
BcoDI	GTCTC	5 cut(s)	187, 440, 679, 1426, 2091
BcuI	ACTAGT	2 cut(s)	1790, 2179
BfmI	CTRYAG	2 cut(s)	1463, 2712
BfuAI	ACCTGC	1 cut(s)	2454
BfuI	GTATCC	4 cut(s)	274, 565, 689, 868
BglII	AGATCT	3 cut(s)	1243, 1961, 2407
BlnI	CCTAGG	1 cut(s)	943
Bme1390I	CCNGG	7 cut(s)	373, 545, 644, 1116, 1568, 1580, 2738
Bme18I	GGWCC	5 cut(s)	392, 640, 661, 1780, 2264
BmgT120I	GGNCC	6 cut(s)	359, 392, 640, 661, 1780, 2264
BmiI	GGNNCC	4 cut(s)	332, 453, 1113, 2346
BmrFI	CCNGG	7 cut(s)	373, 545, 644, 1116, 1568, 1580, 2738
BmrI	ACTGGG	3 cut(s)	939, 1051, 2365
BmsI	GCATC	5 cut(s)	613, 821, 1276, 1985, 2174
BmtI	GCTAGC	2 cut(s)	1076, 1599
BmuI	ACTGGG	3 cut(s)	939, 1051, 2365
BpiI	GAAGAC	2 cut(s)	1226, 1674
BpmI	CTGGAG	1 cut(s)	807
BpuMI	CCSGG	4 cut(s)	545, 1116, 1568, 2738
BsaAI	YACGTR	1 cut(s)	2330
BsaBI	GATNNNNATC	5 cut(s)	1026, 1248, 1704, 1707, 2217
BsaHI	GRCGYC	2 cut(s)	180, 264
BsaI	GGTCTC	1 cut(s)	679
BsaJI	CCNNGG	4 cut(s)	371, 943, 1375, 1783
BsaWI	WCCGGW	1 cut(s)	40
Bsc4I	CCNNNNNNNGG	8 cut(s)	40, 132, 461, 677, 1556, 1777, 2233, 2377
Bse1I	ACTGG	9 cut(s)	334, 934, 1046, 1127, 2055, 2066, 2346, 2371, 2487
Bse3DI	GCAATG	8 cut(s)	69, 1338, 1454, 1516, 1597, 2153, 2532, 2773
Bse8I	GATNNNNATC	5 cut(s)	1026, 1248, 1704, 1707, 2217
BseAI	TCCGGA	1 cut(s)	40
BseBI	CCWGG	3 cut(s)	373, 644, 1580
BseDI	CCNNGG	4 cut(s)	371, 943, 1375, 1783
BseGI	GGATG	4 cut(s)	49, 1820, 2107, 2436
BseJI	GATNNNNATC	5 cut(s)	1026, 1248, 1704, 1707, 2217
BseLI	CCNNNNNNNGG	8 cut(s)	40, 132, 461, 677, 1556, 1777, 2233, 2377
BseMI	GCAATG	8 cut(s)	69, 1338, 1454, 1516, 1597, 2153, 2532, 2773
BseMII	CTCAG	6 cut(s)	26, 198, 759, 1217, 1917, 2142
BseNI	ACTGG	9 cut(s)	334, 934, 1046, 1127, 2055, 2066, 2346, 2371, 2487
BseRI	GAGGAG	3 cut(s)	40, 1125, 1824
BseSI	GKGCMC	1 cut(s)	1114
BseX3I	CGGCCG	1 cut(s)	463
BseXI	GCAGC	6 cut(s)	42, 67, 727, 1702, 2698, 2726
BsgI	GTGCAG	1 cut(s)	2607
Bsh1236I	CGCG	1 cut(s)	1065
Bsh1285I	CGRYCG	1 cut(s)	466
BshFI	GGCC	7 cut(s)	226, 297, 361, 465, 1300, 1380, 1800
BshNI	GGYRCC	3 cut(s)	451, 1111, 2344
BsiEI	CGRYCG	1 cut(s)	466
BsiSI	CCGG	5 cut(s)	41, 545, 1116, 1567, 2737
BslFI	GGGAC	4 cut(s)	901, 1572, 1583, 2352
BslI	CCNNNNNNNGG	8 cut(s)	40, 132, 461, 677, 1556, 1777, 2233, 2377
BsmAI	GTCTC	5 cut(s)	187, 440, 679, 1426, 2091
BsmBI	CGTCTC	2 cut(s)	187, 440
BsmFI	GGGAC	4 cut(s)	901, 1572, 1583, 2352
BsmI	GAATGC	1 cut(s)	1082
BsnI	GGCC	7 cut(s)	226, 297, 361, 465, 1300, 1380, 1800
Bso31I	GGTCTC	1 cut(s)	679
Bsp1286I	GDGCHC	1 cut(s)	1114
Bsp13I	TCCGGA	1 cut(s)	40
Bsp1407I	TGTACA	1 cut(s)	2304
BspACI	CCGC	9 cut(s)	5, 462, 466, 1065, 1099, 1973, 2022, 2284, 2383
BspANI	GGCC	7 cut(s)	226, 297, 361, 465, 1300, 1380, 1800
BspCNI	CTCAG	6 cut(s)	27, 197, 758, 1216, 1918, 2141
BspEI	TCCGGA	1 cut(s)	40
BspFNI	CGCG	1 cut(s)	1065
BspHI	TCATGA	3 cut(s)	594, 1237, 2509
BspLI	GGNNCC	4 cut(s)	332, 453, 1113, 2346
BspMAI	CTGCAG	2 cut(s)	1467, 2716
BspMI	ACCTGC	1 cut(s)	2454
BspOI	GCTAGC	2 cut(s)	1076, 1599
BspPI	GGATC	4 cut(s)	730, 1430, 1570, 1944
BspQI	GCTCTTC	1 cut(s)	511
BspT107I	GGYRCC	3 cut(s)	451, 1111, 2344
BspTNI	GGTCTC	1 cut(s)	679
BsrBI	CCGCTC	2 cut(s)	468, 2383
BsrDI	GCAATG	8 cut(s)	69, 1338, 1454, 1516, 1597, 2153, 2532, 2773
BsrGI	TGTACA	1 cut(s)	2304
BsrI	ACTGG	9 cut(s)	334, 934, 1046, 1127, 2055, 2066, 2346, 2371, 2487
BssECI	CCNNGG	4 cut(s)	371, 943, 1375, 1783
BssNI	GRCGYC	2 cut(s)	180, 264
BssT1I	CCWWGG	3 cut(s)	943, 1375, 1783
Bst2UI	CCWGG	3 cut(s)	373, 644, 1580
Bst6I	CTCTTC	6 cut(s)	42, 511, 1842, 2094, 2133, 2441
BstACI	GRCGYC	2 cut(s)	180, 264
BstAPI	GCANNNNNTGC	1 cut(s)	1964
BstAUI	TGTACA	1 cut(s)	2304
BstBAI	YACGTR	1 cut(s)	2330
BstC8I	GCNNGC	9 cut(s)	228, 232, 581, 802, 837, 1074, 1507, 1597, 2284
BstF5I	GGATG	4 cut(s)	49, 1820, 2107, 2436
BstFNI	CGCG	1 cut(s)	1065
BstHHI	GCGC	1 cut(s)	1065
BstMAI	GTCTC	5 cut(s)	187, 440, 679, 1426, 2091
BstMCI	CGRYCG	1 cut(s)	466
BstMWI	GCNNNNNNNGC	8 cut(s)	80, 86, 451, 1069, 1166, 1596, 1964, 1973
BstNI	CCWGG	3 cut(s)	373, 644, 1580
BstNSI	RCATGY	4 cut(s)	590, 1509, 2013, 2118
BstSCI	CCNGG	7 cut(s)	371, 543, 642, 1114, 1566, 1578, 2736
BstSFI	CTRYAG	2 cut(s)	1463, 2712
BstSLI	GKGCMC	1 cut(s)	1114
BstUI	CGCG	1 cut(s)	1065
BstV1I	GCAGC	6 cut(s)	42, 67, 727, 1702, 2698, 2726
BstV2I	GAAGAC	2 cut(s)	1226, 1674
BstX2I	RGATCY	4 cut(s)	722, 1243, 1961, 2407
BstXI	CCANNNNNNTGG	1 cut(s)	1181
BstYI	RGATCY	4 cut(s)	722, 1243, 1961, 2407
BstZI	CGGCCG	1 cut(s)	463
BsuI	GTATCC	4 cut(s)	274, 565, 689, 868
BsuRI	GGCC	7 cut(s)	226, 297, 361, 465, 1300, 1380, 1800
BtsCI	GGATG	4 cut(s)	49, 1820, 2107, 2436
BtsI	GCAGTG	1 cut(s)	2619
BveI	ACCTGC	1 cut(s)	2454
Cac8I	GCNNGC	9 cut(s)	228, 232, 581, 802, 837, 1074, 1507, 1597, 2284
CciI	TCATGA	3 cut(s)	594, 1237, 2509
CciNI	GCGGCCGC	1 cut(s)	463
CfoI	GCGC	1 cut(s)	1065
Cfr13I	GGNCC	6 cut(s)	359, 392, 640, 661, 1780, 2264
CseI	GACGC	3 cut(s)	272, 422, 585
Csp6I	GTAC	8 cut(s)	681, 903, 1447, 2013, 2305, 2362, 2458, 2723
CspCI	CAANNNNNGTGG	2 cut(s)	116, 151
CviQI	GTAC	8 cut(s)	681, 903, 1447, 2013, 2305, 2362, 2458, 2723
DraI	TTTAAA	1 cut(s)	1147
EaeI	YGGCCR	2 cut(s)	463, 1798
EagI	CGGCCG	1 cut(s)	463
Eam1104I	CTCTTC	6 cut(s)	42, 511, 1842, 2094, 2133, 2441
EarI	CTCTTC	6 cut(s)	42, 511, 1842, 2094, 2133, 2441
EciI	GGCGGA	1 cut(s)	20
EclXI	CGGCCG	1 cut(s)	463
Eco130I	CCWWGG	3 cut(s)	943, 1375, 1783
Eco147I	AGGCCT	1 cut(s)	226
Eco31I	GGTCTC	1 cut(s)	679
Eco32I	GATATC	2 cut(s)	255, 2050
Eco47I	GGWCC	5 cut(s)	392, 640, 661, 1780, 2264
Eco52I	CGGCCG	1 cut(s)	463
Eco57I	CTGAAG	5 cut(s)	843, 1742, 2075, 2370, 2465
EcoO109I	RGGNCCY	2 cut(s)	392, 661
EcoRII	CCWGG	3 cut(s)	371, 642, 1578
EcoRV	GATATC	2 cut(s)	255, 2050
EcoT14I	CCWWGG	3 cut(s)	943, 1375, 1783
ErhI	CCWWGG	3 cut(s)	943, 1375, 1783
Esp3I	CGTCTC	2 cut(s)	187, 440
FalI	AAGNNNNNCTT	4 cut(s)	758, 790, 841, 873
FaqI	GGGAC	4 cut(s)	901, 1572, 1583, 2352
FauI	CCCGC	1 cut(s)	2291
FauNDI	CATATG	1 cut(s)	2719
FbaI	TGATCA	1 cut(s)	1705
FblI	GTMKAC	1 cut(s)	423
FokI	GGATG	4 cut(s)	56, 1827, 2114, 2423
GlaI	GCGC	1 cut(s)	1064
GsuI	CTGGAG	1 cut(s)	807
HaeIII	GGCC	7 cut(s)	226, 297, 361, 465, 1300, 1380, 1800
HapII	CCGG	5 cut(s)	41, 545, 1116, 1567, 2737
HgaI	GACGC	3 cut(s)	272, 422, 585
HhaI	GCGC	1 cut(s)	1065
Hin1I	GRCGYC	2 cut(s)	180, 264
Hin6I	GCGC	1 cut(s)	1063
HinP1I	GCGC	1 cut(s)	1063
HincII	GTYRAC	1 cut(s)	2497
HindII	GTYRAC	1 cut(s)	2497
HindIII	AAGCTT	4 cut(s)	772, 1103, 2204, 2633
HpaII	CCGG	5 cut(s)	41, 545, 1116, 1567, 2737
HphI	GGTGA	5 cut(s)	1079, 2015, 2044, 2673, 2801
Hpy166II	GTNNAC	5 cut(s)	160, 424, 1470, 2307, 2497
Hpy188I	TCNGA	5 cut(s)	187, 247, 259, 1248, 2445
Hpy8I	GTNNAC	5 cut(s)	160, 424, 1470, 2307, 2497
Hpy99I	CGWCG	5 cut(s)	182, 263, 266, 1367, 1776
HpyAV	CCTTC	6 cut(s)	121, 287, 405, 771, 1450, 2169
HpyCH4IV	ACGT	3 cut(s)	180, 1561, 2329
HpyF10VI	GCNNNNNNNGC	8 cut(s)	80, 86, 451, 1069, 1166, 1596, 1964, 1973
HpySE526I	ACGT	3 cut(s)	180, 1561, 2329
Hsp92I	GRCGYC	2 cut(s)	180, 264
HspAI	GCGC	1 cut(s)	1063
Kpn2I	TCCGGA	1 cut(s)	40
Ksp22I	TGATCA	1 cut(s)	1705
LguI	GCTCTTC	1 cut(s)	511
LmnI	GCTCC	4 cut(s)	27, 318, 1138, 2380
Lsp1109I	GCAGC	6 cut(s)	42, 67, 727, 1702, 2698, 2726
LweI	GCATC	5 cut(s)	613, 821, 1276, 1985, 2174
MaeII	ACGT	3 cut(s)	180, 1561, 2329
MbiI	CCGCTC	2 cut(s)	468, 2383
MfeI	CAATTG	1 cut(s)	440
MflI	RGATCY	4 cut(s)	722, 1243, 1961, 2407
MhlI	GDGCHC	1 cut(s)	1114
MlsI	TGGCCA	1 cut(s)	1800
MluCI	AATT	7 cut(s)	241, 440, 869, 1091, 1175, 2032, 2527
MluNI	TGGCCA	1 cut(s)	1800
MlyI	GAGTC	3 cut(s)	46, 387, 2781
MmeI	TCCRAC	1 cut(s)	282
Mox20I	TGGCCA	1 cut(s)	1800
MroI	TCCGGA	1 cut(s)	40
MroXI	GAANNNNTTC	2 cut(s)	2322, 2450
MscI	TGGCCA	1 cut(s)	1800
MseI	TTAA	3 cut(s)	1146, 1676, 2256
MslI	CAYNNNNRTG	2 cut(s)	407, 1813
Msp20I	TGGCCA	1 cut(s)	1800
MspA1I	CMGCKG	1 cut(s)	2711
MspI	CCGG	5 cut(s)	41, 545, 1116, 1567, 2737
MspR9I	CCNGG	7 cut(s)	373, 545, 644, 1116, 1568, 1580, 2738
MunI	CAATTG	1 cut(s)	440
Mva1269I	GAATGC	1 cut(s)	1082
MvaI	CCWGG	3 cut(s)	373, 644, 1580
MvnI	CGCG	1 cut(s)	1065
MwoI	GCNNNNNNNGC	8 cut(s)	80, 86, 451, 1069, 1166, 1596, 1964, 1973
NciI	CCSGG	4 cut(s)	545, 1116, 1568, 2738
NdeI	CATATG	1 cut(s)	2719
NheI	GCTAGC	2 cut(s)	1072, 1595
NlaIV	GGNNCC	4 cut(s)	332, 453, 1113, 2346
NmuCI	GTSAC	3 cut(s)	299, 2196, 2789
NotI	GCGGCCGC	1 cut(s)	463
NspI	RCATGY	4 cut(s)	590, 1509, 2013, 2118
PaeI	GCATGC	1 cut(s)	1509
PagI	TCATGA	3 cut(s)	594, 1237, 2509
PceI	AGGCCT	1 cut(s)	226
PciSI	GCTCTTC	1 cut(s)	511
PctI	GAATGC	1 cut(s)	1082
PdmI	GAANNNNTTC	2 cut(s)	2322, 2450
PfeI	GAWTC	7 cut(s)	206, 1199, 1249, 1352, 1651, 2018, 2753
PflMI	CCANNNNNTGG	1 cut(s)	2233
PleI	GAGTC	3 cut(s)	45, 386, 2780
PpsI	GAGTC	3 cut(s)	45, 386, 2780
Ppu21I	YACGTR	1 cut(s)	2330
PpuMI	RGGWCCY	2 cut(s)	392, 661
PshBI	ATTAAT	1 cut(s)	1676
Psp5II	RGGWCCY	2 cut(s)	392, 661
Psp6I	CCWGG	3 cut(s)	371, 642, 1578
PspGI	CCWGG	3 cut(s)	371, 642, 1578
PspN4I	GGNNCC	4 cut(s)	332, 453, 1113, 2346
PspPI	GGNCC	6 cut(s)	359, 392, 640, 661, 1780, 2264
PspPPI	RGGWCCY	2 cut(s)	392, 661
PsrI	GAACNNNNNNTAC	2 cut(s)	895, 927
PstI	CTGCAG	2 cut(s)	1467, 2716
PsuI	RGATCY	4 cut(s)	722, 1243, 1961, 2407
PvuII	CAGCTG	1 cut(s)	2711
RsaI	GTAC	8 cut(s)	682, 904, 1448, 2014, 2306, 2363, 2459, 2724
RsaNI	GTAC	8 cut(s)	681, 903, 1447, 2013, 2305, 2362, 2458, 2723
RseI	CAYNNNNRTG	2 cut(s)	407, 1813
SapI	GCTCTTC	1 cut(s)	511
SaqAI	TTAA	3 cut(s)	1146, 1676, 2256
Sau96I	GGNCC	6 cut(s)	359, 392, 640, 661, 1780, 2264
SchI	GAGTC	3 cut(s)	46, 387, 2781
ScrFI	CCNGG	7 cut(s)	373, 545, 644, 1116, 1568, 1580, 2738
SduI	GDGCHC	1 cut(s)	1114
SfaNI	GCATC	5 cut(s)	613, 821, 1276, 1985, 2174
SfcI	CTRYAG	2 cut(s)	1463, 2712
SinI	GGWCC	5 cut(s)	392, 640, 661, 1780, 2264
SmiMI	CAYNNNNRTG	2 cut(s)	407, 1813
SpeI	ACTAGT	2 cut(s)	1790, 2179
SphI	GCATGC	1 cut(s)	1509
Sse9I	AATT	7 cut(s)	241, 440, 869, 1091, 1175, 2032, 2527
SseBI	AGGCCT	1 cut(s)	226
SsiI	CCGC	9 cut(s)	5, 462, 466, 1065, 1099, 1973, 2022, 2284, 2383
SspI	AATATT	2 cut(s)	1325, 1680
StuI	AGGCCT	1 cut(s)	226
StyD4I	CCNGG	7 cut(s)	371, 543, 642, 1114, 1566, 1578, 2736
StyI	CCWWGG	3 cut(s)	943, 1375, 1783
TaiI	ACGT	3 cut(s)	183, 1564, 2332
TaqI	TCGA	5 cut(s)	14, 470, 779, 1138, 1365
TaqII	GACCGA	2 cut(s)	614, 703
TasI	AATT	7 cut(s)	241, 440, 869, 1091, 1175, 2032, 2527
TatI	WGTACW	4 cut(s)	902, 2012, 2304, 2722
TauI	GCSGC	4 cut(s)	465, 468, 1976, 2386
TfiI	GAWTC	7 cut(s)	206, 1199, 1249, 1352, 1651, 2018, 2753
Tru1I	TTAA	3 cut(s)	1146, 1676, 2256
Tru9I	TTAA	3 cut(s)	1146, 1676, 2256
TseFI	GTSAC	3 cut(s)	299, 2196, 2789
TseI	GCWGC	6 cut(s)	30, 80, 740, 1715, 2711, 2714
Tsp45I	GTSAC	3 cut(s)	299, 2196, 2789
Van91I	CCANNNNNTGG	1 cut(s)	2233
VpaK11BI	GGWCC	5 cut(s)	392, 640, 661, 1780, 2264
VspI	ATTAAT	1 cut(s)	1676
XceI	RCATGY	4 cut(s)	590, 1509, 2013, 2118
XmaJI	CCTAGG	1 cut(s)	943
XmiI	GTMKAC	1 cut(s)	423
XmnI	GAANNNNTTC	2 cut(s)	2322, 2450
ZraI	GACGTC	1 cut(s)	181

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.