Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0015057

Physical Location & Seq

Genomic Coordinates Forward (+)

25941154 .. 25942482

Gene Structure 1329 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1212400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1329 bp

ATGGCTCCCATCTTCTCACCCCTACTCCTATTTCTATCTTTCTTGTGTTTTTTCACATTAGGGGCCATGCCTTTCACCGTCATCATGTCGGATTCCGGCGTGCCGTCCGACCTTGTGGACGGACCACAAAACGGGTTCTCCATGAACAAAGACGGAGCCCGAACCGATGCCCGTGAGCAAGAAGCGGTCTATGACATCATGCGGGCAACAGGAAATGATTGGGCCACTGAAATTCCTGACGTGTGTCGTGGCCGGTGGCACGGCATTGAGTGCAAGCCCGACAAGGACAACGTCTACCACGTCGTTTCACTCTCTTTCGGGGCCCTATCCGACGACACCGCATTCCCGACATGCGACCCGACCCGGTCTCATATTTCACCCTCCATCACTAAACTTCCTTACCTCCGGACCTTATTTTTCTACCGTTGTTTAACCTACAATCCTCAGCCCATCCCATCGTTTTTGGGGCATTTGGGTCCCACACTTCAGACATTAGTTCTTAGAGAAAACGGGCATATGGGTCCTATTCCTATTGAGTTGGGCAATCTCACCCGTTTAAGTGTCCTTGACCTCCACAAAAACAATCTCAACGGTTCAATTCCAGTGTCCTTGGGCCGGATCACCGGTCTGAGGTCGTTAGACCTAAGTGGAAATACGCTAACCGGTTCAATACCCAATTTTACCTTCCCAATTTTGAGCATCCTTGATCTGAACCAAAATCTTCTAATGGGTTCAATCCCATCCAGCATTGGAGCCTGTCATGCCCTAATCAAAATGGATTTGGGCCACAACCGCCTCGCAGGCCCACTTCCCGACTCCGTGGGCGGCCTGAAAAGCCTTATGCTGATGGATTTAAGCTACAATCGACTCAAGGGTCCACTTCCAATGTGGATTCGAAGCTTAATCTCCCTTCAAACCTTGATCCTCAAGGGAAACCAAATGGGGCCCACCCCAATTCCAAGTGACTTGTTTGATGGTATGAAGGGGCTAATGACACTAATTTTGTCAAACATGAATTTGCATGGTCCTCTACCAGCATCATTAGGTCGGTTGCCGAGCCTCCGCGTGCTTCATCTCGACGGGAACAACTTCAACGGCTCAATCCCAGCTAGTTTTAGGGAGCTGAAAAATGTGAGTGAATTGAGATTGAATGACAATGTGCTAATGGGTCCAATCCCATTTGGAAGAGAAATGGTTTGGAGGATGAGGAGGAAGCTAAGGCTCTATAACAATTCTGGGCTATGCTACAAGTCTAATAGTGGGTTGGAAGACAATTTAGACTCGTCATTCAATTCTGGCATTGGTACATGTGGTACACCGAGACCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0001101 GO:0002682 GO:0002831 GO:0003002 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0006950 GO:0006952 GO:0007275 GO:0007389 GO:0008150 GO:0008356 GO:0009605 GO:0009607 GO:0009620 GO:0009653 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009888 GO:0009987 GO:0010016 GO:0010026 GO:0010033 GO:0010090 GO:0010103 GO:0010374 GO:0010375 GO:0010376 GO:0016020 GO:0016043 GO:0030154 GO:0031224 GO:0031225 GO:0031347 GO:0032101 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033218 GO:0033612 GO:0033993 GO:0042221 GO:0042277 GO:0043207 GO:0043900 GO:0044425 GO:0045088 GO:0048367 GO:0048468 GO:0048583 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0050776 GO:0050789 GO:0050832 GO:0050896 GO:0051301 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071840 GO:0080134 GO:0090558 GO:0090626 GO:0090698 GO:0097305 GO:0097306 GO:0098542 GO:1900150 GO:1901700 GO:1901701 GO:1905034

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8

Protein Analysis

443

Amino Acids

48.43

Weight (kDa)

8.39

Isoelectric Point (pI)

40.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_8	PF13855	160 - 220	2.7e-06	Leucine rich repeat
LRR_8	PF13855	258 - 313	8e-07	Leucine rich repeat
LRR_8	PF13855	319 - 364	4.4e-06	Leucine rich repeat
LRR_8	PF13855	329 - 388	4.8e-06	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015057)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80080
fragaria_vesca	FvH4_6g29640
malus_domestica	MD17G1212400.v1.1
prunus_persica	Prupe.3G087800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0135241
rosa_laevigata	RLG00000019451
rosa_multiflora	Rmu_co8417127.1_g000001 Rmu_sc0002732.1_g000001 Rmu_sc0004443.1_g000015
rosa_roxburghii	Rroxscaffold_2G00109370
rosa_rugosa	Rorug02G0323900
rosa_samantha	Rh2AG370900 Rh2BG380600 Rh2CG359900 Rh2DG397200
rosa_wichuraiana	Rw2G030610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	873
AccI	GTMKAC	1 cut(s)	294
AccII	CGCG	1 cut(s)	1065
AccIII	TCCGGA	1 cut(s)	405
AciI	CCGC	6 cut(s)	185, 202, 339, 793, 825, 1063
AclWI	GGATC	2 cut(s)	626, 916
AcoI	YGGCCR	1 cut(s)	250
AcsI	RAATTY	2 cut(s)	231, 1015
AcuI	CTGAAG	1 cut(s)	470
AfaI	GTAC	2 cut(s)	1306, 1315
AfiI	CCNNNNNNNGG	3 cut(s)	131, 615, 630
AflIII	ACRYGT	2 cut(s)	240, 1307
AgeI	ACCGGT	2 cut(s)	623, 662
AgsI	TTSAA	7 cut(s)	597, 669, 735, 914, 1093, 1150, 1291
AjiI	CACGTC	2 cut(s)	241, 301
AjuI	GAANNNNNNNTTGG	2 cut(s)	668, 700
AluBI	AGCT	5 cut(s)	858, 900, 1109, 1123, 1216
AluI	AGCT	5 cut(s)	858, 900, 1109, 1123, 1216
Alw26I	GTCTC	2 cut(s)	372, 1315
AlwI	GGATC	2 cut(s)	626, 916
Aor13HI	TCCGGA	1 cut(s)	405
AoxI	GGCC	9 cut(s)	63, 222, 250, 321, 613, 784, 802, 826, 944
ApaI	GGGCCC	2 cut(s)	325, 948
ApoI	RAATTY	2 cut(s)	231, 1015
ArsI	GACNNNNNNTTYG	2 cut(s)	985, 1017
AsiGI	ACCGGT	2 cut(s)	623, 662
Asp700I	GAANNNNTTC	1 cut(s)	1088
AsuC2I	CCSGG	1 cut(s)	364
AsuHPI	GGTGA	5 cut(s)	9, 67, 369, 541, 613
AsuII	TTCGAA	1 cut(s)	895
AvaII	GGWCC	7 cut(s)	122, 408, 476, 521, 875, 1025, 1169
BaeGI	GKGCMC	2 cut(s)	325, 948
BanII	GRGCYC	3 cut(s)	160, 325, 948
BbsI	GAAGAC	1 cut(s)	1275
BbvCI	CCTCAGC	1 cut(s)	444
BccI	CCATC	7 cut(s)	17, 392, 458, 463, 748, 841, 968
BceAI	ACGGC	3 cut(s)	88, 277, 1111
BcnI	CCSGG	1 cut(s)	364
BcoDI	GTCTC	2 cut(s)	372, 1315
BfaI	CTAG	1 cut(s)	1110
BglI	GCCNNNNNGGC	1 cut(s)	801
BisI	GCNGC	1 cut(s)	826
BlsI	GCNGC	1 cut(s)	827
Bme1390I	CCNGG	1 cut(s)	364
Bme18I	GGWCC	7 cut(s)	122, 408, 476, 521, 875, 1025, 1169
BmgBI	CACGTC	2 cut(s)	241, 301
BmrFI	CCNGG	1 cut(s)	364
BmsI	GCATC	3 cut(s)	157, 708, 1046
BoxI	GACNNNNGTC	1 cut(s)	243
BpiI	GAAGAC	1 cut(s)	1275
Bpu10I	CCTNAGC	2 cut(s)	444, 1217
Bpu14I	TTCGAA	1 cut(s)	895
BpuEI	CTTGAG	2 cut(s)	854, 911
BpuMI	CCSGG	1 cut(s)	364
BsaI	GGTCTC	2 cut(s)	372, 1315
BsaJI	CCNNGG	2 cut(s)	609, 819
BsaWI	WCCGGW	3 cut(s)	405, 623, 662
BsaXI	ACNNNNNCTCC	4 cut(s)	9, 39, 122, 152
Bsc4I	CCNNNNNNNGG	3 cut(s)	131, 615, 630
Bse118I	RCCGGY	3 cut(s)	252, 623, 662
Bse1I	ACTGG	1 cut(s)	602
BseAI	TCCGGA	1 cut(s)	405
BseDI	CCNNGG	2 cut(s)	609, 819
BseGI	GGATG	4 cut(s)	450, 699, 740, 1209
BseLI	CCNNNNNNNGG	3 cut(s)	131, 615, 630
BseMII	CTCAG	2 cut(s)	458, 620
BseNI	ACTGG	1 cut(s)	602
BseRI	GAGGAG	1 cut(s)	1222
BseSI	GKGCMC	2 cut(s)	325, 948
BseYI	CCCAGC	1 cut(s)	1105
Bsh1236I	CGCG	1 cut(s)	1065
BshFI	GGCC	9 cut(s)	65, 224, 252, 323, 615, 786, 804, 828, 946
BshTI	ACCGGT	2 cut(s)	623, 662
BsiSI	CCGG	7 cut(s)	96, 253, 364, 406, 616, 624, 663
BslFI	GGGAC	1 cut(s)	462
BslI	CCNNNNNNNGG	3 cut(s)	131, 615, 630
BsmAI	GTCTC	2 cut(s)	372, 1315
BsmFI	GGGAC	1 cut(s)	462
BsmI	GAATGC	1 cut(s)	341
BsnI	GGCC	9 cut(s)	65, 224, 252, 323, 615, 786, 804, 828, 946
Bso31I	GGTCTC	2 cut(s)	372, 1315
Bsp119I	TTCGAA	1 cut(s)	895
Bsp120I	GGGCCC	2 cut(s)	321, 944
Bsp1286I	GDGCHC	3 cut(s)	160, 325, 948
Bsp13I	TCCGGA	1 cut(s)	405
Bsp143I	GATC	3 cut(s)	618, 706, 921
BspACI	CCGC	6 cut(s)	185, 202, 339, 793, 825, 1063
BspANI	GGCC	9 cut(s)	65, 224, 252, 323, 615, 786, 804, 828, 946
BspCNI	CTCAG	2 cut(s)	457, 621
BspEI	TCCGGA	1 cut(s)	405
BspFNI	CGCG	1 cut(s)	1065
BspPI	GGATC	2 cut(s)	626, 916
BspT104I	TTCGAA	1 cut(s)	895
BspTNI	GGTCTC	2 cut(s)	372, 1315
BsrFI	RCCGGY	3 cut(s)	252, 623, 662
BsrI	ACTGG	1 cut(s)	602
BssAI	RCCGGY	3 cut(s)	252, 623, 662
BssECI	CCNNGG	2 cut(s)	609, 819
BssMI	GATC	3 cut(s)	618, 706, 921
BssT1I	CCWWGG	1 cut(s)	609
Bst4CI	ACNGT	4 cut(s)	79, 425, 593, 1326
Bst6I	CTCTTC	1 cut(s)	1180
BstAPI	GCANNNNNTGC	1 cut(s)	270
BstBI	TTCGAA	1 cut(s)	895
BstC8I	GCNNGC	5 cut(s)	101, 204, 275, 802, 1067
BstDEI	CTNAG	5 cut(s)	444, 500, 629, 644, 1217
BstDSI	CCRYGG	1 cut(s)	819
BstF5I	GGATG	4 cut(s)	450, 699, 740, 1209
BstFNI	CGCG	1 cut(s)	1065
BstKTI	GATC	3 cut(s)	621, 709, 924
BstMAI	GTCTC	2 cut(s)	372, 1315
BstMBI	GATC	3 cut(s)	618, 706, 921
BstMWI	GCNNNNNNNGC	5 cut(s)	270, 761, 792, 801, 834
BstNSI	RCATGY	2 cut(s)	354, 1311
BstPAI	GACNNNNGTC	1 cut(s)	243
BstSCI	CCNGG	1 cut(s)	362
BstSLI	GKGCMC	2 cut(s)	325, 948
BstUI	CGCG	1 cut(s)	1065
BstV2I	GAAGAC	1 cut(s)	1275
BsuRI	GGCC	9 cut(s)	65, 224, 252, 323, 615, 786, 804, 828, 946
BtgI	CCRYGG	1 cut(s)	819
BtrI	CACGTC	2 cut(s)	241, 301
BtsCI	GGATG	4 cut(s)	450, 699, 740, 1209
BtsIMutI	CAGTG	2 cut(s)	225, 609
Cac8I	GCNNGC	5 cut(s)	101, 204, 275, 802, 1067
Cfr10I	RCCGGY	3 cut(s)	252, 623, 662
Csp6I	GTAC	2 cut(s)	1305, 1314
CspAI	ACCGGT	2 cut(s)	623, 662
CviAII	CATG	9 cut(s)	67, 85, 142, 199, 351, 761, 1012, 1022, 1308
CviQI	GTAC	2 cut(s)	1305, 1314
DdeI	CTNAG	5 cut(s)	444, 500, 629, 644, 1217
DpnI	GATC	3 cut(s)	620, 708, 923
DpnII	GATC	3 cut(s)	618, 706, 921
DrdI	GACNNNNNNGTC	1 cut(s)	873
DseDI	GACNNNNNNGTC	1 cut(s)	873
EaeI	YGGCCR	1 cut(s)	250
Eam1104I	CTCTTC	1 cut(s)	1180
EarI	CTCTTC	1 cut(s)	1180
Eco130I	CCWWGG	1 cut(s)	609
Eco24I	GRGCYC	3 cut(s)	160, 325, 948
Eco31I	GGTCTC	2 cut(s)	372, 1315
Eco47I	GGWCC	7 cut(s)	122, 408, 476, 521, 875, 1025, 1169
Eco57I	CTGAAG	1 cut(s)	470
EcoO109I	RGGNCCY	5 cut(s)	321, 322, 476, 521, 944
EcoT14I	CCWWGG	1 cut(s)	609
EcoT38I	GRGCYC	3 cut(s)	160, 325, 948
ErhI	CCWWGG	1 cut(s)	609
FaeI	CATG	9 cut(s)	70, 88, 145, 202, 354, 764, 1015, 1025, 1311
FaqI	GGGAC	1 cut(s)	462
FatI	CATG	9 cut(s)	66, 84, 141, 198, 350, 760, 1011, 1021, 1307
FauI	CCCGC	1 cut(s)	195
FauNDI	CATATG	1 cut(s)	516
FblI	GTMKAC	1 cut(s)	294
Fnu4HI	GCNGC	1 cut(s)	826
FokI	GGATG	4 cut(s)	437, 686, 727, 1216
FriOI	GRGCYC	3 cut(s)	160, 325, 948
Fsp4HI	GCNGC	1 cut(s)	826
FspBI	CTAG	1 cut(s)	1110
GluI	GCNGC	1 cut(s)	826
GsaI	CCCAGC	1 cut(s)	1109
HaeIII	GGCC	9 cut(s)	65, 224, 252, 323, 615, 786, 804, 828, 946
HapII	CCGG	7 cut(s)	96, 253, 364, 406, 616, 624, 663
Hin1II	CATG	9 cut(s)	70, 88, 145, 202, 354, 764, 1015, 1025, 1311
HindIII	AAGCTT	1 cut(s)	898
HinfI	GANTC	5 cut(s)	92, 815, 867, 892, 1280
HpaII	CCGG	7 cut(s)	96, 253, 364, 406, 616, 624, 663
HphI	GGTGA	5 cut(s)	9, 67, 369, 541, 613
Hpy166II	GTNNAC	4 cut(s)	118, 295, 878, 1316
Hpy188I	TCNGA	6 cut(s)	91, 109, 331, 489, 630, 711
Hpy188III	TCNNGA	5 cut(s)	236, 346, 406, 812, 1076
Hpy8I	GTNNAC	4 cut(s)	118, 295, 878, 1316
Hpy99I	CGWCG	3 cut(s)	305, 335, 1082
HpyAV	CCTTC	3 cut(s)	694, 920, 976
HpyCH4III	ACNGT	4 cut(s)	79, 425, 593, 1326
HpyCH4IV	ACGT	3 cut(s)	240, 291, 300
HpyCH4V	TGCA	2 cut(s)	273, 1021
HpyF10VI	GCNNNNNNNGC	5 cut(s)	270, 761, 792, 801, 834
HpyF3I	CTNAG	5 cut(s)	444, 500, 629, 644, 1217
HpySE526I	ACGT	3 cut(s)	240, 291, 300
Hsp92II	CATG	9 cut(s)	70, 88, 145, 202, 354, 764, 1015, 1025, 1311
KflI	GGGWCCC	1 cut(s)	476
Kpn2I	TCCGGA	1 cut(s)	405
Kzo9I	GATC	3 cut(s)	618, 706, 921
LmnI	GCTCC	4 cut(s)	10, 155, 752, 1120
LweI	GCATC	3 cut(s)	157, 708, 1046
MaeI	CTAG	1 cut(s)	1110
MaeII	ACGT	3 cut(s)	240, 291, 300
MaeIII	GTNAC	1 cut(s)	962
MalI	GATC	3 cut(s)	620, 708, 923
MboI	GATC	3 cut(s)	618, 706, 921
MboII	GAAGA	4 cut(s)	4, 713, 1197, 1280
MhlI	GDGCHC	3 cut(s)	160, 325, 948
MlyI	GAGTC	3 cut(s)	809, 861, 1274
MmeI	TCCRAC	4 cut(s)	69, 132, 354, 1245
MroI	TCCGGA	1 cut(s)	405
MroXI	GAANNNNTTC	1 cut(s)	1088
MseI	TTAA	4 cut(s)	431, 557, 854, 902
MspI	CCGG	7 cut(s)	96, 253, 364, 406, 616, 624, 663
MspR9I	CCNGG	1 cut(s)	364
Mva1269I	GAATGC	1 cut(s)	341
MvnI	CGCG	1 cut(s)	1065
MwoI	GCNNNNNNNGC	5 cut(s)	270, 761, 792, 801, 834
NciI	CCSGG	1 cut(s)	364
NdeI	CATATG	1 cut(s)	516
NdeII	GATC	3 cut(s)	618, 706, 921
NlaIII	CATG	9 cut(s)	70, 88, 145, 202, 354, 764, 1015, 1025, 1311
NmeAIII	GCCGAG	1 cut(s)	1080
NmuCI	GTSAC	1 cut(s)	962
NspI	RCATGY	2 cut(s)	354, 1311
NspV	TTCGAA	1 cut(s)	895
PciI	ACATGT	1 cut(s)	1307
PcsI	WCGNNNNNNNCGW	1 cut(s)	297
PctI	GAATGC	1 cut(s)	341
PdmI	GAANNNNTTC	1 cut(s)	1088
PfeI	GAWTC	2 cut(s)	92, 892
PflFI	GACNNNGTC	2 cut(s)	290, 364
PinAI	ACCGGT	2 cut(s)	623, 662
PkrI	GCNGC	1 cut(s)	827
PleI	GAGTC	3 cut(s)	809, 861, 1274
PpsI	GAGTC	3 cut(s)	809, 861, 1274
PpuMI	RGGWCCY	2 cut(s)	476, 521
PscI	ACATGT	1 cut(s)	1307
PshAI	GACNNNNGTC	1 cut(s)	243
Psp5II	RGGWCCY	2 cut(s)	476, 521
PspFI	CCCAGC	1 cut(s)	1105
PspOMI	GGGCCC	2 cut(s)	321, 944
PspPPI	RGGWCCY	2 cut(s)	476, 521
PsyI	GACNNNGTC	2 cut(s)	290, 364
RsaI	GTAC	2 cut(s)	1306, 1315
RsaNI	GTAC	2 cut(s)	1305, 1314
SaqAI	TTAA	4 cut(s)	431, 557, 854, 902
SatI	GCNGC	1 cut(s)	826
Sau3AI	GATC	3 cut(s)	618, 706, 921
SchI	GAGTC	3 cut(s)	809, 861, 1274
ScrFI	CCNGG	1 cut(s)	364
SduI	GDGCHC	3 cut(s)	160, 325, 948
SfaNI	GCATC	3 cut(s)	157, 708, 1046
SfuI	TTCGAA	1 cut(s)	895
SinI	GGWCC	7 cut(s)	122, 408, 476, 521, 875, 1025, 1169
SmlI	CTYRAG	2 cut(s)	869, 926
SmoI	CTYRAG	2 cut(s)	869, 926
SsiI	CCGC	6 cut(s)	185, 202, 339, 793, 825, 1063
SspMI	CTAG	1 cut(s)	1110
StyD4I	CCNGG	1 cut(s)	362
StyI	CCWWGG	1 cut(s)	609
TaaI	ACNGT	4 cut(s)	79, 425, 593, 1326
TaiI	ACGT	3 cut(s)	243, 294, 303
TaqI	TCGA	3 cut(s)	865, 895, 1077
TauI	GCSGC	1 cut(s)	828
TfiI	GAWTC	2 cut(s)	92, 892
Tru1I	TTAA	4 cut(s)	431, 557, 854, 902
Tru9I	TTAA	4 cut(s)	431, 557, 854, 902
TscAI	CASTG	2 cut(s)	232, 609
TseFI	GTSAC	1 cut(s)	962
Tsp45I	GTSAC	1 cut(s)	962
TspDTI	ATGAA	4 cut(s)	158, 995, 1028, 1061
TspGWI	ACGGA	3 cut(s)	135, 168, 808
TspRI	CASTG	2 cut(s)	232, 609
Tth111I	GACNNNGTC	2 cut(s)	290, 364
VpaK11BI	GGWCC	7 cut(s)	122, 408, 476, 521, 875, 1025, 1169
XapI	RAATTY	2 cut(s)	231, 1015
XceI	RCATGY	2 cut(s)	354, 1311
XcmI	CCANNNNNNNNNTGG	1 cut(s)	885
XmiI	GTMKAC	1 cut(s)	294
XmnI	GAANNNNTTC	1 cut(s)	1088
XspI	CTAG	1 cut(s)	1110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.