Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8417127.1

Orthogroup ID

OG0015057

Physical Location & Seq

Genomic Coordinates Reverse (-)

175 .. 1311

Gene Structure 1137 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8417127.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

atgcgtgccacgggcaacgattgggccactgacatctcagacgtgtgtcgtggccgttggcacgggattgagtgcatgcccgacaagaacgatattttccacgtcgtctccctctcctttggagccttgtcagacgacaccgccttcccgacttgcgacccaacccggtcacatatttcgccgtccatcactaggctccattacctccggaccctctttttctaccgttgtttcagttacaacccccagccaatcccgtcatttctcggccaattgggtcccactctgcaaacactagtgcttagagacaacgggcacgtgggtcctatacctattgagctgggcaatctcacccgtttaaaggttctcgacctccacaaaaataatctcaacggttcaattccggtctcactaaaccgtgtcaccggtctaaggtcgttagacttgagctgtaattctctaaccggttcaatacccaatttcagcttccccatcttaagcatccttgacatgagccaaaatcttctagccggttcaatcccctcccaaatcggagcctgcctttctcttctcaagatggatttgagccacaactggctcaccggatcgatacccaactccatcggcggcctaaaagacctcatgctcatggatttgagctacaatcgcctcaagggtcctctcccaatgtggtttggaaccttggtgtctcttcaaactctgaacctcaaaggcaaccctatgggcccgacacaaattccaagtgaaggatttgaaggtatgaagggtttaatgattctgatcttatcaaacatgaatctacatggtcctataccttcatcgataggtcacttgccaagccttcgtgtgcttcatcttgatggcaaccacttgaatggttcaatcccaaatagctttcgagagcttaagagcgttggtgagttgagattaaacgacaatggactagttgggtcaattccatttgggagagaaatggtttggaggatgagaaggaagcttaggctttacaataattcagggctttgttataatgctaatagcggttttgaagacaacctggattcatcttccagttttgggattggtccatgcgacccaccgagaccgaggccatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0001101 GO:0002682 GO:0002831 GO:0003002 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0006950 GO:0006952 GO:0007275 GO:0007389 GO:0008150 GO:0008356 GO:0009605 GO:0009607 GO:0009620 GO:0009653 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009888 GO:0009987 GO:0010016 GO:0010026 GO:0010033 GO:0010090 GO:0010103 GO:0010374 GO:0010375 GO:0010376 GO:0016020 GO:0016043 GO:0030154 GO:0031224 GO:0031225 GO:0031347 GO:0032101 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033218 GO:0033612 GO:0033993 GO:0042221 GO:0042277 GO:0043207 GO:0043900 GO:0044425 GO:0045088 GO:0048367 GO:0048468 GO:0048583 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0050776 GO:0050789 GO:0050832 GO:0050896 GO:0051301 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071840 GO:0080134 GO:0090558 GO:0090626 GO:0090698 GO:0097305 GO:0097306 GO:0098542 GO:1900150 GO:1901700 GO:1901701 GO:1905034

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8

Protein Analysis

378

Amino Acids

41.54

Weight (kDa)

8.63

Isoelectric Point (pI)

39.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015057)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80080
fragaria_vesca	FvH4_6g29640
malus_domestica	MD17G1212400.v1.1
prunus_persica	Prupe.3G087800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0135241
rosa_laevigata	RLG00000019451
rosa_multiflora	Rmu_co8417127.1_g000001 Rmu_sc0002732.1_g000001 Rmu_sc0004443.1_g000015
rosa_roxburghii	Rroxscaffold_2G00109370
rosa_rugosa	Rorug02G0323900
rosa_samantha	Rh2AG370900 Rh2BG380600 Rh2CG359900 Rh2DG397200
rosa_wichuraiana	Rw2G030610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1050
AccIII	TCCGGA	1 cut(s)	207
AciI	CCGC	3 cut(s)	141, 627, 1062
AclWI	GGATC	1 cut(s)	613
AcoI	YGGCCR	2 cut(s)	52, 268
AcsI	RAATTY	1 cut(s)	756
AcvI	CACGTG	1 cut(s)	319
AfiI	CCNNNNNNNGG	5 cut(s)	192, 361, 432, 767, 1098
AflII	CTTAAG	2 cut(s)	496, 926
AflIII	ACRYGT	1 cut(s)	42
AgeI	ACCGGT	2 cut(s)	425, 464
AgsI	TTSAA	8 cut(s)	399, 471, 537, 716, 776, 895, 903, 1070
AhlI	ACTAGT	2 cut(s)	295, 964
AjiI	CACGTC	2 cut(s)	43, 103
AjnI	CCWGG	1 cut(s)	1077
AjuI	GAANNNNNNNTTGG	2 cut(s)	470, 502
AluBI	AGCT	7 cut(s)	340, 450, 486, 660, 915, 925, 1018
AluI	AGCT	7 cut(s)	340, 450, 486, 660, 915, 925, 1018
Alw26I	GTCTC	5 cut(s)	112, 300, 412, 714, 1117
AlwI	GGATC	1 cut(s)	613
Aor13HI	TCCGGA	1 cut(s)	207
AoxI	GGCC	6 cut(s)	24, 52, 268, 628, 745, 1130
ApaI	GGGCCC	1 cut(s)	749
ApoI	RAATTY	1 cut(s)	756
AsiGI	ACCGGT	2 cut(s)	425, 464
AspS9I	GGNCC	9 cut(s)	24, 210, 278, 323, 677, 745, 746, 827, 1106
AsuC2I	CCSGG	1 cut(s)	166
AsuHPI	GGTGA	4 cut(s)	343, 415, 592, 950
AvaII	GGWCC	6 cut(s)	210, 278, 323, 677, 827, 1106
BaeGI	GKGCMC	2 cut(s)	318, 749
BanII	GRGCYC	1 cut(s)	749
BbrPI	CACGTG	1 cut(s)	319
BbsI	GAAGAC	1 cut(s)	1077
BccI	CCATC	5 cut(s)	194, 500, 571, 629, 875
BceAI	ACGGC	2 cut(s)	39, 166
BciT130I	CCWGG	1 cut(s)	1079
BcnI	CCSGG	1 cut(s)	166
BcoDI	GTCTC	5 cut(s)	112, 300, 412, 714, 1117
BcuI	ACTAGT	2 cut(s)	295, 964
BfaI	CTAG	4 cut(s)	192, 296, 527, 965
BfrI	CTTAAG	2 cut(s)	496, 926
BisI	GCNGC	1 cut(s)	628
BlsI	GCNGC	1 cut(s)	629
Bme1390I	CCNGG	2 cut(s)	166, 1079
Bme18I	GGWCC	6 cut(s)	210, 278, 323, 677, 827, 1106
BmgBI	CACGTC	2 cut(s)	43, 103
BmgT120I	GGNCC	9 cut(s)	24, 210, 278, 323, 677, 745, 746, 827, 1106
BmrFI	CCNGG	2 cut(s)	166, 1079
BmsI	GCATC	1 cut(s)	510
BoxI	GACNNNNGTC	1 cut(s)	45
BpiI	GAAGAC	1 cut(s)	1077
Bpu10I	CCTNAGC	1 cut(s)	1019
BpuEI	CTTGAG	3 cut(s)	466, 557, 656
BpuMI	CCSGG	1 cut(s)	166
Bsa29I	ATCGAT	2 cut(s)	608, 842
BsaAI	YACGTR	1 cut(s)	319
BsaBI	GATNNNNATC	1 cut(s)	800
BsaI	GGTCTC	2 cut(s)	412, 1117
BsaJI	CCNNGG	3 cut(s)	9, 702, 1127
BsaWI	WCCGGW	5 cut(s)	207, 403, 425, 464, 602
BsaXI	ACNNNNNCTCC	2 cut(s)	92, 122
Bsc4I	CCNNNNNNNGG	5 cut(s)	192, 361, 432, 767, 1098
Bse118I	RCCGGY	3 cut(s)	425, 464, 530
Bse1I	ACTGG	2 cut(s)	599, 1092
Bse8I	GATNNNNATC	1 cut(s)	800
BseAI	TCCGGA	1 cut(s)	207
BseBI	CCWGG	1 cut(s)	1079
BseCI	ATCGAT	2 cut(s)	608, 842
BseDI	CCNNGG	3 cut(s)	9, 702, 1127
BseGI	GGATG	2 cut(s)	501, 1011
BseJI	GATNNNNATC	1 cut(s)	800
BseLI	CCNNNNNNNGG	5 cut(s)	192, 361, 432, 767, 1098
BseMII	CTCAG	1 cut(s)	51
BseNI	ACTGG	2 cut(s)	599, 1092
BseSI	GKGCMC	2 cut(s)	318, 749
BseYI	CCCAGC	2 cut(s)	246, 340
BshFI	GGCC	6 cut(s)	26, 54, 270, 630, 747, 1132
BshTI	ACCGGT	2 cut(s)	425, 464
BshVI	ATCGAT	2 cut(s)	608, 842
BsiSI	CCGG	7 cut(s)	166, 208, 404, 426, 465, 531, 603
BslFI	GGGAC	1 cut(s)	264
BslI	CCNNNNNNNGG	5 cut(s)	192, 361, 432, 767, 1098
BsmAI	GTCTC	5 cut(s)	112, 300, 412, 714, 1117
BsmBI	CGTCTC	1 cut(s)	112
BsmFI	GGGAC	1 cut(s)	264
BsnI	GGCC	6 cut(s)	26, 54, 270, 630, 747, 1132
Bso31I	GGTCTC	2 cut(s)	412, 1117
Bsp120I	GGGCCC	1 cut(s)	745
Bsp1286I	GDGCHC	2 cut(s)	318, 749
Bsp13I	TCCGGA	1 cut(s)	207
Bsp143I	GATC	2 cut(s)	605, 801
BspACI	CCGC	3 cut(s)	141, 627, 1062
BspANI	GGCC	6 cut(s)	26, 54, 270, 630, 747, 1132
BspCNI	CTCAG	1 cut(s)	50
BspDI	ATCGAT	2 cut(s)	608, 842
BspEI	TCCGGA	1 cut(s)	207
BspPI	GGATC	1 cut(s)	613
BspTI	CTTAAG	2 cut(s)	496, 926
BspTNI	GGTCTC	2 cut(s)	412, 1117
BsrFI	RCCGGY	3 cut(s)	425, 464, 530
BsrI	ACTGG	2 cut(s)	599, 1092
BssAI	RCCGGY	3 cut(s)	425, 464, 530
BssECI	CCNNGG	3 cut(s)	9, 702, 1127
BssMI	GATC	2 cut(s)	605, 801
BssT1I	CCWWGG	1 cut(s)	702
Bst2UI	CCWGG	1 cut(s)	1079
Bst4CI	ACNGT	3 cut(s)	227, 395, 419
Bst6I	CTCTTC	2 cut(s)	573, 717
BstAFI	CTTAAG	2 cut(s)	496, 926
BstBAI	YACGTR	1 cut(s)	319
BstC8I	GCNNGC	3 cut(s)	6, 77, 559
BstDEI	CTNAG	4 cut(s)	37, 302, 431, 1019
BstDSI	CCRYGG	1 cut(s)	9
BstF5I	GGATG	2 cut(s)	501, 1011
BstKTI	GATC	2 cut(s)	608, 804
BstMAI	GTCTC	5 cut(s)	112, 300, 412, 714, 1117
BstMBI	GATC	2 cut(s)	605, 801
BstMWI	GCNNNNNNNGC	1 cut(s)	666
BstNI	CCWGG	1 cut(s)	1079
BstNSI	RCATGY	1 cut(s)	79
BstPAI	GACNNNNGTC	1 cut(s)	45
BstSCI	CCNGG	2 cut(s)	164, 1077
BstSLI	GKGCMC	2 cut(s)	318, 749
BstV2I	GAAGAC	1 cut(s)	1077
BstXI	CCANNNNNNTGG	1 cut(s)	896
Bsu15I	ATCGAT	2 cut(s)	608, 842
BsuRI	GGCC	6 cut(s)	26, 54, 270, 630, 747, 1132
BsuTUI	ATCGAT	2 cut(s)	608, 842
BtgI	CCRYGG	1 cut(s)	9
BtrI	CACGTC	2 cut(s)	43, 103
BtsCI	GGATG	2 cut(s)	501, 1011
BtsIMutI	CAGTG	1 cut(s)	27
Cac8I	GCNNGC	3 cut(s)	6, 77, 559
Cfr10I	RCCGGY	3 cut(s)	425, 464, 530
Cfr13I	GGNCC	9 cut(s)	24, 210, 278, 323, 677, 745, 746, 827, 1106
ClaI	ATCGAT	2 cut(s)	608, 842
CspAI	ACCGGT	2 cut(s)	425, 464
CviAII	CATG	8 cut(s)	76, 511, 643, 649, 814, 824, 1110, 1134
DdeI	CTNAG	4 cut(s)	37, 302, 431, 1019
DpnI	GATC	2 cut(s)	607, 803
DpnII	GATC	2 cut(s)	605, 801
DraI	TTTAAA	1 cut(s)	360
EaeI	YGGCCR	2 cut(s)	52, 268
Eam1104I	CTCTTC	2 cut(s)	573, 717
EarI	CTCTTC	2 cut(s)	573, 717
Eco130I	CCWWGG	1 cut(s)	702
Eco24I	GRGCYC	1 cut(s)	749
Eco31I	GGTCTC	2 cut(s)	412, 1117
Eco47I	GGWCC	6 cut(s)	210, 278, 323, 677, 827, 1106
Eco72I	CACGTG	1 cut(s)	319
EcoO109I	RGGNCCY	3 cut(s)	278, 323, 677
EcoRII	CCWGG	1 cut(s)	1077
EcoT14I	CCWWGG	1 cut(s)	702
EcoT38I	GRGCYC	1 cut(s)	749
ErhI	CCWWGG	1 cut(s)	702
Esp3I	CGTCTC	1 cut(s)	112
FaeI	CATG	8 cut(s)	79, 514, 646, 652, 817, 827, 1113, 1137
FaqI	GGGAC	1 cut(s)	264
FatI	CATG	8 cut(s)	75, 510, 642, 648, 813, 823, 1109, 1133
Fnu4HI	GCNGC	1 cut(s)	628
FokI	GGATG	2 cut(s)	488, 1018
FriOI	GRGCYC	1 cut(s)	749
Fsp4HI	GCNGC	1 cut(s)	628
FspBI	CTAG	4 cut(s)	192, 296, 527, 965
GluI	GCNGC	1 cut(s)	628
GsaI	CCCAGC	2 cut(s)	250, 344
HaeIII	GGCC	6 cut(s)	26, 54, 270, 630, 747, 1132
HapII	CCGG	7 cut(s)	166, 208, 404, 426, 465, 531, 603
Hin1II	CATG	8 cut(s)	79, 514, 646, 652, 817, 827, 1113, 1137
HindIII	AAGCTT	1 cut(s)	1016
HinfI	GANTC	3 cut(s)	796, 817, 1082
HpaII	CCGG	7 cut(s)	166, 208, 404, 426, 465, 531, 603
HphI	GGTGA	4 cut(s)	343, 415, 592, 950
Hpy188I	TCNGA	5 cut(s)	40, 133, 554, 723, 801
Hpy188III	TCNNGA	6 cut(s)	148, 208, 368, 574, 878, 920
Hpy99I	CGWCG	1 cut(s)	107
HpyAV	CCTTC	7 cut(s)	154, 761, 770, 778, 846, 872, 1005
HpyCH4III	ACNGT	3 cut(s)	227, 395, 419
HpyCH4IV	ACGT	3 cut(s)	42, 102, 318
HpyCH4V	TGCA	2 cut(s)	75, 289
HpyF10VI	GCNNNNNNNGC	1 cut(s)	666
HpyF3I	CTNAG	4 cut(s)	37, 302, 431, 1019
HpySE526I	ACGT	3 cut(s)	42, 102, 318
Hsp92II	CATG	8 cut(s)	79, 514, 646, 652, 817, 827, 1113, 1137
KflI	GGGWCCC	1 cut(s)	278
Kpn2I	TCCGGA	1 cut(s)	207
Kzo9I	GATC	2 cut(s)	605, 801
LmnI	GCTCC	3 cut(s)	122, 201, 554
LweI	GCATC	1 cut(s)	510
MaeI	CTAG	4 cut(s)	192, 296, 527, 965
MaeII	ACGT	3 cut(s)	42, 102, 318
MaeIII	GTNAC	4 cut(s)	168, 236, 421, 848
MalI	GATC	2 cut(s)	607, 803
MboI	GATC	2 cut(s)	605, 801
MboII	GAAGA	5 cut(s)	515, 560, 704, 1080, 1082
MfeI	CAATTG	1 cut(s)	272
MhlI	GDGCHC	2 cut(s)	318, 749
MluCI	AATT	7 cut(s)	272, 399, 454, 478, 756, 975, 1033
MroI	TCCGGA	1 cut(s)	207
MseI	TTAA	5 cut(s)	359, 497, 791, 927, 950
MslI	CAYNNNNRTG	3 cut(s)	647, 879, 894
MspCI	CTTAAG	2 cut(s)	496, 926
MspI	CCGG	7 cut(s)	166, 208, 404, 426, 465, 531, 603
MspR9I	CCNGG	2 cut(s)	166, 1079
MunI	CAATTG	1 cut(s)	272
MvaI	CCWGG	1 cut(s)	1079
MwoI	GCNNNNNNNGC	1 cut(s)	666
NciI	CCSGG	1 cut(s)	166
NdeII	GATC	2 cut(s)	605, 801
NlaIII	CATG	8 cut(s)	79, 514, 646, 652, 817, 827, 1113, 1137
NmeAIII	GCCGAG	1 cut(s)	246
NmuCI	GTSAC	3 cut(s)	168, 421, 848
NspI	RCATGY	1 cut(s)	79
PaeI	GCATGC	1 cut(s)	79
PfeI	GAWTC	3 cut(s)	796, 817, 1082
PinAI	ACCGGT	2 cut(s)	425, 464
PkrI	GCNGC	1 cut(s)	629
PmaCI	CACGTG	1 cut(s)	319
PmlI	CACGTG	1 cut(s)	319
Ppu21I	YACGTR	1 cut(s)	319
PpuMI	RGGWCCY	3 cut(s)	278, 323, 677
PshAI	GACNNNNGTC	1 cut(s)	45
PsiI	TTATAA	1 cut(s)	1050
Psp5II	RGGWCCY	3 cut(s)	278, 323, 677
Psp6I	CCWGG	1 cut(s)	1077
PspCI	CACGTG	1 cut(s)	319
PspFI	CCCAGC	2 cut(s)	246, 340
PspGI	CCWGG	1 cut(s)	1077
PspOMI	GGGCCC	1 cut(s)	745
PspPI	GGNCC	9 cut(s)	24, 210, 278, 323, 677, 745, 746, 827, 1106
PspPPI	RGGWCCY	3 cut(s)	278, 323, 677
RseI	CAYNNNNRTG	3 cut(s)	647, 879, 894
SaqAI	TTAA	5 cut(s)	359, 497, 791, 927, 950
SatI	GCNGC	1 cut(s)	628
Sau3AI	GATC	2 cut(s)	605, 801
Sau96I	GGNCC	9 cut(s)	24, 210, 278, 323, 677, 745, 746, 827, 1106
ScrFI	CCNGG	2 cut(s)	166, 1079
SduI	GDGCHC	2 cut(s)	318, 749
SfaNI	GCATC	1 cut(s)	510
SinI	GGWCC	6 cut(s)	210, 278, 323, 677, 827, 1106
SmiMI	CAYNNNNRTG	3 cut(s)	647, 879, 894
SmlI	CTYRAG	5 cut(s)	445, 496, 572, 671, 926
SmoI	CTYRAG	5 cut(s)	445, 496, 572, 671, 926
SpeI	ACTAGT	2 cut(s)	295, 964
SphI	GCATGC	1 cut(s)	79
Sse9I	AATT	7 cut(s)	272, 399, 454, 478, 756, 975, 1033
SsiI	CCGC	3 cut(s)	141, 627, 1062
SspMI	CTAG	4 cut(s)	192, 296, 527, 965
StyD4I	CCNGG	2 cut(s)	164, 1077
StyI	CCWWGG	1 cut(s)	702
TaaI	ACNGT	3 cut(s)	227, 395, 419
TaiI	ACGT	3 cut(s)	45, 105, 321
TaqI	TCGA	4 cut(s)	369, 608, 842, 919
TasI	AATT	7 cut(s)	272, 399, 454, 478, 756, 975, 1033
TauI	GCSGC	1 cut(s)	630
TfiI	GAWTC	3 cut(s)	796, 817, 1082
Tru1I	TTAA	5 cut(s)	359, 497, 791, 927, 950
Tru9I	TTAA	5 cut(s)	359, 497, 791, 927, 950
TscAI	CASTG	1 cut(s)	34
TseFI	GTSAC	3 cut(s)	168, 421, 848
Tsp45I	GTSAC	3 cut(s)	168, 421, 848
TspDTI	ATGAA	5 cut(s)	797, 828, 830, 863, 1074
TspRI	CASTG	1 cut(s)	34
Vha464I	CTTAAG	2 cut(s)	496, 926
VpaK11BI	GGWCC	6 cut(s)	210, 278, 323, 677, 827, 1106
XapI	RAATTY	1 cut(s)	756
XceI	RCATGY	1 cut(s)	79
XspI	CTAG	4 cut(s)	192, 296, 527, 965

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.