Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0015057

Physical Location & Seq

Genomic Coordinates Forward (+)

6506633 .. 6511183

Gene Structure 4551 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G087800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1305 bp

ATGGCACTCATTTTCTCACCACTACTCTTGTTTCTATCTTTCATGTGTTTTAGGCTACTAGGGGTCATGCCTTTCACAGTCATCATGTCGGATTCCGGCGTGCCATCCGCTCTCGTGGACGGGCCACAAACCGGGTTCTCCATGAACAAAGACGGGGCCCGAACTGACACCCGTGAGCAAGAAGCGGTCTATGACATCATGCGGGCTACTGGTAATGATTGGGCCACTGACATTCCCGATGTGTGTCGTGGCCGGTGGCATGGAATTGAGTGCATGCCGGACAATAATGATGTCTACCACGTTGTTTCGCTCTCCTTCGGGGCGCTATCCGATGACACTGCATTCCCGACTTGTGACCCGACTCGGTCCCATATTTCACCATCCATCACTAAACTTCCCTACCTTCGGACCTTATTTTTCTACCGTTGTTTTAGTTACAATCCTCAGCCAATCCCGTCACTTTTGGGGCAATTGGGCGCCACACTACAAACTTTAGTGCTTAGGGAAAATGGGCATGTGGGTCCTATTCCTATTGAGCTGGGCAATCTCACCCGTTTAAAAGTTCTTGACCTCCACAAAAACAATCTCAACGGCTCAATTCCGGTGTGCCTGGCCCGGATGACCGGTCTAAGGTCGTTAGACCTGAGTGGGAACAAACTAACTTCAATACCCAATTTCAGCTTCCCAATTTTGAGCATTTTTGACCTGAGCCAAAACCTTCTAATGGGCTCAATTCCATCCAGCATTGGAGCCTGCCCTGGTCTTATCAAAATGGATTTGGGCCACAACCAACTCACCGGCCCGTTACCCTACTCCATTGGTACCTTGAAAAACCTAATGCTCATGGATCTAAGCTACAATCGCCTCAAGGGTCCACTTCCAATGTGGATTAGGAGTTTAATCTCACTTCAAACTTTGATCCTCAAAGGAAATCCAATGGGGCCCACACCAATTCCAAGTGATGGTTTTGATGGCATGAAGGGGTTGATGACCCTAATTTTATCTAACATGAATTTGCATGGTCCTATACCTTCATCCCTAGGCAAATTGCCAGGCCTTCGCGTGCTTCATCTTGATGGGAACAATTTCAATGGCTCAATCCCAACAAGCTTTAGAGAGCTCGAAAGTGTGAGTGAATTGAGATTGAATGATAATTGGCTCAGGGGCCCAATCCCATTTGGGAGAGAAATGGTTTGGAGGATGAGAAGGAAGCTTAGGGTTCATAACAATTCTGGGCTATGTTACAATGCCAATAGTGGGTTGGAAGATTCTGGCATTGGCCCCTGTGACACACCAAGGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0001101 GO:0002682 GO:0002831 GO:0003002 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0006950 GO:0006952 GO:0007275 GO:0007389 GO:0008150 GO:0008356 GO:0009605 GO:0009607 GO:0009620 GO:0009653 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009888 GO:0009987 GO:0010016 GO:0010026 GO:0010033 GO:0010090 GO:0010103 GO:0010374 GO:0010375 GO:0010376 GO:0016020 GO:0016043 GO:0030154 GO:0031224 GO:0031225 GO:0031347 GO:0032101 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033218 GO:0033612 GO:0033993 GO:0042221 GO:0042277 GO:0043207 GO:0043900 GO:0044425 GO:0045088 GO:0048367 GO:0048468 GO:0048583 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0050776 GO:0050789 GO:0050832 GO:0050896 GO:0051301 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071840 GO:0080134 GO:0090558 GO:0090626 GO:0090698 GO:0097305 GO:0097306 GO:0098542 GO:1900150 GO:1901700 GO:1901701 GO:1905034

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8

Protein Analysis

435

Amino Acids

47.71

Weight (kDa)

8.35

Isoelectric Point (pI)

40.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015057)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80080
fragaria_vesca	FvH4_6g29640
malus_domestica	MD17G1212400.v1.1
prunus_persica	Prupe.3G087800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0135241
rosa_laevigata	RLG00000019451
rosa_multiflora	Rmu_co8417127.1_g000001 Rmu_sc0002732.1_g000001 Rmu_sc0004443.1_g000015
rosa_roxburghii	Rroxscaffold_2G00109370
rosa_rugosa	Rorug02G0323900
rosa_samantha	Rh2AG370900 Rh2BG380600 Rh2CG359900 Rh2DG397200
rosa_wichuraiana	Rw2G030610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	821
AccB1I	GGYRCC	2 cut(s)	476, 821
AccB7I	CCANNNNNTGG	1 cut(s)	962
AccBSI	CCGCTC	1 cut(s)	110
AccI	GTMKAC	1 cut(s)	294
AccII	CGCG	1 cut(s)	1062
AciI	CCGC	3 cut(s)	108, 185, 202
AclWI	GGATC	2 cut(s)	855, 913
AcoI	YGGCCR	1 cut(s)	250
AcsI	RAATTY	1 cut(s)	1012
AcyI	GRCGYC	1 cut(s)	477
AfaI	GTAC	1 cut(s)	823
AfiI	CCNNNNNNNGG	6 cut(s)	131, 405, 630, 724, 962, 1257
AgeI	ACCGGT	1 cut(s)	623
AgsI	TTSAA	5 cut(s)	666, 829, 911, 1090, 1147
AjnI	CCWGG	3 cut(s)	609, 757, 1051
AjuI	GAANNNNNNNTTGG	2 cut(s)	665, 697
AluBI	AGCT	6 cut(s)	538, 681, 855, 1110, 1120, 1213
AluI	AGCT	6 cut(s)	538, 681, 855, 1110, 1120, 1213
Alw21I	GWGCWC	1 cut(s)	1122
AlwI	GGATC	2 cut(s)	855, 913
ApaI	GGGCCC	3 cut(s)	160, 945, 1169
ApoI	RAATTY	1 cut(s)	1012
AsiGI	ACCGGT	1 cut(s)	623
Asp700I	GAANNNNTTC	1 cut(s)	1085
Asp718I	GGTACC	1 cut(s)	821
AspA2I	CCTAGG	1 cut(s)	1039
AspLEI	GCGC	2 cut(s)	325, 479
AsuC2I	CCSGG	2 cut(s)	133, 616
AsuHPI	GGTGA	4 cut(s)	9, 369, 541, 787
AvaII	GGWCC	5 cut(s)	366, 408, 521, 872, 1022
AvrII	CCTAGG	1 cut(s)	1039
BaeGI	GKGCMC	3 cut(s)	160, 945, 1169
BanI	GGYRCC	2 cut(s)	476, 821
BanII	GRGCYC	5 cut(s)	160, 731, 945, 1122, 1169
BauI	CACGAG	1 cut(s)	113
Bbv12I	GWGCWC	1 cut(s)	1122
BbvCI	CCTCAGC	1 cut(s)	444
BccI	CCATC	7 cut(s)	112, 388, 392, 745, 956, 965, 1070
BceAI	ACGGC	1 cut(s)	607
BcgI	CGANNNNNNTGC	2 cut(s)	320, 354
BciT130I	CCWGG	3 cut(s)	611, 759, 1053
BcnI	CCSGG	2 cut(s)	133, 616
BfaI	CTAG	2 cut(s)	59, 1040
BfoI	RGCGCY	2 cut(s)	326, 480
BlnI	CCTAGG	1 cut(s)	1039
Bme1390I	CCNGG	5 cut(s)	133, 611, 616, 759, 1053
Bme18I	GGWCC	5 cut(s)	366, 408, 521, 872, 1022
BmrFI	CCNGG	5 cut(s)	133, 611, 616, 759, 1053
Bpu10I	CCTNAGC	5 cut(s)	444, 500, 707, 1160, 1214
BpuEI	CTTGAG	1 cut(s)	851
BpuMI	CCSGG	2 cut(s)	133, 616
BsaHI	GRCGYC	1 cut(s)	477
BsaJI	CCNNGG	3 cut(s)	757, 1039, 1295
BsaWI	WCCGGW	2 cut(s)	601, 623
Bsc4I	CCNNNNNNNGG	6 cut(s)	131, 405, 630, 724, 962, 1257
Bse118I	RCCGGY	3 cut(s)	252, 623, 797
Bse1I	ACTGG	1 cut(s)	214
BseBI	CCWGG	3 cut(s)	611, 759, 1053
BseDI	CCNNGG	3 cut(s)	757, 1039, 1295
BseGI	GGATG	6 cut(s)	104, 380, 624, 737, 1034, 1206
BseLI	CCNNNNNNNGG	6 cut(s)	131, 405, 630, 724, 962, 1257
BseMII	CTCAG	4 cut(s)	458, 635, 698, 1174
BseNI	ACTGG	1 cut(s)	214
BseSI	GKGCMC	3 cut(s)	160, 945, 1169
BseYI	CCCAGC	1 cut(s)	538
Bsh1236I	CGCG	1 cut(s)	1062
BshNI	GGYRCC	2 cut(s)	476, 821
BshTI	ACCGGT	1 cut(s)	623
BsiHKAI	GWGCWC	1 cut(s)	1122
BsiSI	CCGG	8 cut(s)	96, 132, 253, 278, 602, 616, 624, 798
BslFI	GGGAC	1 cut(s)	352
BslI	CCNNNNNNNGG	6 cut(s)	131, 405, 630, 724, 962, 1257
BsmFI	GGGAC	1 cut(s)	352
BsmI	GAATGC	1 cut(s)	341
Bsp120I	GGGCCC	3 cut(s)	156, 941, 1165
Bsp1286I	GDGCHC	5 cut(s)	160, 731, 945, 1122, 1169
Bsp143I	GATC	2 cut(s)	847, 918
BspACI	CCGC	3 cut(s)	108, 185, 202
BspCNI	CTCAG	4 cut(s)	457, 636, 699, 1173
BspFNI	CGCG	1 cut(s)	1062
BspPI	GGATC	2 cut(s)	855, 913
BspT107I	GGYRCC	2 cut(s)	476, 821
BsrBI	CCGCTC	1 cut(s)	110
BsrFI	RCCGGY	3 cut(s)	252, 623, 797
BsrI	ACTGG	1 cut(s)	214
BssAI	RCCGGY	3 cut(s)	252, 623, 797
BssECI	CCNNGG	3 cut(s)	757, 1039, 1295
BssMI	GATC	2 cut(s)	847, 918
BssNI	GRCGYC	1 cut(s)	477
BssSI	CACGAG	1 cut(s)	113
BssT1I	CCWWGG	2 cut(s)	1039, 1295
Bst2BI	CACGAG	1 cut(s)	113
Bst2UI	CCWGG	3 cut(s)	611, 759, 1053
Bst4CI	ACNGT	2 cut(s)	79, 425
BstACI	GRCGYC	1 cut(s)	477
BstC8I	GCNNGC	5 cut(s)	101, 204, 275, 754, 1064
BstDEI	CTNAG	8 cut(s)	444, 500, 629, 644, 707, 851, 1160, 1214
BstF5I	GGATG	6 cut(s)	104, 380, 624, 737, 1034, 1206
BstFNI	CGCG	1 cut(s)	1062
BstH2I	RGCGCY	2 cut(s)	326, 480
BstHHI	GCGC	2 cut(s)	325, 479
BstKTI	GATC	2 cut(s)	850, 921
BstMBI	GATC	2 cut(s)	847, 918
BstMWI	GCNNNNNNNGC	1 cut(s)	861
BstNI	CCWGG	3 cut(s)	611, 759, 1053
BstNSI	RCATGY	2 cut(s)	277, 518
BstSCI	CCNGG	5 cut(s)	131, 609, 614, 757, 1051
BstSLI	GKGCMC	3 cut(s)	160, 945, 1169
BstUI	CGCG	1 cut(s)	1062
BstX2I	RGATCY	1 cut(s)	847
BstYI	RGATCY	1 cut(s)	847
BtsCI	GGATG	6 cut(s)	104, 380, 624, 737, 1034, 1206
BtsI	GCAGTG	1 cut(s)	336
BtsIMutI	CAGTG	2 cut(s)	225, 336
Cac8I	GCNNGC	5 cut(s)	101, 204, 275, 754, 1064
CfoI	GCGC	2 cut(s)	325, 479
Cfr10I	RCCGGY	3 cut(s)	252, 623, 797
Csp6I	GTAC	1 cut(s)	822
CspAI	ACCGGT	1 cut(s)	623
CspCI	CAANNNNNGTGG	2 cut(s)	9, 44
CviQI	GTAC	1 cut(s)	822
DdeI	CTNAG	8 cut(s)	444, 500, 629, 644, 707, 851, 1160, 1214
DinI	GGCGCC	1 cut(s)	478
DpnI	GATC	2 cut(s)	849, 920
DpnII	GATC	2 cut(s)	847, 918
DraI	TTTAAA	1 cut(s)	558
EaeI	YGGCCR	1 cut(s)	250
Ecl136II	GAGCTC	1 cut(s)	1120
Eco130I	CCWWGG	2 cut(s)	1039, 1295
Eco147I	AGGCCT	1 cut(s)	1056
Eco24I	GRGCYC	5 cut(s)	160, 731, 945, 1122, 1169
Eco47I	GGWCC	5 cut(s)	366, 408, 521, 872, 1022
Eco53kI	GAGCTC	1 cut(s)	1120
EcoICRI	GAGCTC	1 cut(s)	1120
EcoO109I	RGGNCCY	4 cut(s)	156, 521, 941, 1165
EcoRII	CCWGG	3 cut(s)	609, 757, 1051
EcoT14I	CCWWGG	2 cut(s)	1039, 1295
EcoT38I	GRGCYC	5 cut(s)	160, 731, 945, 1122, 1169
EgeI	GGCGCC	1 cut(s)	478
EheI	GGCGCC	1 cut(s)	478
ErhI	CCWWGG	2 cut(s)	1039, 1295
FaqI	GGGAC	1 cut(s)	352
FauI	CCCGC	1 cut(s)	195
FblI	GTMKAC	1 cut(s)	294
FokI	GGATG	6 cut(s)	91, 367, 631, 724, 1021, 1213
FriOI	GRGCYC	5 cut(s)	160, 731, 945, 1122, 1169
FspBI	CTAG	2 cut(s)	59, 1040
GlaI	GCGC	2 cut(s)	324, 478
GsaI	CCCAGC	1 cut(s)	542
HaeII	RGCGCY	2 cut(s)	326, 480
HapII	CCGG	8 cut(s)	96, 132, 253, 278, 602, 616, 624, 798
HhaI	GCGC	2 cut(s)	325, 479
Hin1I	GRCGYC	1 cut(s)	477
Hin6I	GCGC	2 cut(s)	323, 477
HinP1I	GCGC	2 cut(s)	323, 477
HindIII	AAGCTT	2 cut(s)	1108, 1211
HinfI	GANTC	3 cut(s)	92, 361, 1268
HpaII	CCGG	8 cut(s)	96, 132, 253, 278, 602, 616, 624, 798
HphI	GGTGA	4 cut(s)	9, 369, 541, 787
Hpy166II	GTNNAC	3 cut(s)	118, 295, 875
Hpy188I	TCNGA	3 cut(s)	91, 331, 408
Hpy188III	TCNNGA	4 cut(s)	236, 346, 566, 1073
Hpy8I	GTNNAC	3 cut(s)	118, 295, 875
HpyAV	CCTTC	7 cut(s)	325, 413, 728, 973, 1041, 1067, 1200
HpyCH4III	ACNGT	2 cut(s)	79, 425
HpyCH4IV	ACGT	1 cut(s)	300
HpyCH4V	TGCA	3 cut(s)	273, 341, 1018
HpyF10VI	GCNNNNNNNGC	1 cut(s)	861
HpyF3I	CTNAG	8 cut(s)	444, 500, 629, 644, 707, 851, 1160, 1214
HpySE526I	ACGT	1 cut(s)	300
Hsp92I	GRCGYC	1 cut(s)	477
HspAI	GCGC	2 cut(s)	323, 477
KasI	GGCGCC	1 cut(s)	476
KpnI	GGTACC	1 cut(s)	825
Kzo9I	GATC	2 cut(s)	847, 918
LmnI	GCTCC	1 cut(s)	749
MaeI	CTAG	2 cut(s)	59, 1040
MaeII	ACGT	1 cut(s)	300
MaeIII	GTNAC	6 cut(s)	353, 434, 456, 804, 1241, 1286
MalI	GATC	2 cut(s)	849, 920
MbiI	CCGCTC	1 cut(s)	110
MboI	GATC	2 cut(s)	847, 918
MboII	GAAGA	1 cut(s)	1277
MfeI	CAATTG	1 cut(s)	470
MflI	RGATCY	1 cut(s)	847
MhlI	GDGCHC	5 cut(s)	160, 731, 945, 1122, 1169
Mly113I	GGCGCC	1 cut(s)	477
MlyI	GAGTC	1 cut(s)	355
MmeI	TCCRAC	2 cut(s)	69, 1242
MnlI	CCTC	5 cut(s)	453, 581, 875, 932, 1191
MroXI	GAANNNNTTC	1 cut(s)	1085
MseI	TTAA	2 cut(s)	557, 899
MslI	CAYNNNNRTG	1 cut(s)	1074
MspI	CCGG	8 cut(s)	96, 132, 253, 278, 602, 616, 624, 798
MspR9I	CCNGG	5 cut(s)	133, 611, 616, 759, 1053
MunI	CAATTG	1 cut(s)	470
Mva1269I	GAATGC	1 cut(s)	341
MvaI	CCWGG	3 cut(s)	611, 759, 1053
MvnI	CGCG	1 cut(s)	1062
MwoI	GCNNNNNNNGC	1 cut(s)	861
NarI	GGCGCC	1 cut(s)	477
NciI	CCSGG	2 cut(s)	133, 616
NdeII	GATC	2 cut(s)	847, 918
NmuCI	GTSAC	3 cut(s)	353, 456, 1286
NspI	RCATGY	2 cut(s)	277, 518
PaeI	GCATGC	1 cut(s)	277
PceI	AGGCCT	1 cut(s)	1056
PctI	GAATGC	1 cut(s)	341
PdmI	GAANNNNTTC	1 cut(s)	1085
PfeI	GAWTC	2 cut(s)	92, 1268
PflFI	GACNNNGTC	1 cut(s)	364
PflMI	CCANNNNNTGG	1 cut(s)	962
PinAI	ACCGGT	1 cut(s)	623
PleI	GAGTC	1 cut(s)	355
PluTI	GGCGCC	1 cut(s)	480
PpsI	GAGTC	1 cut(s)	355
PpuMI	RGGWCCY	1 cut(s)	521
Psp124BI	GAGCTC	1 cut(s)	1122
Psp5II	RGGWCCY	1 cut(s)	521
Psp6I	CCWGG	3 cut(s)	609, 757, 1051
PspFI	CCCAGC	1 cut(s)	538
PspGI	CCWGG	3 cut(s)	609, 757, 1051
PspOMI	GGGCCC	3 cut(s)	156, 941, 1165
PspPPI	RGGWCCY	1 cut(s)	521
PsuI	RGATCY	1 cut(s)	847
PsyI	GACNNNGTC	1 cut(s)	364
RsaI	GTAC	1 cut(s)	823
RsaNI	GTAC	1 cut(s)	822
RseI	CAYNNNNRTG	1 cut(s)	1074
SacI	GAGCTC	1 cut(s)	1122
SaqAI	TTAA	2 cut(s)	557, 899
Sau3AI	GATC	2 cut(s)	847, 918
SchI	GAGTC	1 cut(s)	355
ScrFI	CCNGG	5 cut(s)	133, 611, 616, 759, 1053
SduI	GDGCHC	5 cut(s)	160, 731, 945, 1122, 1169
SfoI	GGCGCC	1 cut(s)	478
SinI	GGWCC	5 cut(s)	366, 408, 521, 872, 1022
SmiMI	CAYNNNNRTG	1 cut(s)	1074
SmlI	CTYRAG	1 cut(s)	866
SmoI	CTYRAG	1 cut(s)	866
SphI	GCATGC	1 cut(s)	277
SseBI	AGGCCT	1 cut(s)	1056
SsiI	CCGC	3 cut(s)	108, 185, 202
SspDI	GGCGCC	1 cut(s)	476
SspMI	CTAG	2 cut(s)	59, 1040
SstI	GAGCTC	1 cut(s)	1122
StuI	AGGCCT	1 cut(s)	1056
StyD4I	CCNGG	5 cut(s)	131, 609, 614, 757, 1051
StyI	CCWWGG	2 cut(s)	1039, 1295
TaaI	ACNGT	2 cut(s)	79, 425
TaiI	ACGT	1 cut(s)	303
TaqI	TCGA	1 cut(s)	1122
TaqII	GACCGA	1 cut(s)	354
TfiI	GAWTC	2 cut(s)	92, 1268
Tru1I	TTAA	2 cut(s)	557, 899
Tru9I	TTAA	2 cut(s)	557, 899
TscAI	CASTG	2 cut(s)	232, 343
TseFI	GTSAC	3 cut(s)	353, 456, 1286
Tsp45I	GTSAC	3 cut(s)	353, 456, 1286
TspDTI	ATGAA	7 cut(s)	31, 158, 992, 1023, 1025, 1058, 1211
TspRI	CASTG	2 cut(s)	232, 343
Tth111I	GACNNNGTC	1 cut(s)	364
Van91I	CCANNNNNTGG	1 cut(s)	962
VpaK11BI	GGWCC	5 cut(s)	366, 408, 521, 872, 1022
XapI	RAATTY	1 cut(s)	1012
XceI	RCATGY	2 cut(s)	277, 518
XcmI	CCANNNNNNNNNTGG	2 cut(s)	882, 1258
XmaJI	CCTAGG	1 cut(s)	1039
XmiI	GTMKAC	1 cut(s)	294
XmnI	GAANNNNTTC	1 cut(s)	1085
XspI	CTAG	2 cut(s)	59, 1040

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.