Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004443.1

Orthogroup ID

OG0015057

Physical Location & Seq

Genomic Coordinates Forward (+)

40282 .. 41532

Gene Structure 1251 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004443.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1251 bp

atgtccgattcaggcgagcccaacgcccttgtagaggggccgcagaccgggttctccatcaacaaagacggggctcgaaccgatgcccgtgagcaagaagcggtctacgacatcatgcgtgccacgggcaacgattgggccactgacatctcagacgtgtgtcgtggccgttggcacgggattgagtgcatgcccgacaagaacgatattttccacgtcgtctccctctcctttggagccttgtcagacgacaccgccttcccgacttgcgacccaacccggtcacatatttcgccgtccatcactaggctccattacctccggaccctctttttctaccgttgtttcagttacaacccccagccaatcccgtcatttctcggccaattgggtcccacactgcaaacactagtgcttagagacaacgggcacgtgggtcctatacctattgagctgggcaatctcacccgtttaaaggttctcgacctccacaaaaataatctcaacggttcaattccggtctcactaaaccgtgtcaccggtctaaggtcgttagacttgagctgtaattctctaaccggttcaatacccaatttcagcttccccatcttaagcatccttgacatgagccaaaatcttctagccggttcaatcccctcccaaatcggagcctgcctttctcttctcaagatggatttgagccacaactggctcaccggatcgatacccaactccatcggcggcctaaaagacctcatgctcatggatttgagctacaatcgcctcaagggtcctctcccaatgcggtttggaaccttggtgtctcttcaaactctgaacctcaaaggcaaccctatgggcccgacacaaattccaagtgaaggatttgaaggtatgaagggtttaatgattctgatcttatcaaacatgaatctacatggtcctataccttcatcgataggtcacttgccaagccttcgtgtgcttcatcttgatggcaaccacttgaatggttcaatcccaaatagctttcgagagcttaagagcgttggtgagttgagattaaacgacaatggactagttgggtcaattccatttgggagagaaatggtttggaggatgagaaggaagcttaggctttacaataattcagggctttgttataatgctaatagcggttttgaagacaacctggattcatcttccagttttgggattggtccatgcgacccaccgagaccgaggccatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0001101 GO:0002682 GO:0002831 GO:0003002 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0006950 GO:0006952 GO:0007275 GO:0007389 GO:0008150 GO:0008356 GO:0009605 GO:0009607 GO:0009620 GO:0009653 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009888 GO:0009987 GO:0010016 GO:0010026 GO:0010033 GO:0010090 GO:0010103 GO:0010374 GO:0010375 GO:0010376 GO:0016020 GO:0016043 GO:0030154 GO:0031224 GO:0031225 GO:0031347 GO:0032101 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033218 GO:0033612 GO:0033993 GO:0042221 GO:0042277 GO:0043207 GO:0043900 GO:0044425 GO:0045088 GO:0048367 GO:0048468 GO:0048583 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0050776 GO:0050789 GO:0050832 GO:0050896 GO:0051301 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071840 GO:0080134 GO:0090558 GO:0090626 GO:0090698 GO:0097305 GO:0097306 GO:0098542 GO:1900150 GO:1901700 GO:1901701 GO:1905034

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8

Protein Analysis

416

Amino Acids

45.56

Weight (kDa)

7.16

Isoelectric Point (pI)

40.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015057)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80080
fragaria_vesca	FvH4_6g29640
malus_domestica	MD17G1212400.v1.1
prunus_persica	Prupe.3G087800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0135241
rosa_laevigata	RLG00000019451
rosa_multiflora	Rmu_co8417127.1_g000001 Rmu_sc0002732.1_g000001 Rmu_sc0004443.1_g000015
rosa_roxburghii	Rroxscaffold_2G00109370
rosa_rugosa	Rorug02G0323900
rosa_samantha	Rh2AG370900 Rh2BG380600 Rh2CG359900 Rh2DG397200
rosa_wichuraiana	Rw2G030610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1164
AccI	GTMKAC	1 cut(s)	105
AccIII	TCCGGA	1 cut(s)	321
AciI	CCGC	6 cut(s)	41, 101, 255, 741, 805, 1176
AclWI	GGATC	1 cut(s)	727
AcoI	YGGCCR	2 cut(s)	166, 382
AcsI	RAATTY	1 cut(s)	870
AcvI	CACGTG	1 cut(s)	433
AfiI	CCNNNNNNNGG	7 cut(s)	34, 47, 306, 475, 546, 881, 1212
AflII	CTTAAG	2 cut(s)	610, 1040
AflIII	ACRYGT	1 cut(s)	156
AgeI	ACCGGT	2 cut(s)	539, 578
AgsI	TTSAA	8 cut(s)	513, 585, 651, 830, 890, 1009, 1017, 1184
AhlI	ACTAGT	2 cut(s)	409, 1078
AjiI	CACGTC	2 cut(s)	157, 217
AjnI	CCWGG	1 cut(s)	1191
AjuI	GAANNNNNNNTTGG	2 cut(s)	584, 616
AluBI	AGCT	7 cut(s)	454, 564, 600, 774, 1029, 1039, 1132
AluI	AGCT	7 cut(s)	454, 564, 600, 774, 1029, 1039, 1132
Alw26I	GTCTC	5 cut(s)	226, 414, 526, 828, 1231
AlwI	GGATC	1 cut(s)	727
Aor13HI	TCCGGA	1 cut(s)	321
AoxI	GGCC	7 cut(s)	38, 138, 166, 382, 742, 859, 1244
ApaI	GGGCCC	1 cut(s)	863
ApoI	RAATTY	1 cut(s)	870
AsiGI	ACCGGT	2 cut(s)	539, 578
AsuC2I	CCSGG	2 cut(s)	49, 280
AsuHPI	GGTGA	4 cut(s)	457, 529, 706, 1064
AvaII	GGWCC	6 cut(s)	324, 392, 437, 791, 941, 1220
BaeGI	GKGCMC	2 cut(s)	432, 863
BanII	GRGCYC	3 cut(s)	21, 76, 863
BbrPI	CACGTG	1 cut(s)	433
BbsI	GAAGAC	1 cut(s)	1191
BccI	CCATC	6 cut(s)	65, 308, 614, 685, 743, 989
BceAI	ACGGC	2 cut(s)	153, 280
BciT130I	CCWGG	1 cut(s)	1193
BcnI	CCSGG	2 cut(s)	49, 280
BcoDI	GTCTC	5 cut(s)	226, 414, 526, 828, 1231
BcuI	ACTAGT	2 cut(s)	409, 1078
BfaI	CTAG	4 cut(s)	306, 410, 641, 1079
BfrI	CTTAAG	2 cut(s)	610, 1040
BisI	GCNGC	2 cut(s)	41, 742
BlsI	GCNGC	2 cut(s)	42, 743
Bme1390I	CCNGG	3 cut(s)	49, 280, 1193
Bme18I	GGWCC	6 cut(s)	324, 392, 437, 791, 941, 1220
BmgBI	CACGTC	2 cut(s)	157, 217
BmrFI	CCNGG	3 cut(s)	49, 280, 1193
BmsI	GCATC	2 cut(s)	73, 624
BoxI	GACNNNNGTC	1 cut(s)	159
BpiI	GAAGAC	1 cut(s)	1191
Bpu10I	CCTNAGC	1 cut(s)	1133
BpuEI	CTTGAG	3 cut(s)	580, 671, 770
BpuMI	CCSGG	2 cut(s)	49, 280
Bsa29I	ATCGAT	2 cut(s)	722, 956
BsaAI	YACGTR	1 cut(s)	433
BsaBI	GATNNNNATC	1 cut(s)	914
BsaI	GGTCTC	2 cut(s)	526, 1231
BsaJI	CCNNGG	3 cut(s)	123, 816, 1241
BsaWI	WCCGGW	5 cut(s)	321, 517, 539, 578, 716
BsaXI	ACNNNNNCTCC	2 cut(s)	206, 236
Bsc4I	CCNNNNNNNGG	7 cut(s)	34, 47, 306, 475, 546, 881, 1212
Bse118I	RCCGGY	3 cut(s)	539, 578, 644
Bse1I	ACTGG	2 cut(s)	713, 1206
Bse8I	GATNNNNATC	1 cut(s)	914
BseAI	TCCGGA	1 cut(s)	321
BseBI	CCWGG	1 cut(s)	1193
BseCI	ATCGAT	2 cut(s)	722, 956
BseDI	CCNNGG	3 cut(s)	123, 816, 1241
BseGI	GGATG	2 cut(s)	615, 1125
BseJI	GATNNNNATC	1 cut(s)	914
BseLI	CCNNNNNNNGG	7 cut(s)	34, 47, 306, 475, 546, 881, 1212
BseMII	CTCAG	1 cut(s)	165
BseNI	ACTGG	2 cut(s)	713, 1206
BseSI	GKGCMC	2 cut(s)	432, 863
BseYI	CCCAGC	2 cut(s)	360, 454
BshFI	GGCC	7 cut(s)	40, 140, 168, 384, 744, 861, 1246
BshTI	ACCGGT	2 cut(s)	539, 578
BshVI	ATCGAT	2 cut(s)	722, 956
BsiSI	CCGG	8 cut(s)	48, 280, 322, 518, 540, 579, 645, 717
BslFI	GGGAC	1 cut(s)	378
BslI	CCNNNNNNNGG	7 cut(s)	34, 47, 306, 475, 546, 881, 1212
BsmAI	GTCTC	5 cut(s)	226, 414, 526, 828, 1231
BsmBI	CGTCTC	1 cut(s)	226
BsmFI	GGGAC	1 cut(s)	378
BsnI	GGCC	7 cut(s)	40, 140, 168, 384, 744, 861, 1246
Bso31I	GGTCTC	2 cut(s)	526, 1231
Bsp120I	GGGCCC	1 cut(s)	859
Bsp1286I	GDGCHC	4 cut(s)	21, 76, 432, 863
Bsp13I	TCCGGA	1 cut(s)	321
Bsp143I	GATC	2 cut(s)	719, 915
BspACI	CCGC	6 cut(s)	41, 101, 255, 741, 805, 1176
BspANI	GGCC	7 cut(s)	40, 140, 168, 384, 744, 861, 1246
BspCNI	CTCAG	1 cut(s)	164
BspDI	ATCGAT	2 cut(s)	722, 956
BspEI	TCCGGA	1 cut(s)	321
BspPI	GGATC	1 cut(s)	727
BspTI	CTTAAG	2 cut(s)	610, 1040
BspTNI	GGTCTC	2 cut(s)	526, 1231
BsrFI	RCCGGY	3 cut(s)	539, 578, 644
BsrI	ACTGG	2 cut(s)	713, 1206
BssAI	RCCGGY	3 cut(s)	539, 578, 644
BssECI	CCNNGG	3 cut(s)	123, 816, 1241
BssMI	GATC	2 cut(s)	719, 915
BssT1I	CCWWGG	1 cut(s)	816
Bst2UI	CCWGG	1 cut(s)	1193
Bst4CI	ACNGT	3 cut(s)	341, 509, 533
Bst6I	CTCTTC	2 cut(s)	687, 831
BstAFI	CTTAAG	2 cut(s)	610, 1040
BstBAI	YACGTR	1 cut(s)	433
BstC8I	GCNNGC	4 cut(s)	17, 120, 191, 673
BstDEI	CTNAG	4 cut(s)	151, 416, 545, 1133
BstDSI	CCRYGG	1 cut(s)	123
BstENI	CCTNNNNNAGG	1 cut(s)	32
BstF5I	GGATG	2 cut(s)	615, 1125
BstKTI	GATC	2 cut(s)	722, 918
BstMAI	GTCTC	5 cut(s)	226, 414, 526, 828, 1231
BstMBI	GATC	2 cut(s)	719, 915
BstMWI	GCNNNNNNNGC	1 cut(s)	780
BstNI	CCWGG	1 cut(s)	1193
BstNSI	RCATGY	1 cut(s)	193
BstPAI	GACNNNNGTC	1 cut(s)	159
BstSCI	CCNGG	3 cut(s)	47, 278, 1191
BstSLI	GKGCMC	2 cut(s)	432, 863
BstV2I	GAAGAC	1 cut(s)	1191
BstXI	CCANNNNNNTGG	1 cut(s)	1010
Bsu15I	ATCGAT	2 cut(s)	722, 956
BsuRI	GGCC	7 cut(s)	40, 140, 168, 384, 744, 861, 1246
BsuTUI	ATCGAT	2 cut(s)	722, 956
BtgI	CCRYGG	1 cut(s)	123
BtrI	CACGTC	2 cut(s)	157, 217
BtsCI	GGATG	2 cut(s)	615, 1125
BtsI	GCAGTG	1 cut(s)	398
BtsIMutI	CAGTG	2 cut(s)	141, 398
Cac8I	GCNNGC	4 cut(s)	17, 120, 191, 673
Cfr10I	RCCGGY	3 cut(s)	539, 578, 644
ClaI	ATCGAT	2 cut(s)	722, 956
CspAI	ACCGGT	2 cut(s)	539, 578
CviAII	CATG	9 cut(s)	115, 190, 625, 757, 763, 928, 938, 1224, 1248
DdeI	CTNAG	4 cut(s)	151, 416, 545, 1133
DpnI	GATC	2 cut(s)	721, 917
DpnII	GATC	2 cut(s)	719, 915
DraI	TTTAAA	1 cut(s)	474
EaeI	YGGCCR	2 cut(s)	166, 382
Eam1104I	CTCTTC	2 cut(s)	687, 831
EarI	CTCTTC	2 cut(s)	687, 831
Eco130I	CCWWGG	1 cut(s)	816
Eco24I	GRGCYC	3 cut(s)	21, 76, 863
Eco31I	GGTCTC	2 cut(s)	526, 1231
Eco47I	GGWCC	6 cut(s)	324, 392, 437, 791, 941, 1220
Eco72I	CACGTG	1 cut(s)	433
EcoNI	CCTNNNNNAGG	1 cut(s)	32
EcoO109I	RGGNCCY	3 cut(s)	392, 437, 791
EcoRII	CCWGG	1 cut(s)	1191
EcoT14I	CCWWGG	1 cut(s)	816
EcoT38I	GRGCYC	3 cut(s)	21, 76, 863
ErhI	CCWWGG	1 cut(s)	816
Esp3I	CGTCTC	1 cut(s)	226
FaeI	CATG	9 cut(s)	118, 193, 628, 760, 766, 931, 941, 1227, 1251
FaqI	GGGAC	1 cut(s)	378
FatI	CATG	9 cut(s)	114, 189, 624, 756, 762, 927, 937, 1223, 1247
FblI	GTMKAC	1 cut(s)	105
Fnu4HI	GCNGC	2 cut(s)	41, 742
FokI	GGATG	2 cut(s)	602, 1132
FriOI	GRGCYC	3 cut(s)	21, 76, 863
Fsp4HI	GCNGC	2 cut(s)	41, 742
FspBI	CTAG	4 cut(s)	306, 410, 641, 1079
GluI	GCNGC	2 cut(s)	41, 742
GsaI	CCCAGC	2 cut(s)	364, 458
HaeIII	GGCC	7 cut(s)	40, 140, 168, 384, 744, 861, 1246
HapII	CCGG	8 cut(s)	48, 280, 322, 518, 540, 579, 645, 717
Hin1II	CATG	9 cut(s)	118, 193, 628, 760, 766, 931, 941, 1227, 1251
HindIII	AAGCTT	1 cut(s)	1130
HinfI	GANTC	4 cut(s)	8, 910, 931, 1196
HpaII	CCGG	8 cut(s)	48, 280, 322, 518, 540, 579, 645, 717
HphI	GGTGA	4 cut(s)	457, 529, 706, 1064
Hpy166II	GTNNAC	1 cut(s)	106
Hpy188I	TCNGA	6 cut(s)	7, 154, 247, 668, 837, 915
Hpy188III	TCNNGA	6 cut(s)	262, 322, 482, 688, 992, 1034
Hpy8I	GTNNAC	1 cut(s)	106
Hpy99I	CGWCG	1 cut(s)	221
HpyAV	CCTTC	7 cut(s)	268, 875, 884, 892, 960, 986, 1119
HpyCH4III	ACNGT	3 cut(s)	341, 509, 533
HpyCH4IV	ACGT	3 cut(s)	156, 216, 432
HpyCH4V	TGCA	2 cut(s)	189, 403
HpyF10VI	GCNNNNNNNGC	1 cut(s)	780
HpyF3I	CTNAG	4 cut(s)	151, 416, 545, 1133
HpySE526I	ACGT	3 cut(s)	156, 216, 432
Hsp92II	CATG	9 cut(s)	118, 193, 628, 760, 766, 931, 941, 1227, 1251
KflI	GGGWCCC	1 cut(s)	392
Kpn2I	TCCGGA	1 cut(s)	321
Kzo9I	GATC	2 cut(s)	719, 915
LmnI	GCTCC	3 cut(s)	236, 315, 668
LweI	GCATC	2 cut(s)	73, 624
MaeI	CTAG	4 cut(s)	306, 410, 641, 1079
MaeII	ACGT	3 cut(s)	156, 216, 432
MaeIII	GTNAC	4 cut(s)	282, 350, 535, 962
MalI	GATC	2 cut(s)	721, 917
MboI	GATC	2 cut(s)	719, 915
MboII	GAAGA	5 cut(s)	629, 674, 818, 1194, 1196
MfeI	CAATTG	1 cut(s)	386
MhlI	GDGCHC	4 cut(s)	21, 76, 432, 863
MluCI	AATT	7 cut(s)	386, 513, 568, 592, 870, 1089, 1147
MroI	TCCGGA	1 cut(s)	321
MseI	TTAA	5 cut(s)	473, 611, 905, 1041, 1064
MslI	CAYNNNNRTG	3 cut(s)	761, 993, 1008
MspCI	CTTAAG	2 cut(s)	610, 1040
MspI	CCGG	8 cut(s)	48, 280, 322, 518, 540, 579, 645, 717
MspR9I	CCNGG	3 cut(s)	49, 280, 1193
MunI	CAATTG	1 cut(s)	386
MvaI	CCWGG	1 cut(s)	1193
MwoI	GCNNNNNNNGC	1 cut(s)	780
NciI	CCSGG	2 cut(s)	49, 280
NdeII	GATC	2 cut(s)	719, 915
NlaIII	CATG	9 cut(s)	118, 193, 628, 760, 766, 931, 941, 1227, 1251
NmeAIII	GCCGAG	1 cut(s)	360
NmuCI	GTSAC	3 cut(s)	282, 535, 962
NspI	RCATGY	1 cut(s)	193
PaeI	GCATGC	1 cut(s)	193
PfeI	GAWTC	4 cut(s)	8, 910, 931, 1196
PinAI	ACCGGT	2 cut(s)	539, 578
PkrI	GCNGC	2 cut(s)	42, 743
PmaCI	CACGTG	1 cut(s)	433
PmlI	CACGTG	1 cut(s)	433
Ppu21I	YACGTR	1 cut(s)	433
PpuMI	RGGWCCY	3 cut(s)	392, 437, 791
PshAI	GACNNNNGTC	1 cut(s)	159
PsiI	TTATAA	1 cut(s)	1164
Psp5II	RGGWCCY	3 cut(s)	392, 437, 791
Psp6I	CCWGG	1 cut(s)	1191
PspCI	CACGTG	1 cut(s)	433
PspFI	CCCAGC	2 cut(s)	360, 454
PspGI	CCWGG	1 cut(s)	1191
PspOMI	GGGCCC	1 cut(s)	859
PspPPI	RGGWCCY	3 cut(s)	392, 437, 791
RseI	CAYNNNNRTG	3 cut(s)	761, 993, 1008
SaqAI	TTAA	5 cut(s)	473, 611, 905, 1041, 1064
SatI	GCNGC	2 cut(s)	41, 742
Sau3AI	GATC	2 cut(s)	719, 915
ScrFI	CCNGG	3 cut(s)	49, 280, 1193
SduI	GDGCHC	4 cut(s)	21, 76, 432, 863
SfaNI	GCATC	2 cut(s)	73, 624
SinI	GGWCC	6 cut(s)	324, 392, 437, 791, 941, 1220
SmiMI	CAYNNNNRTG	3 cut(s)	761, 993, 1008
SmlI	CTYRAG	5 cut(s)	559, 610, 686, 785, 1040
SmoI	CTYRAG	5 cut(s)	559, 610, 686, 785, 1040
SpeI	ACTAGT	2 cut(s)	409, 1078
SphI	GCATGC	1 cut(s)	193
Sse9I	AATT	7 cut(s)	386, 513, 568, 592, 870, 1089, 1147
SsiI	CCGC	6 cut(s)	41, 101, 255, 741, 805, 1176
SspMI	CTAG	4 cut(s)	306, 410, 641, 1079
StyD4I	CCNGG	3 cut(s)	47, 278, 1191
StyI	CCWWGG	1 cut(s)	816
TaaI	ACNGT	3 cut(s)	341, 509, 533
TaiI	ACGT	3 cut(s)	159, 219, 435
TaqI	TCGA	5 cut(s)	76, 483, 722, 956, 1033
TasI	AATT	7 cut(s)	386, 513, 568, 592, 870, 1089, 1147
TauI	GCSGC	2 cut(s)	43, 744
TfiI	GAWTC	4 cut(s)	8, 910, 931, 1196
Tru1I	TTAA	5 cut(s)	473, 611, 905, 1041, 1064
Tru9I	TTAA	5 cut(s)	473, 611, 905, 1041, 1064
TscAI	CASTG	2 cut(s)	148, 405
TseFI	GTSAC	3 cut(s)	282, 535, 962
Tsp45I	GTSAC	3 cut(s)	282, 535, 962
TspDTI	ATGAA	5 cut(s)	911, 942, 944, 977, 1188
TspRI	CASTG	2 cut(s)	148, 405
Vha464I	CTTAAG	2 cut(s)	610, 1040
VpaK11BI	GGWCC	6 cut(s)	324, 392, 437, 791, 941, 1220
XagI	CCTNNNNNAGG	1 cut(s)	32
XapI	RAATTY	1 cut(s)	870
XceI	RCATGY	1 cut(s)	193
XmiI	GTMKAC	1 cut(s)	105
XspI	CTAG	4 cut(s)	306, 410, 641, 1079

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.