MD17G1216200.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0016891
Physical Location & Seq
Forward (+)
26307229 .. 26308277
1049 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1216200.v1.1.491

Sequence Viewer

Length: 798 bp
ATGATGACACTACAAACACCACCGTCTTTCTTACAAGTGAAGCAAAATCATGGAAGCAATCATAAGCCACTACCCCCCACATGTTCTTTAACCAATTCTTCTCTATCGTATGCCCTAATATTCTTGTCAAATTATAAAAATTCCAAGGAAAATCATTATACTTTCTGCAATGGAAATTGTTACACGGTGAGTTCCAAAACATTTTCATCGACGAAAGAGCTTTCGAGAATGAAGTGTGCAAGTGCAAGCACTGGTGAGGAAGGAATTGGCGACAATTGTTCTATGTTGGTGCGCCAAAGGATAGGAAAGGAAAGAGAATTTACTCGGTGCAAGTTGAAGACTCTGTCAAGTGGTAAAAAACCATTGCAGGATTCAAGCGCTTCGGATTCTAAAAAGGCAGAGAAGAAAAAGCTGCTGCTTGGAGGTGGTTCAACAAGTAAGGCTCTCAATGTTTCCGGTAAGGGGAAGGCTGCAGTGTGCACTGGTGAAGTTGAAGAACTAAACGAGCGACTGAGAGTTCTTGAAGAAGAAACTGAAACTATGAAGCAAGAAATGTTGGAGATTGCAGAAGAGAGAAACAAGTTGATGAAGGAGATATATCAGCAGTTTCAGATGCTAGAAATTGATCCCAGATGTTTGGCAGCAATAGAACTCAAGTCTATCGATGGAAACACAAGTATCTACTCGTCACAGGATCAAAGAATGGGAGTTAGTTTGTCACATATTTTACGCCAAGATCAAAATCCATCTCTGGTCAACAGAAATCTTAGAGCTAATAATTTGGCGATGCTCATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

266

Amino Acids

29.55

Weight (kDa)

9.03

Isoelectric Point (pI)

45.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016891)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g29300
malus_domestica MD17G1216200.v1.1
prunus_persica Prupe.3G092300_v2.0.a1
pyrus_communis pycom17g22080
rosa_chinensis RchiOBHm_Chr2g0134481
rosa_laevigata RLG00000019395
rosa_multiflora Rmu_sc0005464.1_g000026
rosa_roxburghii Rroxscaffold_2G00110180
rosa_rugosa Rorug02G0317400
rosa_samantha Rh2AG375800 Rh2BG375800 Rh2CG354000 Rh2DG393100
rosa_wichuraiana Rw2G030140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 135
AclWI GGATC 2 cut(s) 620, 702
AcsI RAATTY 2 cut(s) 139, 317
AfeI AGCGCT 1 cut(s) 379
AfiI CCNNNNNNNGG 1 cut(s) 462
AflIII ACRYGT 1 cut(s) 80
AgsI TTSAA 5 cut(s) 337, 375, 432, 494, 524
AluBI AGCT 3 cut(s) 220, 412, 773
AluI AGCT 3 cut(s) 220, 412, 773
Alw21I GWGCWC 1 cut(s) 482
Alw44I GTGCAC 1 cut(s) 478
AlwI GGATC 2 cut(s) 620, 702
Aor51HI AGCGCT 1 cut(s) 379
ApaLI GTGCAC 1 cut(s) 478
ApeKI GCWGC 4 cut(s) 412, 415, 470, 641
ApoI RAATTY 2 cut(s) 139, 317
AspLEI GCGC 2 cut(s) 294, 380
AsuHPI GGTGA 3 cut(s) 199, 266, 497
BaeGI GKGCMC 1 cut(s) 482
BaeI ACNNNNGTAYC 2 cut(s) 661, 694
BbsI GAAGAC 1 cut(s) 344
Bbv12I GWGCWC 1 cut(s) 482
BbvI GCAGC 4 cut(s) 399, 402, 457, 653
BccI CCATC 2 cut(s) 659, 754
BfaI CTAG 1 cut(s) 617
BfmI CTRYAG 1 cut(s) 471
BfoI RGCGCY 1 cut(s) 381
BisI GCNGC 4 cut(s) 413, 416, 471, 642
BlsI GCNGC 4 cut(s) 414, 417, 472, 643
BmsI GCATC 2 cut(s) 603, 777
BpiI GAAGAC 1 cut(s) 344
BpuEI CTTGAG 1 cut(s) 638
Bsa29I ATCGAT 1 cut(s) 663
BsaBI GATNNNNATC 1 cut(s) 741
BsaJI CCNNGG 1 cut(s) 144
BsaWI WCCGGW 1 cut(s) 455
Bsc4I CCNNNNNNNGG 1 cut(s) 462
Bse1I ACTGG 2 cut(s) 256, 487
Bse3DI GCAATG 2 cut(s) 175, 362
Bse8I GATNNNNATC 1 cut(s) 741
BseCI ATCGAT 1 cut(s) 663
BseDI CCNNGG 1 cut(s) 144
BseJI GATNNNNATC 1 cut(s) 741
BseLI CCNNNNNNNGG 1 cut(s) 462
BseMI GCAATG 2 cut(s) 175, 362
BseMII CTCAG 1 cut(s) 503
BseNI ACTGG 2 cut(s) 256, 487
BseSI GKGCMC 1 cut(s) 482
BseXI GCAGC 4 cut(s) 399, 402, 457, 653
BshVI ATCGAT 1 cut(s) 663
BsiHKAI GWGCWC 1 cut(s) 482
BsiSI CCGG 1 cut(s) 456
BslI CCNNNNNNNGG 1 cut(s) 462
Bsp1286I GDGCHC 1 cut(s) 482
Bsp143I GATC 3 cut(s) 625, 694, 736
BspCNI CTCAG 1 cut(s) 504
BspDI ATCGAT 1 cut(s) 663
BspMAI CTGCAG 1 cut(s) 475
BspPI GGATC 2 cut(s) 620, 702
BsrDI GCAATG 2 cut(s) 175, 362
BsrI ACTGG 2 cut(s) 256, 487
BssECI CCNNGG 1 cut(s) 144
BssMI GATC 3 cut(s) 625, 694, 736
BssT1I CCWWGG 1 cut(s) 144
Bst4CI ACNGT 2 cut(s) 24, 187
Bst6I CTCTTC 1 cut(s) 564
BstC8I GCNNGC 1 cut(s) 247
BstDEI CTNAG 2 cut(s) 512, 767
BstH2I RGCGCY 1 cut(s) 381
BstHHI GCGC 2 cut(s) 294, 380
BstKTI GATC 3 cut(s) 628, 697, 739
BstMBI GATC 3 cut(s) 625, 694, 736
BstNSI RCATGY 1 cut(s) 84
BstSFI CTRYAG 1 cut(s) 471
BstSLI GKGCMC 1 cut(s) 482
BstV1I GCAGC 4 cut(s) 399, 402, 457, 653
BstV2I GAAGAC 1 cut(s) 344
BstXI CCANNNNNNTGG 1 cut(s) 637
Bsu15I ATCGAT 1 cut(s) 663
BsuTUI ATCGAT 1 cut(s) 663
BtsI GCAGTG 1 cut(s) 480
BtsIMutI CAGTG 3 cut(s) 249, 480, 480
Cac8I GCNNGC 1 cut(s) 247
CfoI GCGC 2 cut(s) 294, 380
ClaI ATCGAT 1 cut(s) 663
CviAII CATG 3 cut(s) 50, 81, 793
CviJI RGCY 6 cut(s) 67, 220, 412, 443, 470, 773
CviKI_1 RGCY 6 cut(s) 67, 220, 412, 443, 470, 773
DdeI CTNAG 2 cut(s) 512, 767
DpnI GATC 3 cut(s) 627, 696, 738
DpnII GATC 3 cut(s) 625, 694, 736
Eam1104I CTCTTC 1 cut(s) 564
EarI CTCTTC 1 cut(s) 564
Eco130I CCWWGG 1 cut(s) 144
Eco47III AGCGCT 1 cut(s) 379
EcoT14I CCWWGG 1 cut(s) 144
ErhI CCWWGG 1 cut(s) 144
FaeI CATG 3 cut(s) 53, 84, 796
FatI CATG 3 cut(s) 49, 80, 792
Fnu4HI GCNGC 4 cut(s) 413, 416, 471, 642
Fsp4HI GCNGC 4 cut(s) 413, 416, 471, 642
FspBI CTAG 1 cut(s) 617
GlaI GCGC 2 cut(s) 293, 379
GluI GCNGC 4 cut(s) 413, 416, 471, 642
HaeII RGCGCY 1 cut(s) 381
HapII CCGG 1 cut(s) 456
HhaI GCGC 2 cut(s) 294, 380
Hin1II CATG 3 cut(s) 53, 84, 796
Hin6I GCGC 2 cut(s) 292, 378
HinP1I GCGC 2 cut(s) 292, 378
HincII GTYRAC 1 cut(s) 757
HindII GTYRAC 1 cut(s) 757
HinfI GANTC 3 cut(s) 340, 371, 386
HpaII CCGG 1 cut(s) 456
HphI GGTGA 3 cut(s) 199, 266, 497
Hpy166II GTNNAC 2 cut(s) 480, 757
Hpy188I TCNGA 2 cut(s) 385, 612
Hpy188III TCNNGA 2 cut(s) 225, 521
Hpy8I GTNNAC 2 cut(s) 480, 757
Hpy99I CGWCG 1 cut(s) 214
HpyAV CCTTC 3 cut(s) 254, 460, 583
HpyCH4III ACNGT 2 cut(s) 24, 187
HpyCH4V TGCA 8 cut(s) 168, 239, 245, 330, 367, 473, 480, 566
HpyF3I CTNAG 2 cut(s) 512, 767
Hsp92II CATG 3 cut(s) 53, 84, 796
HspAI GCGC 2 cut(s) 292, 378
Kzo9I GATC 3 cut(s) 625, 694, 736
LpnPI CCDG 7 cut(s) 237, 353, 468, 469, 643, 677, 737
Lsp1109I GCAGC 4 cut(s) 399, 402, 457, 653
LweI GCATC 2 cut(s) 603, 777
MaeI CTAG 1 cut(s) 617
MaeIII GTNAC 3 cut(s) 179, 687, 717
MalI GATC 3 cut(s) 627, 696, 738
MboI GATC 3 cut(s) 625, 694, 736
MboII GAAGA 7 cut(s) 90, 349, 415, 506, 536, 539, 581
MfeI CAATTG 1 cut(s) 274
MhlI GDGCHC 1 cut(s) 482
MluCI AATT 9 cut(s) 94, 130, 139, 175, 264, 274, 317, 621, 778
MlyI GAGTC 1 cut(s) 334
MmeI TCCRAC 1 cut(s) 537
MnlI CCTC 2 cut(s) 250, 416
MseI TTAA 1 cut(s) 89
MspI CCGG 1 cut(s) 456
MunI CAATTG 1 cut(s) 274
NdeII GATC 3 cut(s) 625, 694, 736
NlaIII CATG 3 cut(s) 53, 84, 796
NmuCI GTSAC 2 cut(s) 687, 717
NspI RCATGY 1 cut(s) 84
PciI ACATGT 1 cut(s) 80
PfeI GAWTC 2 cut(s) 371, 386
PflFI GACNNNGTC 1 cut(s) 343
PkrI GCNGC 4 cut(s) 414, 417, 472, 643
PleI GAGTC 1 cut(s) 334
PpsI GAGTC 1 cut(s) 334
PscI ACATGT 1 cut(s) 80
PsiI TTATAA 1 cut(s) 135
PstI CTGCAG 1 cut(s) 475
PsyI GACNNNGTC 1 cut(s) 343
SaqAI TTAA 1 cut(s) 89
SatI GCNGC 4 cut(s) 413, 416, 471, 642
Sau3AI GATC 3 cut(s) 625, 694, 736
SchI GAGTC 1 cut(s) 334
SduI GDGCHC 1 cut(s) 482
SetI ASST 4 cut(s) 222, 414, 427, 775
SfaNI GCATC 2 cut(s) 603, 777
SfcI CTRYAG 1 cut(s) 471
SmlI CTYRAG 1 cut(s) 653
SmoI CTYRAG 1 cut(s) 653
Sse9I AATT 9 cut(s) 94, 130, 139, 175, 264, 274, 317, 621, 778
SspI AATATT 1 cut(s) 120
SspMI CTAG 1 cut(s) 617
StyI CCWWGG 1 cut(s) 144
TaaI ACNGT 2 cut(s) 24, 187
TaqI TCGA 3 cut(s) 209, 224, 663
TasI AATT 9 cut(s) 94, 130, 139, 175, 264, 274, 317, 621, 778
TfiI GAWTC 2 cut(s) 371, 386
Tru1I TTAA 1 cut(s) 89
Tru9I TTAA 1 cut(s) 89
TscAI CASTG 3 cut(s) 256, 480, 487
TseFI GTSAC 2 cut(s) 687, 717
TseI GCWGC 4 cut(s) 412, 415, 470, 641
Tsp45I GTSAC 2 cut(s) 687, 717
TspDTI ATGAA 4 cut(s) 195, 245, 557, 602
TspRI CASTG 3 cut(s) 256, 480, 487
Tth111I GACNNNGTC 1 cut(s) 343
VneI GTGCAC 1 cut(s) 478
XapI RAATTY 2 cut(s) 139, 317
XceI RCATGY 1 cut(s) 84
XspI CTAG 1 cut(s) 617
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.