Prupe.3G092300_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0016891
Physical Location & Seq
Forward (+)
6901823 .. 6903363
1541 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G092300.1

Sequence Viewer

Length: 486 bp
ATGCCGGAGCGCCAAAGGACCAAAAAGGAAAGAGAATCGTATCAGTACAATTTGGAGGCCGGGTCAAGTGGGAAAAAACTATTGCATGATTCAAGGACTTGGGGTGCTGAAAAGGCAGTGAAGAAACCGCTGCTTCTTGGTTGTTCAACAAGTAAAGCTGTAGTGTGCAACAGTGAAGTTGAAGAACTAAATGAGCGGTTGAGGATTCTTGAAGAAGAAACTGAAACTATGAAGCAAGAGTTATTTGAGAGTGCACAAGAGAGAAAGAAGTTGATGAATGAGATATATCAGCAGTTTCAGATGCTAGAAATTGACCCCAGATATCTGGTAGCAAGAGAATTCAAGTCTACTGATGGAAATACAAGTGTCAACTCTTCACAGGATGAGAGAATGGGAACTAGTTTGTCAGATATCTTGCACCAAGATCCACATCCATCTCTTGTCACCAGAAATCTTAGAGCTAATGCTTTGGCACTGCTGATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

162

Amino Acids

18.55

Weight (kDa)

6.0

Isoelectric Point (pI)

38.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016891)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g29300
malus_domestica MD17G1216200.v1.1
prunus_persica Prupe.3G092300_v2.0.a1
pyrus_communis pycom17g22080
rosa_chinensis RchiOBHm_Chr2g0134481
rosa_laevigata RLG00000019395
rosa_multiflora Rmu_sc0005464.1_g000026
rosa_roxburghii Rroxscaffold_2G00110180
rosa_rugosa Rorug02G0317400
rosa_samantha Rh2AG375800 Rh2BG375800 Rh2CG354000 Rh2DG393100
rosa_wichuraiana Rw2G030140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 196
AccI GTMKAC 1 cut(s) 347
AciI CCGC 2 cut(s) 128, 196
AclWI GGATC 1 cut(s) 419
AcsI RAATTY 1 cut(s) 338
AfaI GTAC 1 cut(s) 47
AgsI TTSAA 5 cut(s) 93, 147, 182, 212, 343
AhlI ACTAGT 1 cut(s) 398
AluBI AGCT 2 cut(s) 158, 461
AluI AGCT 2 cut(s) 158, 461
Alw21I GWGCWC 1 cut(s) 256
Alw44I GTGCAC 1 cut(s) 252
AlwI GGATC 1 cut(s) 419
AoxI GGCC 1 cut(s) 57
ApaLI GTGCAC 1 cut(s) 252
ApeKI GCWGC 1 cut(s) 130
ApoI RAATTY 1 cut(s) 338
AspLEI GCGC 1 cut(s) 12
AspS9I GGNCC 1 cut(s) 18
AsuC2I CCSGG 1 cut(s) 61
AsuHPI GGTGA 1 cut(s) 436
AvaII GGWCC 1 cut(s) 18
BaeGI GKGCMC 1 cut(s) 256
Bbv12I GWGCWC 1 cut(s) 256
BbvI GCAGC 1 cut(s) 117
BccI CCATC 2 cut(s) 347, 442
BcnI CCSGG 1 cut(s) 61
BcuI ACTAGT 1 cut(s) 398
BfaI CTAG 2 cut(s) 305, 399
BfmI CTRYAG 1 cut(s) 159
BfoI RGCGCY 1 cut(s) 13
BisI GCNGC 1 cut(s) 131
BlsI GCNGC 1 cut(s) 132
Bme1390I CCNGG 1 cut(s) 61
Bme18I GGWCC 1 cut(s) 18
BmgT120I GGNCC 1 cut(s) 18
BmrFI CCNGG 1 cut(s) 61
BmsI GCATC 1 cut(s) 291
BpuMI CCSGG 1 cut(s) 61
BsaBI GATNNNNATC 1 cut(s) 429
BsaXI ACNNNNNCTCC 2 cut(s) 47, 77
Bse8I GATNNNNATC 1 cut(s) 429
BseGI GGATG 2 cut(s) 388, 430
BseJI GATNNNNATC 1 cut(s) 429
BseSI GKGCMC 1 cut(s) 256
BseXI GCAGC 1 cut(s) 117
BshFI GGCC 1 cut(s) 59
BsiHKAI GWGCWC 1 cut(s) 256
BsiSI CCGG 2 cut(s) 5, 60
BsnI GGCC 1 cut(s) 59
Bsp1286I GDGCHC 1 cut(s) 256
Bsp143I GATC 1 cut(s) 424
BspACI CCGC 2 cut(s) 128, 196
BspANI GGCC 1 cut(s) 59
BspPI GGATC 1 cut(s) 419
BsrBI CCGCTC 1 cut(s) 196
BssMI GATC 1 cut(s) 424
Bst4CI ACNGT 1 cut(s) 173
Bst6I CTCTTC 1 cut(s) 379
BstDEI CTNAG 1 cut(s) 455
BstF5I GGATG 2 cut(s) 388, 430
BstH2I RGCGCY 1 cut(s) 13
BstHHI GCGC 1 cut(s) 12
BstKTI GATC 1 cut(s) 427
BstMBI GATC 1 cut(s) 424
BstMWI GCNNNNNNNGC 1 cut(s) 113
BstSCI CCNGG 1 cut(s) 59
BstSFI CTRYAG 1 cut(s) 159
BstSLI GKGCMC 1 cut(s) 256
BstV1I GCAGC 1 cut(s) 117
BstX2I RGATCY 1 cut(s) 424
BstXI CCANNNNNNTGG 1 cut(s) 325
BstYI RGATCY 1 cut(s) 424
BsuRI GGCC 1 cut(s) 59
BtsCI GGATG 2 cut(s) 388, 430
BtsI GCAGTG 2 cut(s) 123, 473
BtsIMutI CAGTG 3 cut(s) 123, 178, 473
CfoI GCGC 1 cut(s) 12
Cfr13I GGNCC 1 cut(s) 18
Csp6I GTAC 1 cut(s) 46
CviAII CATG 1 cut(s) 86
CviJI RGCY 3 cut(s) 59, 158, 461
CviKI_1 RGCY 3 cut(s) 59, 158, 461
CviQI GTAC 1 cut(s) 46
DdeI CTNAG 1 cut(s) 455
DpnI GATC 1 cut(s) 426
DpnII GATC 1 cut(s) 424
Eam1104I CTCTTC 1 cut(s) 379
EarI CTCTTC 1 cut(s) 379
Eco32I GATATC 2 cut(s) 323, 412
Eco47I GGWCC 1 cut(s) 18
EcoRI GAATTC 1 cut(s) 338
EcoRV GATATC 2 cut(s) 323, 412
FaeI CATG 1 cut(s) 89
FaiI YATR 3 cut(s) 87, 230, 286
FatI CATG 1 cut(s) 85
FblI GTMKAC 1 cut(s) 347
Fnu4HI GCNGC 1 cut(s) 131
FokI GGATG 2 cut(s) 395, 417
Fsp4HI GCNGC 1 cut(s) 131
FspBI CTAG 2 cut(s) 305, 399
GlaI GCGC 1 cut(s) 11
GluI GCNGC 1 cut(s) 131
HaeII RGCGCY 1 cut(s) 13
HaeIII GGCC 1 cut(s) 59
HapII CCGG 2 cut(s) 5, 60
HhaI GCGC 1 cut(s) 12
Hin1II CATG 1 cut(s) 89
Hin6I GCGC 1 cut(s) 10
HinP1I GCGC 1 cut(s) 10
HincII GTYRAC 1 cut(s) 370
HindII GTYRAC 1 cut(s) 370
HinfI GANTC 3 cut(s) 35, 89, 205
HpaII CCGG 2 cut(s) 5, 60
HphI GGTGA 1 cut(s) 436
Hpy166II GTNNAC 3 cut(s) 254, 348, 370
Hpy188I TCNGA 2 cut(s) 300, 409
Hpy188III TCNNGA 1 cut(s) 209
Hpy8I GTNNAC 3 cut(s) 254, 348, 370
HpyCH4III ACNGT 1 cut(s) 173
HpyCH4V TGCA 4 cut(s) 85, 168, 254, 418
HpyF10VI GCNNNNNNNGC 1 cut(s) 113
HpyF3I CTNAG 1 cut(s) 455
Hsp92II CATG 1 cut(s) 89
HspAI GCGC 1 cut(s) 10
Kzo9I GATC 1 cut(s) 424
LmnI GCTCC 1 cut(s) 7
LpnPI CCDG 6 cut(s) 18, 73, 311, 331, 365, 460
Lsp1109I GCAGC 1 cut(s) 117
LweI GCATC 1 cut(s) 291
MaeI CTAG 2 cut(s) 305, 399
MaeIII GTNAC 1 cut(s) 442
MalI GATC 1 cut(s) 426
MbiI CCGCTC 1 cut(s) 196
MboI GATC 1 cut(s) 424
MboII GAAGA 5 cut(s) 133, 194, 224, 227, 366
MflI RGATCY 1 cut(s) 424
MhlI GDGCHC 1 cut(s) 256
MluCI AATT 3 cut(s) 49, 309, 338
MnlI CCTC 2 cut(s) 49, 195
MspA1I CMGCKG 1 cut(s) 130
MspI CCGG 2 cut(s) 5, 60
MspR9I CCNGG 1 cut(s) 61
MwoI GCNNNNNNNGC 1 cut(s) 113
NciI CCSGG 1 cut(s) 61
NdeII GATC 1 cut(s) 424
NlaIII CATG 1 cut(s) 89
NmuCI GTSAC 1 cut(s) 442
PfeI GAWTC 3 cut(s) 35, 89, 205
PkrI GCNGC 1 cut(s) 132
PspPI GGNCC 1 cut(s) 18
PsuI RGATCY 1 cut(s) 424
RsaI GTAC 1 cut(s) 47
RsaNI GTAC 1 cut(s) 46
SatI GCNGC 1 cut(s) 131
Sau3AI GATC 1 cut(s) 424
Sau96I GGNCC 1 cut(s) 18
ScrFI CCNGG 1 cut(s) 61
SduI GDGCHC 1 cut(s) 256
SetI ASST 2 cut(s) 160, 463
SfaNI GCATC 1 cut(s) 291
SfcI CTRYAG 1 cut(s) 159
SinI GGWCC 1 cut(s) 18
SpeI ACTAGT 1 cut(s) 398
Sse9I AATT 3 cut(s) 49, 309, 338
SsiI CCGC 2 cut(s) 128, 196
SspMI CTAG 2 cut(s) 305, 399
StyD4I CCNGG 1 cut(s) 59
TaaI ACNGT 1 cut(s) 173
TasI AATT 3 cut(s) 49, 309, 338
TatI WGTACW 1 cut(s) 45
TfiI GAWTC 3 cut(s) 35, 89, 205
TscAI CASTG 3 cut(s) 123, 178, 480
TseFI GTSAC 1 cut(s) 442
TseI GCWGC 1 cut(s) 130
Tsp45I GTSAC 1 cut(s) 442
TspDTI ATGAA 2 cut(s) 245, 290
TspRI CASTG 3 cut(s) 123, 178, 480
VneI GTGCAC 1 cut(s) 252
VpaK11BI GGWCC 1 cut(s) 18
XapI RAATTY 1 cut(s) 338
XmiI GTMKAC 1 cut(s) 347
XspI CTAG 2 cut(s) 305, 399
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.