Rh2DG393100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0016891
Physical Location & Seq
Reverse (-)
57107653 .. 57111726
4074 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG393100.1

Sequence Viewer

Length: 519 bp
ATGGAAGCTTTCAAGCCTGGGTTGGAAATATGTTCATCAACTACGGAGCTTTCGAGATTCGATGGTGCAAGCACTAGTGAGCAAGCAATGAATAGGATCAAAATTGAAAGAGCATCGTATCAGTGCAACTTAGAGATTGAGTCAAGGACCAAGGGTGCTGAAATGGCTGCGAACAAGTCGCTGATACTTGGTTTTTCAAGCAGTCAGGTGAACCTTTCTTGCAAGGGTAAAGCTGTACTGTGCTCCTCTAATGAAATCGAAGAACTAAATGAGAGAATGAGGATTCTTGAAGAAGAAACTGAAAGTATGAAGCAAGAATTATTTGAGGGTGCAGAAGAAAGAAGGAAGTTGATAAATGAGATATATCAGCAGTTTCAAATTTTAACAAGAGAACTCAAGTTTAATGATGGAAGTAGAAGTGAGACCTCCTCACAGGACAAGACAGCAGGATCAGATTTATCGGATGATTTACGACAAGATCTAGCTCATACTTTGTCAGTGCTGTTGTTAACACAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

172

Amino Acids

19.36

Weight (kDa)

4.81

Isoelectric Point (pI)

60.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016891)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g29300
malus_domestica MD17G1216200.v1.1
prunus_persica Prupe.3G092300_v2.0.a1
pyrus_communis pycom17g22080
rosa_chinensis RchiOBHm_Chr2g0134481
rosa_laevigata RLG00000019395
rosa_multiflora Rmu_sc0005464.1_g000026
rosa_roxburghii Rroxscaffold_2G00110180
rosa_rugosa Rorug02G0317400
rosa_samantha Rh2AG375800 Rh2BG375800 Rh2CG354000 Rh2DG393100
rosa_wichuraiana Rw2G030140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 104, 457
AcsI RAATTY 1 cut(s) 378
AfaI GTAC 1 cut(s) 237
AgsI TTSAA 5 cut(s) 13, 107, 198, 290, 377
AhlI ACTAGT 1 cut(s) 74
AjnI CCWGG 1 cut(s) 16
AluBI AGCT 4 cut(s) 8, 49, 233, 485
AluI AGCT 4 cut(s) 8, 49, 233, 485
Alw21I GWGCWC 1 cut(s) 245
Alw26I GTCTC 1 cut(s) 416
AlwI GGATC 2 cut(s) 104, 457
ApeKI GCWGC 1 cut(s) 167
ApoI RAATTY 1 cut(s) 378
AspS9I GGNCC 1 cut(s) 147
AsuHPI GGTGA 1 cut(s) 220
AvaII GGWCC 1 cut(s) 147
Bbv12I GWGCWC 1 cut(s) 245
BbvI GCAGC 1 cut(s) 154
BccI CCATC 2 cut(s) 56, 401
BciT130I CCWGG 1 cut(s) 18
BcoDI GTCTC 1 cut(s) 416
BcuI ACTAGT 1 cut(s) 74
BfaI CTAG 2 cut(s) 75, 482
BglII AGATCT 1 cut(s) 478
BisI GCNGC 1 cut(s) 168
BlsI GCNGC 1 cut(s) 169
Bme1390I CCNGG 1 cut(s) 18
Bme18I GGWCC 1 cut(s) 147
BmgT120I GGNCC 1 cut(s) 147
BmrFI CCNGG 1 cut(s) 18
BmsI GCATC 1 cut(s) 122
BplI GAGNNNNNCTC 2 cut(s) 413, 445
BpuEI CTTGAG 1 cut(s) 380
BsaI GGTCTC 1 cut(s) 416
BsaJI CCNNGG 2 cut(s) 17, 150
Bse3DI GCAATG 1 cut(s) 93
BseBI CCWGG 1 cut(s) 18
BseDI CCNNGG 2 cut(s) 17, 150
BseGI GGATG 1 cut(s) 469
BseMI GCAATG 1 cut(s) 93
BseRI GAGGAG 2 cut(s) 235, 418
BseXI GCAGC 1 cut(s) 154
BsgI GTGCAG 1 cut(s) 351
BsiHKAI GWGCWC 1 cut(s) 245
BsmAI GTCTC 1 cut(s) 416
Bso31I GGTCTC 1 cut(s) 416
Bsp1286I GDGCHC 1 cut(s) 245
Bsp143I GATC 3 cut(s) 96, 449, 478
BspPI GGATC 2 cut(s) 104, 457
BspTNI GGTCTC 1 cut(s) 416
BsrDI GCAATG 1 cut(s) 93
BssECI CCNNGG 2 cut(s) 17, 150
BssMI GATC 3 cut(s) 96, 449, 478
BssT1I CCWWGG 1 cut(s) 150
Bst2UI CCWGG 1 cut(s) 18
Bst4CI ACNGT 1 cut(s) 240
BstC8I GCNNGC 2 cut(s) 70, 84
BstDEI CTNAG 1 cut(s) 130
BstF5I GGATG 1 cut(s) 469
BstKTI GATC 3 cut(s) 99, 452, 481
BstMAI GTCTC 1 cut(s) 416
BstMBI GATC 3 cut(s) 96, 449, 478
BstMWI GCNNNNNNNGC 1 cut(s) 164
BstNI CCWGG 1 cut(s) 18
BstSCI CCNGG 1 cut(s) 16
BstV1I GCAGC 1 cut(s) 154
BstX2I RGATCY 1 cut(s) 478
BstYI RGATCY 1 cut(s) 478
BtsCI GGATG 1 cut(s) 469
BtsIMutI CAGTG 2 cut(s) 128, 504
Cac8I GCNNGC 2 cut(s) 70, 84
Cfr13I GGNCC 1 cut(s) 147
Csp6I GTAC 1 cut(s) 236
CviJI RGCY 6 cut(s) 8, 16, 49, 167, 233, 485
CviKI_1 RGCY 6 cut(s) 8, 16, 49, 167, 233, 485
CviQI GTAC 1 cut(s) 236
DdeI CTNAG 1 cut(s) 130
DpnI GATC 3 cut(s) 98, 451, 480
DpnII GATC 3 cut(s) 96, 449, 478
Eco130I CCWWGG 1 cut(s) 150
Eco31I GGTCTC 1 cut(s) 416
Eco47I GGWCC 1 cut(s) 147
EcoRII CCWGG 1 cut(s) 16
EcoT14I CCWWGG 1 cut(s) 150
ErhI CCWWGG 1 cut(s) 150
FaiI YATR 4 cut(s) 31, 308, 364, 489
Fnu4HI GCNGC 1 cut(s) 168
FokI GGATG 1 cut(s) 476
Fsp4HI GCNGC 1 cut(s) 168
FspBI CTAG 2 cut(s) 75, 482
GluI GCNGC 1 cut(s) 168
HincII GTYRAC 1 cut(s) 510
HindII GTYRAC 1 cut(s) 510
HindIII AAGCTT 1 cut(s) 6
HinfI GANTC 3 cut(s) 57, 140, 283
HpaI GTTAAC 1 cut(s) 510
HphI GGTGA 1 cut(s) 220
Hpy166II GTNNAC 2 cut(s) 211, 510
Hpy188I TCNGA 2 cut(s) 454, 463
Hpy188III TCNNGA 2 cut(s) 54, 287
Hpy8I GTNNAC 2 cut(s) 211, 510
HpyAV CCTTC 1 cut(s) 336
HpyCH4III ACNGT 1 cut(s) 240
HpyCH4V TGCA 4 cut(s) 68, 126, 222, 332
HpyF10VI GCNNNNNNNGC 1 cut(s) 164
HpyF3I CTNAG 1 cut(s) 130
KspAI GTTAAC 1 cut(s) 510
Kzo9I GATC 3 cut(s) 96, 449, 478
LmnI GCTCC 2 cut(s) 46, 248
LpnPI CCDG 5 cut(s) 3, 30, 191, 419, 432
Lsp1109I GCAGC 1 cut(s) 154
LweI GCATC 1 cut(s) 122
MaeI CTAG 2 cut(s) 75, 482
MalI GATC 3 cut(s) 98, 451, 480
MboI GATC 3 cut(s) 96, 449, 478
MboII GAAGA 4 cut(s) 272, 302, 305, 347
MflI RGATCY 1 cut(s) 478
MhlI GDGCHC 1 cut(s) 245
MluCI AATT 3 cut(s) 102, 317, 378
MlyI GAGTC 1 cut(s) 149
MnlI CCTC 5 cut(s) 256, 273, 319, 436, 439
MseI TTAA 3 cut(s) 383, 402, 509
MspR9I CCNGG 1 cut(s) 18
MvaI CCWGG 1 cut(s) 18
MwoI GCNNNNNNNGC 1 cut(s) 164
NdeII GATC 3 cut(s) 96, 449, 478
PcsI WCGNNNNNNNCGW 1 cut(s) 50
PfeI GAWTC 2 cut(s) 57, 283
PkrI GCNGC 1 cut(s) 169
PleI GAGTC 1 cut(s) 148
PpsI GAGTC 1 cut(s) 148
Psp6I CCWGG 1 cut(s) 16
PspGI CCWGG 1 cut(s) 16
PspPI GGNCC 1 cut(s) 147
PsuI RGATCY 1 cut(s) 478
RsaI GTAC 1 cut(s) 237
RsaNI GTAC 1 cut(s) 236
SaqAI TTAA 3 cut(s) 383, 402, 509
SatI GCNGC 1 cut(s) 168
Sau3AI GATC 3 cut(s) 96, 449, 478
Sau96I GGNCC 1 cut(s) 147
SchI GAGTC 1 cut(s) 149
ScrFI CCNGG 1 cut(s) 18
SduI GDGCHC 1 cut(s) 245
SetI ASST 7 cut(s) 10, 51, 210, 216, 235, 428, 487
SfaNI GCATC 1 cut(s) 122
SinI GGWCC 1 cut(s) 147
SmlI CTYRAG 1 cut(s) 395
SmoI CTYRAG 1 cut(s) 395
SpeI ACTAGT 1 cut(s) 74
Sse9I AATT 3 cut(s) 102, 317, 378
SspMI CTAG 2 cut(s) 75, 482
StyD4I CCNGG 1 cut(s) 16
StyI CCWWGG 1 cut(s) 150
TaaI ACNGT 1 cut(s) 240
TaqI TCGA 3 cut(s) 53, 60, 258
TasI AATT 3 cut(s) 102, 317, 378
TatI WGTACW 1 cut(s) 235
TfiI GAWTC 2 cut(s) 57, 283
Tru1I TTAA 3 cut(s) 383, 402, 509
Tru9I TTAA 3 cut(s) 383, 402, 509
TscAI CASTG 2 cut(s) 128, 504
TseI GCWGC 1 cut(s) 167
TspDTI ATGAA 4 cut(s) 24, 104, 267, 323
TspGWI ACGGA 1 cut(s) 59
TspRI CASTG 2 cut(s) 128, 504
VpaK11BI GGWCC 1 cut(s) 147
XapI RAATTY 1 cut(s) 378
XspI CTAG 2 cut(s) 75, 482
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.