Rorug02G0317400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0016891
Physical Location & Seq
Reverse (-)
38715083 .. 38716982
1900 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0317400.1

Sequence Viewer

Length: 597 bp
ATGAAGGGTCGCCTGAAAGAGATGAGTGAGTGGTGCAGGCAGCTGATGCGTGAAGAAGATTTGGAACAAGATGAAGAACTTGAAATTGGAGTTACTCAAGATATTCCTGACATTGATGCCACTCAAGATATTTCCAATGGCTCAAGAGTGTCCATCCTTGATCTTAACAAGAGTACCAACCCAGTAACTGCCTCATTTCAGGAAATGATGATTGACAATATTGTTGTCCCTGTGGCTTCCAGTTTTGGCCTTGGAGAGGATTATAATTACTTAAGGAGATCAATCAGAGAATTTTTGACAGGGGAGGAGTTGGAGAAGCTCGCTTTAGATGTAGCGTTCTTATCTTCCAGATCAGGTCGCATATTTGTGATAGACACAAAAACAGATCCAAAAGCTCCCTTTCTGCATAAAGTTGTTGACCCTGAAGACATCGTACAGAAGACTGGATTGGCATACCCACACACATCTCACTGCCTTGCATCTGGTGATTTCTTCTCCGTGACTCAGAGTTTAATGTCAAGGGAAGATGGGACAAACCAGGGCACACTTCACTTTTTGGTTATGATTTCTGGTACCAACGGCGGCACAAGACAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

198

Amino Acids

22.12

Weight (kDa)

4.67

Isoelectric Point (pI)

43.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SBP56 PF05694 115 - 185 1.5e-16 56kDa selenium binding protein (SBP56)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016891)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g29300
malus_domestica MD17G1216200.v1.1
prunus_persica Prupe.3G092300_v2.0.a1
pyrus_communis pycom17g22080
rosa_chinensis RchiOBHm_Chr2g0134481
rosa_laevigata RLG00000019395
rosa_multiflora Rmu_sc0005464.1_g000026
rosa_roxburghii Rroxscaffold_2G00110180
rosa_rugosa Rorug02G0317400
rosa_samantha Rh2AG375800 Rh2BG375800 Rh2CG354000 Rh2DG393100
rosa_wichuraiana Rw2G030140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 264
Acc65I GGTACC 1 cut(s) 572
AccB1I GGYRCC 1 cut(s) 572
AciI CCGC 1 cut(s) 582
AclWI GGATC 1 cut(s) 380
AcsI RAATTY 1 cut(s) 290
AcuI CTGAAG 1 cut(s) 444
AfaI GTAC 3 cut(s) 175, 435, 574
AfiI CCNNNNNNNGG 1 cut(s) 256
AflII CTTAAG 1 cut(s) 271
AgsI TTSAA 1 cut(s) 83
AjnI CCWGG 1 cut(s) 537
AjuI GAANNNNNNNTTGG 4 cut(s) 69, 101, 431, 463
AluBI AGCT 3 cut(s) 43, 319, 395
AluI AGCT 3 cut(s) 43, 319, 395
AlwI GGATC 1 cut(s) 380
AlwNI CAGNNNCTG 1 cut(s) 188
AoxI GGCC 1 cut(s) 247
ApeKI GCWGC 1 cut(s) 40
ApoI RAATTY 1 cut(s) 290
Asp718I GGTACC 1 cut(s) 572
AsuHPI GGTGA 1 cut(s) 497
BaeGI GKGCMC 1 cut(s) 545
BaeI ACNNNNGTAYC 2 cut(s) 157, 190
BanI GGYRCC 1 cut(s) 572
BarI GAAGNNNNNNTAC 2 cut(s) 417, 449
BbsI GAAGAC 2 cut(s) 432, 446
BbvI GCAGC 1 cut(s) 52
BccI CCATC 2 cut(s) 161, 521
BceAI ACGGC 1 cut(s) 595
BciT130I CCWGG 1 cut(s) 539
BfrI CTTAAG 1 cut(s) 271
BisI GCNGC 2 cut(s) 41, 583
BlsI GCNGC 2 cut(s) 42, 584
Bme1390I CCNGG 1 cut(s) 539
BmiI GGNNCC 1 cut(s) 574
BmrFI CCNGG 1 cut(s) 539
BmrI ACTGGG 1 cut(s) 176
BmsI GCATC 3 cut(s) 36, 106, 488
BmuI ACTGGG 1 cut(s) 176
BpiI GAAGAC 2 cut(s) 432, 446
BpuEI CTTGAG 3 cut(s) 81, 108, 127
BsaJI CCNNGG 2 cut(s) 250, 538
Bsc4I CCNNNNNNNGG 1 cut(s) 256
Bse1I ACTGG 3 cut(s) 182, 240, 448
BseBI CCWGG 1 cut(s) 539
BseDI CCNNGG 2 cut(s) 250, 538
BseGI GGATG 1 cut(s) 153
BseLI CCNNNNNNNGG 1 cut(s) 256
BseMII CTCAG 1 cut(s) 518
BseNI ACTGG 3 cut(s) 182, 240, 448
BseRI GAGGAG 1 cut(s) 320
BseSI GKGCMC 1 cut(s) 545
BseXI GCAGC 1 cut(s) 52
BsgI GTGCAG 1 cut(s) 55
BshFI GGCC 1 cut(s) 249
BshNI GGYRCC 1 cut(s) 572
BslFI GGGAC 2 cut(s) 212, 544
BslI CCNNNNNNNGG 1 cut(s) 256
BsmFI GGGAC 2 cut(s) 212, 544
BsnI GGCC 1 cut(s) 249
Bsp1286I GDGCHC 1 cut(s) 545
Bsp143I GATC 4 cut(s) 160, 278, 350, 385
BspACI CCGC 1 cut(s) 582
BspANI GGCC 1 cut(s) 249
BspCNI CTCAG 1 cut(s) 517
BspLI GGNNCC 1 cut(s) 574
BspPI GGATC 1 cut(s) 380
BspT107I GGYRCC 1 cut(s) 572
BspTI CTTAAG 1 cut(s) 271
BsrI ACTGG 3 cut(s) 182, 240, 448
BssECI CCNNGG 2 cut(s) 250, 538
BssMI GATC 4 cut(s) 160, 278, 350, 385
BssT1I CCWWGG 1 cut(s) 250
Bst2UI CCWGG 1 cut(s) 539
BstAFI CTTAAG 1 cut(s) 271
BstAPI GCANNNNNTGC 1 cut(s) 46
BstC8I GCNNGC 2 cut(s) 38, 321
BstDEI CTNAG 1 cut(s) 504
BstENI CCTNNNNNAGG 1 cut(s) 254
BstF5I GGATG 1 cut(s) 153
BstKTI GATC 4 cut(s) 163, 281, 353, 388
BstMBI GATC 4 cut(s) 160, 278, 350, 385
BstMWI GCNNNNNNNGC 1 cut(s) 46
BstNI CCWGG 1 cut(s) 539
BstSCI CCNGG 1 cut(s) 537
BstSLI GKGCMC 1 cut(s) 545
BstV1I GCAGC 1 cut(s) 52
BstV2I GAAGAC 2 cut(s) 432, 446
BstX2I RGATCY 1 cut(s) 385
BstYI RGATCY 1 cut(s) 385
BsuRI GGCC 1 cut(s) 249
BtsCI GGATG 1 cut(s) 153
BtsI GCAGTG 1 cut(s) 469
BtsIMutI CAGTG 1 cut(s) 469
Cac8I GCNNGC 2 cut(s) 38, 321
CaiI CAGNNNCTG 1 cut(s) 188
Csp6I GTAC 3 cut(s) 174, 434, 573
CviJI RGCY 6 cut(s) 43, 141, 236, 249, 319, 395
CviKI_1 RGCY 6 cut(s) 43, 141, 236, 249, 319, 395
CviQI GTAC 3 cut(s) 174, 434, 573
DdeI CTNAG 1 cut(s) 504
DpnI GATC 4 cut(s) 162, 280, 352, 387
DpnII GATC 4 cut(s) 160, 278, 350, 385
Eco130I CCWWGG 1 cut(s) 250
Eco57I CTGAAG 1 cut(s) 444
EcoNI CCTNNNNNAGG 1 cut(s) 254
EcoRII CCWGG 1 cut(s) 537
EcoT14I CCWWGG 1 cut(s) 250
ErhI CCWWGG 1 cut(s) 250
FaiI YATR 5 cut(s) 264, 362, 408, 454, 563
FaqI GGGAC 2 cut(s) 212, 544
Fnu4HI GCNGC 2 cut(s) 41, 583
FokI GGATG 1 cut(s) 140
Fsp4HI GCNGC 2 cut(s) 41, 583
GluI GCNGC 2 cut(s) 41, 583
HaeIII GGCC 1 cut(s) 249
HincII GTYRAC 1 cut(s) 418
HindII GTYRAC 1 cut(s) 418
HinfI GANTC 1 cut(s) 502
HphI GGTGA 1 cut(s) 497
Hpy166II GTNNAC 1 cut(s) 418
Hpy188I TCNGA 2 cut(s) 287, 507
Hpy188III TCNNGA 6 cut(s) 98, 107, 125, 144, 200, 348
Hpy8I GTNNAC 1 cut(s) 418
HpyCH4V TGCA 3 cut(s) 36, 406, 479
HpyF10VI GCNNNNNNNGC 1 cut(s) 46
HpyF3I CTNAG 1 cut(s) 504
KpnI GGTACC 1 cut(s) 576
Kzo9I GATC 4 cut(s) 160, 278, 350, 385
LmnI GCTCC 1 cut(s) 400
Lsp1109I GCAGC 1 cut(s) 52
LweI GCATC 3 cut(s) 36, 106, 488
MaeIII GTNAC 3 cut(s) 91, 184, 499
MalI GATC 4 cut(s) 162, 280, 352, 387
MboI GATC 4 cut(s) 160, 278, 350, 385
MboII GAAGA 8 cut(s) 65, 68, 86, 336, 437, 451, 484, 536
MflI RGATCY 1 cut(s) 385
MhlI GDGCHC 1 cut(s) 545
MluCI AATT 3 cut(s) 84, 265, 290
MlyI GAGTC 1 cut(s) 496
MmeI TCCRAC 1 cut(s) 291
MnlI CCTC 3 cut(s) 202, 250, 298
MseI TTAA 3 cut(s) 165, 272, 512
MslI CAYNNNNRTG 1 cut(s) 365
MspA1I CMGCKG 1 cut(s) 43
MspCI CTTAAG 1 cut(s) 271
MspR9I CCNGG 1 cut(s) 539
MvaI CCWGG 1 cut(s) 539
MwoI GCNNNNNNNGC 1 cut(s) 46
NdeII GATC 4 cut(s) 160, 278, 350, 385
NlaIV GGNNCC 1 cut(s) 574
NmuCI GTSAC 1 cut(s) 499
PkrI GCNGC 2 cut(s) 42, 584
PleI GAGTC 1 cut(s) 496
PpsI GAGTC 1 cut(s) 496
PsiI TTATAA 1 cut(s) 264
Psp6I CCWGG 1 cut(s) 537
PspGI CCWGG 1 cut(s) 537
PspN4I GGNNCC 1 cut(s) 574
PstNI CAGNNNCTG 1 cut(s) 188
PsuI RGATCY 1 cut(s) 385
PvuII CAGCTG 1 cut(s) 43
RsaI GTAC 3 cut(s) 175, 435, 574
RsaNI GTAC 3 cut(s) 174, 434, 573
RseI CAYNNNNRTG 1 cut(s) 365
SaqAI TTAA 3 cut(s) 165, 272, 512
SatI GCNGC 2 cut(s) 41, 583
Sau3AI GATC 4 cut(s) 160, 278, 350, 385
SchI GAGTC 1 cut(s) 496
ScrFI CCNGG 1 cut(s) 539
SduI GDGCHC 1 cut(s) 545
SetI ASST 4 cut(s) 45, 321, 358, 397
SfaNI GCATC 3 cut(s) 36, 106, 488
SmiMI CAYNNNNRTG 1 cut(s) 365
SmlI CTYRAG 4 cut(s) 96, 123, 142, 271
SmoI CTYRAG 4 cut(s) 96, 123, 142, 271
Sse9I AATT 3 cut(s) 84, 265, 290
SsiI CCGC 1 cut(s) 582
SspI AATATT 1 cut(s) 220
StyD4I CCNGG 1 cut(s) 537
StyI CCWWGG 1 cut(s) 250
TasI AATT 3 cut(s) 84, 265, 290
TauI GCSGC 1 cut(s) 585
Tru1I TTAA 3 cut(s) 165, 272, 512
Tru9I TTAA 3 cut(s) 165, 272, 512
TscAI CASTG 1 cut(s) 476
TseFI GTSAC 1 cut(s) 499
TseI GCWGC 1 cut(s) 40
Tsp45I GTSAC 1 cut(s) 499
TspDTI ATGAA 2 cut(s) 17, 87
TspGWI ACGGA 1 cut(s) 487
TspRI CASTG 1 cut(s) 476
Vha464I CTTAAG 1 cut(s) 271
XagI CCTNNNNNAGG 1 cut(s) 254
XapI RAATTY 1 cut(s) 290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.