Rh2CG354000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0016891
Physical Location & Seq
Reverse (-)
47960335 .. 47960796
462 bp
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UTR
Exon/CDS
Intron
Rh2CG354000.1

Sequence Viewer

Length: 462 bp
ATGGAAGCTTTCAAGCCTGGGTTGGAAATATGTTCATCAACTAAGGAGCTTTCGAGATTCGATGGTGCAAGCACTAGTGAGCAAGCAATGAATAGGATCAAAATTGAAAGAGAATCCTATCAGTGCAACTTAGAGATTGAGTCAAGGACCAAGGGTGCTGAAATGGCTGCGAACAAGTCGCTGATACTTGGTTTTTCAAGCAGTCAGGTGAACCTTTCTTGCAAGGGTAAAGCTGTACTGTGCTCCTCTAATGAAATCGAAGAACTAAATGAGAGAATGAGGATTCTTGAAGAAGAAACTGAAAGTATGAAGCAAGAATTATTTGAGGGTGCAGAAGAAAGAAGGAAGTTGATAAATGAGATATATCAGCAGTTTCAAATTTTAACAAGAGAACTCAAGTTTAATGATGGAATTAGAAGTGAGACCTCCTCACAGGTAAATTCTGTGGTCACTTTGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

153

Amino Acids

17.43

Weight (kDa)

5.05

Isoelectric Point (pI)

62.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016891)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g29300
malus_domestica MD17G1216200.v1.1
prunus_persica Prupe.3G092300_v2.0.a1
pyrus_communis pycom17g22080
rosa_chinensis RchiOBHm_Chr2g0134481
rosa_laevigata RLG00000019395
rosa_multiflora Rmu_sc0005464.1_g000026
rosa_roxburghii Rroxscaffold_2G00110180
rosa_rugosa Rorug02G0317400
rosa_samantha Rh2AG375800 Rh2BG375800 Rh2CG354000 Rh2DG393100
rosa_wichuraiana Rw2G030140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 104
AcsI RAATTY 2 cut(s) 378, 439
AfaI GTAC 1 cut(s) 237
AgsI TTSAA 5 cut(s) 13, 107, 198, 290, 377
AhlI ACTAGT 1 cut(s) 74
AjnI CCWGG 1 cut(s) 16
AluBI AGCT 3 cut(s) 8, 49, 233
AluI AGCT 3 cut(s) 8, 49, 233
Alw21I GWGCWC 1 cut(s) 245
Alw26I GTCTC 1 cut(s) 416
AlwI GGATC 1 cut(s) 104
ApeKI GCWGC 1 cut(s) 167
ApoI RAATTY 2 cut(s) 378, 439
AspS9I GGNCC 1 cut(s) 147
AsuHPI GGTGA 1 cut(s) 220
AvaII GGWCC 1 cut(s) 147
Bbv12I GWGCWC 1 cut(s) 245
BbvI GCAGC 1 cut(s) 154
BccI CCATC 2 cut(s) 56, 401
BciT130I CCWGG 1 cut(s) 18
BcoDI GTCTC 1 cut(s) 416
BcuI ACTAGT 1 cut(s) 74
BfaI CTAG 1 cut(s) 75
BisI GCNGC 1 cut(s) 168
BlsI GCNGC 1 cut(s) 169
Bme1390I CCNGG 1 cut(s) 18
Bme18I GGWCC 1 cut(s) 147
BmgT120I GGNCC 1 cut(s) 147
BmrFI CCNGG 1 cut(s) 18
BplI GAGNNNNNCTC 2 cut(s) 413, 445
BpuEI CTTGAG 1 cut(s) 380
BsaI GGTCTC 1 cut(s) 416
BsaJI CCNNGG 2 cut(s) 17, 150
Bse3DI GCAATG 1 cut(s) 93
BseBI CCWGG 1 cut(s) 18
BseDI CCNNGG 2 cut(s) 17, 150
BseMI GCAATG 1 cut(s) 93
BseRI GAGGAG 2 cut(s) 235, 418
BseXI GCAGC 1 cut(s) 154
BsgI GTGCAG 1 cut(s) 351
BsiHKAI GWGCWC 1 cut(s) 245
BsmAI GTCTC 1 cut(s) 416
Bso31I GGTCTC 1 cut(s) 416
Bsp1286I GDGCHC 1 cut(s) 245
Bsp143I GATC 1 cut(s) 96
BspPI GGATC 1 cut(s) 104
BspTNI GGTCTC 1 cut(s) 416
BsrDI GCAATG 1 cut(s) 93
BssECI CCNNGG 2 cut(s) 17, 150
BssMI GATC 1 cut(s) 96
BssT1I CCWWGG 1 cut(s) 150
Bst2UI CCWGG 1 cut(s) 18
Bst4CI ACNGT 1 cut(s) 240
BstC8I GCNNGC 2 cut(s) 70, 84
BstDEI CTNAG 2 cut(s) 42, 130
BstKTI GATC 1 cut(s) 99
BstMAI GTCTC 1 cut(s) 416
BstMBI GATC 1 cut(s) 96
BstMWI GCNNNNNNNGC 1 cut(s) 164
BstNI CCWGG 1 cut(s) 18
BstSCI CCNGG 1 cut(s) 16
BstV1I GCAGC 1 cut(s) 154
BtsIMutI CAGTG 1 cut(s) 128
Cac8I GCNNGC 2 cut(s) 70, 84
Cfr13I GGNCC 1 cut(s) 147
Csp6I GTAC 1 cut(s) 236
CviJI RGCY 5 cut(s) 8, 16, 49, 167, 233
CviKI_1 RGCY 5 cut(s) 8, 16, 49, 167, 233
CviQI GTAC 1 cut(s) 236
DdeI CTNAG 2 cut(s) 42, 130
DpnI GATC 1 cut(s) 98
DpnII GATC 1 cut(s) 96
Eco130I CCWWGG 1 cut(s) 150
Eco31I GGTCTC 1 cut(s) 416
Eco47I GGWCC 1 cut(s) 147
EcoRII CCWGG 1 cut(s) 16
EcoT14I CCWWGG 1 cut(s) 150
ErhI CCWWGG 1 cut(s) 150
FaiI YATR 3 cut(s) 31, 308, 364
Fnu4HI GCNGC 1 cut(s) 168
Fsp4HI GCNGC 1 cut(s) 168
FspBI CTAG 1 cut(s) 75
GluI GCNGC 1 cut(s) 168
HindIII AAGCTT 1 cut(s) 6
HinfI GANTC 4 cut(s) 57, 113, 140, 283
HphI GGTGA 1 cut(s) 220
Hpy166II GTNNAC 1 cut(s) 211
Hpy188III TCNNGA 2 cut(s) 54, 287
Hpy8I GTNNAC 1 cut(s) 211
HpyAV CCTTC 1 cut(s) 336
HpyCH4III ACNGT 1 cut(s) 240
HpyCH4V TGCA 4 cut(s) 68, 126, 222, 332
HpyF10VI GCNNNNNNNGC 1 cut(s) 164
HpyF3I CTNAG 2 cut(s) 42, 130
Kzo9I GATC 1 cut(s) 96
LmnI GCTCC 2 cut(s) 46, 248
LpnPI CCDG 4 cut(s) 3, 30, 191, 419
Lsp1109I GCAGC 1 cut(s) 154
MaeI CTAG 1 cut(s) 75
MaeIII GTNAC 1 cut(s) 448
MalI GATC 1 cut(s) 98
MboI GATC 1 cut(s) 96
MboII GAAGA 4 cut(s) 272, 302, 305, 347
MhlI GDGCHC 1 cut(s) 245
MluCI AATT 5 cut(s) 102, 317, 378, 411, 439
MlyI GAGTC 1 cut(s) 149
MnlI CCTC 6 cut(s) 256, 273, 319, 436, 439, 450
MseI TTAA 2 cut(s) 383, 402
MspR9I CCNGG 1 cut(s) 18
MvaI CCWGG 1 cut(s) 18
MwoI GCNNNNNNNGC 1 cut(s) 164
NdeII GATC 1 cut(s) 96
NmuCI GTSAC 1 cut(s) 448
PfeI GAWTC 3 cut(s) 57, 113, 283
PkrI GCNGC 1 cut(s) 169
PleI GAGTC 1 cut(s) 148
PpsI GAGTC 1 cut(s) 148
Psp6I CCWGG 1 cut(s) 16
PspGI CCWGG 1 cut(s) 16
PspPI GGNCC 1 cut(s) 147
RsaI GTAC 1 cut(s) 237
RsaNI GTAC 1 cut(s) 236
SaqAI TTAA 2 cut(s) 383, 402
SatI GCNGC 1 cut(s) 168
Sau3AI GATC 1 cut(s) 96
Sau96I GGNCC 1 cut(s) 147
SchI GAGTC 1 cut(s) 149
ScrFI CCNGG 1 cut(s) 18
SduI GDGCHC 1 cut(s) 245
SetI ASST 8 cut(s) 10, 51, 210, 216, 235, 428, 438, 461
SinI GGWCC 1 cut(s) 147
SmlI CTYRAG 1 cut(s) 395
SmoI CTYRAG 1 cut(s) 395
SpeI ACTAGT 1 cut(s) 74
Sse9I AATT 5 cut(s) 102, 317, 378, 411, 439
SspMI CTAG 1 cut(s) 75
StyD4I CCNGG 1 cut(s) 16
StyI CCWWGG 1 cut(s) 150
TaaI ACNGT 1 cut(s) 240
TaqI TCGA 3 cut(s) 53, 60, 258
TasI AATT 5 cut(s) 102, 317, 378, 411, 439
TatI WGTACW 1 cut(s) 235
TfiI GAWTC 3 cut(s) 57, 113, 283
Tru1I TTAA 2 cut(s) 383, 402
Tru9I TTAA 2 cut(s) 383, 402
TscAI CASTG 1 cut(s) 128
TseFI GTSAC 1 cut(s) 448
TseI GCWGC 1 cut(s) 167
Tsp45I GTSAC 1 cut(s) 448
TspDTI ATGAA 4 cut(s) 24, 104, 267, 323
TspRI CASTG 1 cut(s) 128
VpaK11BI GGWCC 1 cut(s) 147
XapI RAATTY 2 cut(s) 378, 439
XspI CTAG 1 cut(s) 75
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.