MD17G1264400.v1.1

Lysin motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0018509
Physical Location & Seq
Forward (+)
32503777 .. 32505656
1880 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1264400.v1.1.491

Sequence Viewer

Length: 447 bp
ATGTCCGACCGAAGCTCCGCCGCTGGCGACGGCGATCCTAAGGACGACTCCATCGCCAAGACTGCCGGCTTAGTGGTGTTCTCCGGCATCGCTATGAGCATTCTCAAAGCTCTAAACCCTTTTAACAAAAGCGGAAATGAAGAAACTCCTCCACTCTCCGAGTCAACTCAGCCCATTCAGCCTCCATCGCAGCCGCCTCTCCCTTCCCAGCAACAGCAACCCATCACTGCCGAGGAACCACACCCTCCTCTTCCGAAATCCATTACCAGCAAGGACCAAAATGCACGGGAGACGCCGAAGTCATCGCATAAAACGATAGAGATCGAGAAAGGAGACACTCTTTGGGGACTCTCTAGAGAACATGGGGTATCCATTGATGCGATCAAAGAGGCGAACGGTCTTACAGGAGACACGATCTATGCTGGCAAGAAGCTTATCATTCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LysM

Protein Analysis

149

Amino Acids

15.72

Weight (kDa)

5.34

Isoelectric Point (pI)

59.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LysM PF01476 108 - 148 2.5e-14 LysM domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018509)

Species Orthologous Gene IDs
malus_domestica MD17G1264400.v1.1
prunus_persica Prupe.3G113700_v2.0.a1 Prupe.3G113700_v2.0.a1
pyrus_communis pycom17g26420
rosa_roxburghii Rroxscaffold_2G00113630
rosa_samantha Rh2AG344600 Rh2BG352800 Rh2BG352900 Rh2DG370800
rosa_wichuraiana Rw2G027530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 298
AciI CCGC 4 cut(s) 18, 21, 132, 194
AclWI GGATC 1 cut(s) 29
AcyI GRCGYC 1 cut(s) 293
AluBI AGCT 3 cut(s) 15, 110, 433
AluI AGCT 3 cut(s) 15, 110, 433
Alw26I GTCTC 3 cut(s) 284, 327, 402
AlwI GGATC 1 cut(s) 29
ApeKI GCWGC 1 cut(s) 190
AspS9I GGNCC 1 cut(s) 274
AvaII GGWCC 1 cut(s) 274
AxyI CCTNAGG 1 cut(s) 39
BbvI GCAGC 1 cut(s) 202
BccI CCATC 3 cut(s) 59, 193, 230
BceAI ACGGC 1 cut(s) 46
BciVI GTATCC 1 cut(s) 379
BcoDI GTCTC 3 cut(s) 284, 327, 402
BfaI CTAG 1 cut(s) 354
BfuI GTATCC 1 cut(s) 379
BisI GCNGC 3 cut(s) 21, 191, 194
BlsI GCNGC 3 cut(s) 22, 192, 195
Bme18I GGWCC 1 cut(s) 274
BmgT120I GGNCC 1 cut(s) 274
BmiI GGNNCC 1 cut(s) 237
BmsI GCATC 2 cut(s) 96, 367
BsaBI GATNNNNATC 1 cut(s) 320
BsaHI GRCGYC 1 cut(s) 293
BsaJI CCNNGG 1 cut(s) 231
BsaXI ACNNNNNCTCC 1 cut(s) 29
Bse118I RCCGGY 1 cut(s) 65
Bse21I CCTNAGG 1 cut(s) 39
Bse8I GATNNNNATC 1 cut(s) 320
BseDI CCNNGG 1 cut(s) 231
BseJI GATNNNNATC 1 cut(s) 320
BseMII CTCAG 1 cut(s) 182
BseRI GAGGAG 2 cut(s) 138, 237
BseXI GCAGC 1 cut(s) 202
BseYI CCCAGC 1 cut(s) 207
Bsh1285I CGRYCG 1 cut(s) 10
BsiEI CGRYCG 1 cut(s) 10
BsiSI CCGG 2 cut(s) 66, 84
BslFI GGGAC 1 cut(s) 360
BsmAI GTCTC 3 cut(s) 284, 327, 402
BsmBI CGTCTC 1 cut(s) 284
BsmFI GGGAC 1 cut(s) 360
BsmI GAATGC 1 cut(s) 99
Bsp143I GATC 4 cut(s) 34, 321, 381, 414
BspACI CCGC 4 cut(s) 18, 21, 132, 194
BspCNI CTCAG 1 cut(s) 181
BspLI GGNNCC 1 cut(s) 237
BspPI GGATC 1 cut(s) 29
BsrFI RCCGGY 1 cut(s) 65
BssAI RCCGGY 1 cut(s) 65
BssECI CCNNGG 1 cut(s) 231
BssMI GATC 4 cut(s) 34, 321, 381, 414
BssNI GRCGYC 1 cut(s) 293
Bst4CI ACNGT 1 cut(s) 398
Bst6I CTCTTC 1 cut(s) 255
BstACI GRCGYC 1 cut(s) 293
BstC8I GCNNGC 3 cut(s) 25, 67, 424
BstDEI CTNAG 3 cut(s) 39, 70, 168
BstKTI GATC 4 cut(s) 37, 324, 384, 417
BstMAI GTCTC 3 cut(s) 284, 327, 402
BstMBI GATC 4 cut(s) 34, 321, 381, 414
BstMCI CGRYCG 1 cut(s) 10
BstMWI GCNNNNNNNGC 3 cut(s) 62, 178, 187
BstV1I GCAGC 1 cut(s) 202
Bsu36I CCTNAGG 1 cut(s) 39
BsuI GTATCC 1 cut(s) 379
BtgZI GCGATG 4 cut(s) 37, 73, 171, 288
BtsI GCAGTG 1 cut(s) 225
BtsIMutI CAGTG 1 cut(s) 225
Cac8I GCNNGC 3 cut(s) 25, 67, 424
Cfr10I RCCGGY 1 cut(s) 65
Cfr13I GGNCC 1 cut(s) 274
CseI GACGC 1 cut(s) 301
CviAII CATG 2 cut(s) 362, 444
CviJI RGCY 7 cut(s) 15, 69, 110, 172, 181, 193, 433
CviKI_1 RGCY 7 cut(s) 15, 69, 110, 172, 181, 193, 433
DdeI CTNAG 3 cut(s) 39, 70, 168
DpnI GATC 4 cut(s) 36, 323, 383, 416
DpnII GATC 4 cut(s) 34, 321, 381, 414
DrdI GACNNNNNNGTC 1 cut(s) 298
DseDI GACNNNNNNGTC 1 cut(s) 298
Eam1104I CTCTTC 1 cut(s) 255
EarI CTCTTC 1 cut(s) 255
EciI GGCGGA 1 cut(s) 7
Eco47I GGWCC 1 cut(s) 274
Eco81I CCTNAGG 1 cut(s) 39
Esp3I CGTCTC 1 cut(s) 284
FaeI CATG 2 cut(s) 365, 447
FaiI YATR 5 cut(s) 95, 309, 363, 420, 445
FaqI GGGAC 1 cut(s) 360
FatI CATG 2 cut(s) 361, 443
Fnu4HI GCNGC 3 cut(s) 21, 191, 194
Fsp4HI GCNGC 3 cut(s) 21, 191, 194
FspBI CTAG 1 cut(s) 354
GluI GCNGC 3 cut(s) 21, 191, 194
GsaI CCCAGC 1 cut(s) 211
HapII CCGG 2 cut(s) 66, 84
HgaI GACGC 1 cut(s) 301
Hin1I GRCGYC 1 cut(s) 293
Hin1II CATG 2 cut(s) 365, 447
HincII GTYRAC 1 cut(s) 165
HindII GTYRAC 1 cut(s) 165
HindIII AAGCTT 1 cut(s) 431
HinfI GANTC 3 cut(s) 47, 161, 348
HpaII CCGG 2 cut(s) 66, 84
Hpy166II GTNNAC 1 cut(s) 165
Hpy188I TCNGA 3 cut(s) 7, 160, 255
Hpy188III TCNNGA 2 cut(s) 325, 354
Hpy8I GTNNAC 1 cut(s) 165
Hpy99I CGWCG 1 cut(s) 32
HpyAV CCTTC 1 cut(s) 213
HpyCH4III ACNGT 1 cut(s) 398
HpyCH4V TGCA 1 cut(s) 284
HpyF10VI GCNNNNNNNGC 3 cut(s) 62, 178, 187
HpyF3I CTNAG 3 cut(s) 39, 70, 168
Hsp92I GRCGYC 1 cut(s) 293
Hsp92II CATG 2 cut(s) 365, 447
KroI GCCGGC 1 cut(s) 65
KroNI GCCGGC 1 cut(s) 67
Kzo9I GATC 4 cut(s) 34, 321, 381, 414
LmnI GCTCC 1 cut(s) 20
LpnPI CCDG 7 cut(s) 9, 79, 97, 221, 280, 390, 408
Lsp1109I GCAGC 1 cut(s) 202
LweI GCATC 2 cut(s) 96, 367
MaeI CTAG 1 cut(s) 354
MalI GATC 4 cut(s) 36, 323, 383, 416
MboI GATC 4 cut(s) 34, 321, 381, 414
MboII GAAGA 2 cut(s) 152, 242
MlyI GAGTC 3 cut(s) 41, 170, 342
MmeI TCCRAC 1 cut(s) 30
MnlI CCTC 7 cut(s) 159, 192, 207, 226, 255, 258, 382
MroNI GCCGGC 1 cut(s) 65
MseI TTAA 1 cut(s) 123
MslI CAYNNNNRTG 1 cut(s) 92
MspA1I CMGCKG 1 cut(s) 23
MspI CCGG 2 cut(s) 66, 84
Mva1269I GAATGC 1 cut(s) 99
MwoI GCNNNNNNNGC 3 cut(s) 62, 178, 187
NaeI GCCGGC 1 cut(s) 67
NdeII GATC 4 cut(s) 34, 321, 381, 414
NgoMIV GCCGGC 1 cut(s) 65
NlaIII CATG 2 cut(s) 365, 447
NlaIV GGNNCC 1 cut(s) 237
NmeAIII GCCGAG 1 cut(s) 256
PcsI WCGNNNNNNNCGW 1 cut(s) 311
PctI GAATGC 1 cut(s) 99
PdiI GCCGGC 1 cut(s) 67
PkrI GCNGC 3 cut(s) 22, 192, 195
PleI GAGTC 3 cut(s) 41, 169, 342
PpsI GAGTC 3 cut(s) 41, 169, 342
PspFI CCCAGC 1 cut(s) 207
PspN4I GGNNCC 1 cut(s) 237
PspPI GGNCC 1 cut(s) 274
RseI CAYNNNNRTG 1 cut(s) 92
SaqAI TTAA 1 cut(s) 123
SatI GCNGC 3 cut(s) 21, 191, 194
Sau3AI GATC 4 cut(s) 34, 321, 381, 414
Sau96I GGNCC 1 cut(s) 274
SchI GAGTC 3 cut(s) 41, 170, 342
SetI ASST 3 cut(s) 17, 112, 435
SfaNI GCATC 2 cut(s) 96, 367
SinI GGWCC 1 cut(s) 274
SmiMI CAYNNNNRTG 1 cut(s) 92
SsiI CCGC 4 cut(s) 18, 21, 132, 194
SspMI CTAG 1 cut(s) 354
TaaI ACNGT 1 cut(s) 398
TaqI TCGA 1 cut(s) 324
TaqII GACCGA 1 cut(s) 24
TauI GCSGC 2 cut(s) 23, 196
Tru1I TTAA 1 cut(s) 123
Tru9I TTAA 1 cut(s) 123
TscAI CASTG 1 cut(s) 232
TseI GCWGC 1 cut(s) 190
TspDTI ATGAA 1 cut(s) 153
TspRI CASTG 1 cut(s) 232
VpaK11BI GGWCC 1 cut(s) 274
XbaI TCTAGA 1 cut(s) 353
XspI CTAG 1 cut(s) 354
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.