Rh2BG352800

Lysin motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0018509
Physical Location & Seq
Forward (+)
48352461 .. 48353800
1340 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG352800.1

Sequence Viewer

Length: 414 bp
ATGGCGGGTACGAGGCTGATGGTGATGGCGGCGATGCTGCATGTGGTTGCAATTTTGCTGAAGCAGGCTAAGGATTGGGATAGGTTGACAAAAGTTGGGATTCTACCAAGAACAGAACCCCAAAGCTCTCCCCTAAACCCAGGATCAATGGCCTCTTCCGACCCAAGCTCCACCCCCGGCAACGGCCACGCCAAGGACAACTCTGTAACCAAGACTGGCGGGCTTGTAGTCTTCTCGGGCATCGCCATTAGTATTCTCAAAGCCTTAACAAGAGCACAACCACTCAAGAAACTCTTCACCCACTCTGTGAGTCAACTCAGCTCCCATGAGAGCCTCAGCAACCCATTGTCATCAAGGCACCACAGCAGCCTCCTGAGCCTGTACGTCGTTGCTTTGATATCTCTTATTCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LysM

Protein Analysis

137

Amino Acids

14.56

Weight (kDa)

10.28

Isoelectric Point (pI)

39.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018509)

Species Orthologous Gene IDs
malus_domestica MD17G1264400.v1.1
prunus_persica Prupe.3G113700_v2.0.a1 Prupe.3G113700_v2.0.a1
pyrus_communis pycom17g26420
rosa_roxburghii Rroxscaffold_2G00113630
rosa_samantha Rh2AG344600 Rh2BG352800 Rh2BG352900 Rh2DG370800
rosa_wichuraiana Rw2G027530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 357
AciI CCGC 3 cut(s) 5, 29, 219
AclWI GGATC 1 cut(s) 151
AcoI YGGCCR 1 cut(s) 184
AcuI CTGAAG 1 cut(s) 80
AdeI CACNNNGTG 1 cut(s) 307
AfaI GTAC 2 cut(s) 10, 383
AfiI CCNNNNNNNGG 2 cut(s) 182, 193
AjnI CCWGG 1 cut(s) 139
AluBI AGCT 3 cut(s) 126, 168, 321
AluI AGCT 3 cut(s) 126, 168, 321
Alw21I GWGCWC 1 cut(s) 277
AlwI GGATC 1 cut(s) 151
Ama87I CYCGRG 1 cut(s) 235
AoxI GGCC 2 cut(s) 150, 184
ApeKI GCWGC 2 cut(s) 37, 366
Asp700I GAANNNNTTC 1 cut(s) 293
AsuC2I CCSGG 1 cut(s) 177
AsuHPI GGTGA 2 cut(s) 34, 289
AvaI CYCGRG 1 cut(s) 235
BanI GGYRCC 1 cut(s) 357
BbsI GAAGAC 1 cut(s) 223
Bbv12I GWGCWC 1 cut(s) 277
BbvCI CCTCAGC 1 cut(s) 335
BbvI GCAGC 2 cut(s) 24, 378
BccI CCATC 2 cut(s) 13, 19
BceAI ACGGC 1 cut(s) 199
BciT130I CCWGG 1 cut(s) 141
BcnI CCSGG 1 cut(s) 177
BisI GCNGC 3 cut(s) 30, 38, 367
BlsI GCNGC 3 cut(s) 31, 39, 368
Bme1390I CCNGG 2 cut(s) 141, 177
BmeT110I CYCGRG 1 cut(s) 235
BmiI GGNNCC 1 cut(s) 359
BmrFI CCNGG 2 cut(s) 141, 177
BmsI GCATC 2 cut(s) 24, 249
BpiI GAAGAC 1 cut(s) 223
Bpu10I CCTNAGC 3 cut(s) 69, 335, 374
BpuEI CTTGAG 1 cut(s) 269
BpuMI CCSGG 1 cut(s) 177
BsaJI CCNNGG 3 cut(s) 139, 175, 192
BsaXI ACNNNNNCTCC 2 cut(s) 152, 182
Bsc4I CCNNNNNNNGG 2 cut(s) 182, 193
Bse1I ACTGG 1 cut(s) 220
BseBI CCWGG 1 cut(s) 141
BseDI CCNNGG 3 cut(s) 139, 175, 192
BseLI CCNNNNNNNGG 2 cut(s) 182, 193
BseMII CTCAG 3 cut(s) 331, 349, 365
BseNI ACTGG 1 cut(s) 220
BseXI GCAGC 2 cut(s) 24, 378
BshFI GGCC 2 cut(s) 152, 186
BshNI GGYRCC 1 cut(s) 357
BsiHKAI GWGCWC 1 cut(s) 277
BsiHKCI CYCGRG 1 cut(s) 235
BsiSI CCGG 1 cut(s) 177
BslI CCNNNNNNNGG 2 cut(s) 182, 193
BsnI GGCC 2 cut(s) 152, 186
BsoBI CYCGRG 1 cut(s) 235
Bsp1286I GDGCHC 1 cut(s) 277
Bsp143I GATC 1 cut(s) 143
BspACI CCGC 3 cut(s) 5, 29, 219
BspANI GGCC 2 cut(s) 152, 186
BspCNI CTCAG 3 cut(s) 330, 348, 366
BspLI GGNNCC 1 cut(s) 359
BspPI GGATC 1 cut(s) 151
BspT107I GGYRCC 1 cut(s) 357
BsrI ACTGG 1 cut(s) 220
BssECI CCNNGG 3 cut(s) 139, 175, 192
BssMI GATC 1 cut(s) 143
BssT1I CCWWGG 1 cut(s) 192
Bst2UI CCWGG 1 cut(s) 141
Bst6I CTCTTC 2 cut(s) 160, 299
BstC8I GCNNGC 2 cut(s) 66, 221
BstDEI CTNAG 4 cut(s) 69, 317, 335, 374
BstKTI GATC 1 cut(s) 146
BstMBI GATC 1 cut(s) 143
BstMWI GCNNNNNNNGC 1 cut(s) 375
BstNI CCWGG 1 cut(s) 141
BstNSI RCATGY 1 cut(s) 44
BstSCI CCNGG 2 cut(s) 139, 175
BstV1I GCAGC 2 cut(s) 24, 378
BstV2I GAAGAC 1 cut(s) 223
BsuRI GGCC 2 cut(s) 152, 186
BtgZI GCGATG 2 cut(s) 47, 226
BtsIMutI CAGTG 1 cut(s) 409
Cac8I GCNNGC 2 cut(s) 66, 221
Csp6I GTAC 2 cut(s) 9, 382
CviAII CATG 2 cut(s) 41, 326
CviQI GTAC 2 cut(s) 9, 382
DdeI CTNAG 4 cut(s) 69, 317, 335, 374
DpnI GATC 1 cut(s) 145
DpnII GATC 1 cut(s) 143
DraIII CACNNNGTG 1 cut(s) 307
EaeI YGGCCR 1 cut(s) 184
Eam1104I CTCTTC 2 cut(s) 160, 299
EarI CTCTTC 2 cut(s) 160, 299
Eco130I CCWWGG 1 cut(s) 192
Eco32I GATATC 1 cut(s) 399
Eco57I CTGAAG 1 cut(s) 80
Eco88I CYCGRG 1 cut(s) 235
EcoRII CCWGG 1 cut(s) 139
EcoRV GATATC 1 cut(s) 399
EcoT14I CCWWGG 1 cut(s) 192
ErhI CCWWGG 1 cut(s) 192
FaeI CATG 2 cut(s) 44, 329
FaiI YATR 2 cut(s) 42, 327
FalI AAGNNNNNCTT 2 cut(s) 278, 310
FatI CATG 2 cut(s) 40, 325
FauI CCCGC 1 cut(s) 212
Fnu4HI GCNGC 3 cut(s) 30, 38, 367
Fsp4HI GCNGC 3 cut(s) 30, 38, 367
GluI GCNGC 3 cut(s) 30, 38, 367
HaeIII GGCC 2 cut(s) 152, 186
HapII CCGG 1 cut(s) 177
Hin1II CATG 2 cut(s) 44, 329
HincII GTYRAC 2 cut(s) 87, 314
HindII GTYRAC 2 cut(s) 87, 314
HinfI GANTC 2 cut(s) 100, 310
HpaII CCGG 1 cut(s) 177
HphI GGTGA 2 cut(s) 34, 289
Hpy166II GTNNAC 2 cut(s) 87, 314
Hpy188I TCNGA 1 cut(s) 160
Hpy188III TCNNGA 2 cut(s) 286, 373
Hpy8I GTNNAC 2 cut(s) 87, 314
Hpy99I CGWCG 1 cut(s) 389
HpyCH4IV ACGT 1 cut(s) 384
HpyCH4V TGCA 2 cut(s) 40, 50
HpyF10VI GCNNNNNNNGC 1 cut(s) 375
HpyF3I CTNAG 4 cut(s) 69, 317, 335, 374
HpySE526I ACGT 1 cut(s) 384
Hsp92II CATG 2 cut(s) 44, 329
Kzo9I GATC 1 cut(s) 143
LmnI GCTCC 2 cut(s) 173, 326
LpnPI CCDG 7 cut(s) 50, 126, 153, 190, 201, 386, 392
Lsp1109I GCAGC 2 cut(s) 24, 378
LweI GCATC 2 cut(s) 24, 249
MaeII ACGT 1 cut(s) 384
MaeIII GTNAC 1 cut(s) 205
MalI GATC 1 cut(s) 145
MboI GATC 1 cut(s) 143
MboII GAAGA 3 cut(s) 147, 223, 286
MhlI GDGCHC 1 cut(s) 277
MluCI AATT 1 cut(s) 51
MlyI GAGTC 1 cut(s) 319
MmeI TCCRAC 1 cut(s) 183
MnlI CCTC 4 cut(s) 6, 163, 344, 380
MroXI GAANNNNTTC 1 cut(s) 293
MseI TTAA 1 cut(s) 266
MspI CCGG 1 cut(s) 177
MspR9I CCNGG 2 cut(s) 141, 177
MvaI CCWGG 1 cut(s) 141
MwoI GCNNNNNNNGC 1 cut(s) 375
NciI CCSGG 1 cut(s) 177
NdeII GATC 1 cut(s) 143
NlaIII CATG 2 cut(s) 44, 329
NlaIV GGNNCC 1 cut(s) 359
NspI RCATGY 1 cut(s) 44
PdmI GAANNNNTTC 1 cut(s) 293
PfeI GAWTC 1 cut(s) 100
PkrI GCNGC 3 cut(s) 31, 39, 368
PleI GAGTC 1 cut(s) 318
PpsI GAGTC 1 cut(s) 318
Psp6I CCWGG 1 cut(s) 139
PspGI CCWGG 1 cut(s) 139
PspN4I GGNNCC 1 cut(s) 359
RsaI GTAC 2 cut(s) 10, 383
RsaNI GTAC 2 cut(s) 9, 382
SaqAI TTAA 1 cut(s) 266
SatI GCNGC 3 cut(s) 30, 38, 367
Sau3AI GATC 1 cut(s) 143
SchI GAGTC 1 cut(s) 319
ScrFI CCNGG 2 cut(s) 141, 177
SduI GDGCHC 1 cut(s) 277
SetI ASST 5 cut(s) 86, 128, 170, 323, 387
SfaNI GCATC 2 cut(s) 24, 249
SmlI CTYRAG 1 cut(s) 284
SmoI CTYRAG 1 cut(s) 284
Sse9I AATT 1 cut(s) 51
SsiI CCGC 3 cut(s) 5, 29, 219
StyD4I CCNGG 2 cut(s) 139, 175
StyI CCWWGG 1 cut(s) 192
TaiI ACGT 1 cut(s) 387
TasI AATT 1 cut(s) 51
TauI GCSGC 1 cut(s) 32
TfiI GAWTC 1 cut(s) 100
Tru1I TTAA 1 cut(s) 266
Tru9I TTAA 1 cut(s) 266
TseI GCWGC 2 cut(s) 37, 366
XceI RCATGY 1 cut(s) 44
XmnI GAANNNNTTC 1 cut(s) 293
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.