Rroxscaffold_2G00113630

Lysin motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0018509
Physical Location & Seq
Reverse (-)
39326209 .. 39330980
4772 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_2G00113630.1

Sequence Viewer

Length: 474 bp
ATGGGAGGTCCATACACGATCTTCCCCACCGATGCCCACTGTTCCGCCGTCCCACGAACTGCTCCTTCTCCGTCGTCCTCTAGATCTTCAATGAACGGAGGGCCTTTTCCTAGGCTTGACCGAGGAAAATCCCCATCACGATCACAAACACCGTTGTCGCTCCTCTGCGTCACTAGCACCCCTATCGCGGTCACCCCGCCTTCACAAACACTACCAACAACCTTGTCTATTCTCAAAGCCTTAAACCCTTTTAACAAGAACACAACCACTCAAGAAACTCTTCACCCACTCAATGAGTCTACTCAGCTCACATCACAGCCTCAGCAACCCATTGTTGTCAAAGAACGCCAGCCTACTGACCCTAAAATCATTACCAGCAATGCCAGCATGGACCAAAGTGTGCCAGACACACCGGAACCGTTGCACAGAACAATAGATATTGAGAAAGGAGATACTTTTTGGGGGCTCTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LysM

Protein Analysis

157

Amino Acids

16.92

Weight (kDa)

7.83

Isoelectric Point (pI)

56.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018509)

Species Orthologous Gene IDs
malus_domestica MD17G1264400.v1.1
prunus_persica Prupe.3G113700_v2.0.a1 Prupe.3G113700_v2.0.a1
pyrus_communis pycom17g26420
rosa_roxburghii Rroxscaffold_2G00113630
rosa_samantha Rh2AG344600 Rh2BG352800 Rh2BG352900 Rh2DG370800
rosa_wichuraiana Rw2G027530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 299
AccII CGCG 1 cut(s) 188
AciI CCGC 3 cut(s) 45, 188, 197
AfiI CCNNNNNNNGG 1 cut(s) 187
AgsI TTSAA 1 cut(s) 90
AluBI AGCT 1 cut(s) 307
AluI AGCT 1 cut(s) 307
AoxI GGCC 1 cut(s) 101
Asp700I GAANNNNTTC 1 cut(s) 279
AspA2I CCTAGG 1 cut(s) 110
AspS9I GGNCC 3 cut(s) 8, 101, 391
AsuHPI GGTGA 2 cut(s) 184, 275
AvaII GGWCC 2 cut(s) 8, 391
AvrII CCTAGG 1 cut(s) 110
BanII GRGCYC 1 cut(s) 468
BbvCI CCTCAGC 1 cut(s) 321
BccI CCATC 1 cut(s) 142
BceAI ACGGC 1 cut(s) 32
BcgI CGANNNNNNTGC 2 cut(s) 166, 200
BfaI CTAG 3 cut(s) 81, 111, 174
BglII AGATCT 1 cut(s) 83
BlnI CCTAGG 1 cut(s) 110
Bme18I GGWCC 2 cut(s) 8, 391
BmgT120I GGNCC 3 cut(s) 8, 101, 391
BmiI GGNNCC 1 cut(s) 417
BmsI GCATC 1 cut(s) 22
Bpu10I CCTNAGC 1 cut(s) 321
BpuEI CTTGAG 1 cut(s) 255
BsaJI CCNNGG 2 cut(s) 110, 121
BsaWI WCCGGW 1 cut(s) 412
Bsc4I CCNNNNNNNGG 1 cut(s) 187
Bse3DI GCAATG 1 cut(s) 385
BseDI CCNNGG 2 cut(s) 110, 121
BseLI CCNNNNNNNGG 1 cut(s) 187
BseMI GCAATG 1 cut(s) 385
BseMII CTCAG 2 cut(s) 317, 335
BseRI GAGGAG 1 cut(s) 152
Bsh1236I CGCG 1 cut(s) 188
BshFI GGCC 1 cut(s) 103
BsiSI CCGG 1 cut(s) 413
BslFI GGGAC 1 cut(s) 35
BslI CCNNNNNNNGG 1 cut(s) 187
BsmFI GGGAC 1 cut(s) 35
BsnI GGCC 1 cut(s) 103
Bsp1286I GDGCHC 1 cut(s) 468
Bsp143I GATC 3 cut(s) 18, 83, 140
BspACI CCGC 3 cut(s) 45, 188, 197
BspANI GGCC 1 cut(s) 103
BspCNI CTCAG 2 cut(s) 316, 334
BspFNI CGCG 1 cut(s) 188
BspLI GGNNCC 1 cut(s) 417
BsrDI GCAATG 1 cut(s) 385
BssECI CCNNGG 2 cut(s) 110, 121
BssMI GATC 3 cut(s) 18, 83, 140
BssT1I CCWWGG 1 cut(s) 110
Bst4CI ACNGT 3 cut(s) 41, 153, 420
Bst6I CTCTTC 1 cut(s) 285
BstC8I GCNNGC 2 cut(s) 350, 385
BstDEI CTNAG 2 cut(s) 303, 321
BstEII GGTNACC 1 cut(s) 190
BstFNI CGCG 1 cut(s) 188
BstKTI GATC 3 cut(s) 21, 86, 143
BstMBI GATC 3 cut(s) 18, 83, 140
BstMWI GCNNNNNNNGC 2 cut(s) 174, 384
BstPI GGTNACC 1 cut(s) 190
BstUI CGCG 1 cut(s) 188
BstX2I RGATCY 1 cut(s) 83
BstYI RGATCY 1 cut(s) 83
BsuRI GGCC 1 cut(s) 103
BtsIMutI CAGTG 1 cut(s) 37
Cac8I GCNNGC 2 cut(s) 350, 385
Cfr13I GGNCC 3 cut(s) 8, 101, 391
CseI GACGC 1 cut(s) 157
CviAII CATG 1 cut(s) 388
CviJI RGCY 7 cut(s) 103, 115, 239, 307, 319, 352, 466
CviKI_1 RGCY 7 cut(s) 103, 115, 239, 307, 319, 352, 466
DdeI CTNAG 2 cut(s) 303, 321
DpnI GATC 3 cut(s) 20, 85, 142
DpnII GATC 3 cut(s) 18, 83, 140
Eam1104I CTCTTC 1 cut(s) 285
EarI CTCTTC 1 cut(s) 285
EciI GGCGGA 1 cut(s) 34
Eco130I CCWWGG 1 cut(s) 110
Eco24I GRGCYC 1 cut(s) 468
Eco47I GGWCC 2 cut(s) 8, 391
Eco91I GGTNACC 1 cut(s) 190
EcoO109I RGGNCCY 1 cut(s) 101
EcoO65I GGTNACC 1 cut(s) 190
EcoT14I CCWWGG 1 cut(s) 110
EcoT38I GRGCYC 1 cut(s) 468
ErhI CCWWGG 1 cut(s) 110
FaeI CATG 1 cut(s) 391
FaiI YATR 2 cut(s) 13, 389
FalI AAGNNNNNCTT 2 cut(s) 264, 296
FaqI GGGAC 1 cut(s) 35
FatI CATG 1 cut(s) 387
FauI CCCGC 1 cut(s) 204
FblI GTMKAC 1 cut(s) 299
FriOI GRGCYC 1 cut(s) 468
FspBI CTAG 3 cut(s) 81, 111, 174
HaeIII GGCC 1 cut(s) 103
HapII CCGG 1 cut(s) 413
HgaI GACGC 1 cut(s) 157
Hin1II CATG 1 cut(s) 391
HinfI GANTC 1 cut(s) 296
HpaII CCGG 1 cut(s) 413
HphI GGTGA 2 cut(s) 184, 275
Hpy166II GTNNAC 1 cut(s) 300
Hpy188III TCNNGA 4 cut(s) 81, 138, 272, 471
Hpy8I GTNNAC 1 cut(s) 300
Hpy99I CGWCG 1 cut(s) 76
HpyAV CCTTC 2 cut(s) 75, 210
HpyCH4III ACNGT 3 cut(s) 41, 153, 420
HpyCH4V TGCA 1 cut(s) 424
HpyF10VI GCNNNNNNNGC 2 cut(s) 174, 384
HpyF3I CTNAG 2 cut(s) 303, 321
Hsp92II CATG 1 cut(s) 391
Kzo9I GATC 3 cut(s) 18, 83, 140
LmnI GCTCC 2 cut(s) 67, 165
LpnPI CCDG 5 cut(s) 362, 388, 397, 417, 426
LweI GCATC 1 cut(s) 22
MaeI CTAG 3 cut(s) 81, 111, 174
MaeIII GTNAC 2 cut(s) 169, 190
MalI GATC 3 cut(s) 20, 85, 142
MboI GATC 3 cut(s) 18, 83, 140
MboII GAAGA 3 cut(s) 13, 78, 272
MflI RGATCY 1 cut(s) 83
MhlI GDGCHC 1 cut(s) 468
MlyI GAGTC 1 cut(s) 305
MnlI CCTC 5 cut(s) 88, 92, 116, 173, 330
MroXI GAANNNNTTC 1 cut(s) 279
MseI TTAA 2 cut(s) 242, 252
MspI CCGG 1 cut(s) 413
MvnI CGCG 1 cut(s) 188
MwoI GCNNNNNNNGC 2 cut(s) 174, 384
NdeII GATC 3 cut(s) 18, 83, 140
NlaIII CATG 1 cut(s) 391
NlaIV GGNNCC 1 cut(s) 417
NmuCI GTSAC 2 cut(s) 169, 190
PdmI GAANNNNTTC 1 cut(s) 279
PleI GAGTC 1 cut(s) 304
PpsI GAGTC 1 cut(s) 304
PspEI GGTNACC 1 cut(s) 190
PspN4I GGNNCC 1 cut(s) 417
PspPI GGNCC 3 cut(s) 8, 101, 391
PsuI RGATCY 1 cut(s) 83
SaqAI TTAA 2 cut(s) 242, 252
Sau3AI GATC 3 cut(s) 18, 83, 140
Sau96I GGNCC 3 cut(s) 8, 101, 391
SchI GAGTC 1 cut(s) 305
SduI GDGCHC 1 cut(s) 468
SetI ASST 3 cut(s) 10, 224, 309
SfaNI GCATC 1 cut(s) 22
SinI GGWCC 2 cut(s) 8, 391
SmlI CTYRAG 1 cut(s) 270
SmoI CTYRAG 1 cut(s) 270
SsiI CCGC 3 cut(s) 45, 188, 197
SspMI CTAG 3 cut(s) 81, 111, 174
StyI CCWWGG 1 cut(s) 110
TaaI ACNGT 3 cut(s) 41, 153, 420
TaqII GACCGA 1 cut(s) 135
Tru1I TTAA 2 cut(s) 242, 252
Tru9I TTAA 2 cut(s) 242, 252
TscAI CASTG 1 cut(s) 44
TseFI GTSAC 2 cut(s) 169, 190
Tsp45I GTSAC 2 cut(s) 169, 190
TspDTI ATGAA 1 cut(s) 107
TspGWI ACGGA 2 cut(s) 60, 111
TspRI CASTG 1 cut(s) 44
VpaK11BI GGWCC 2 cut(s) 8, 391
XbaI TCTAGA 1 cut(s) 80
XmaJI CCTAGG 1 cut(s) 110
XmiI GTMKAC 1 cut(s) 299
XmnI GAANNNNTTC 1 cut(s) 279
XspI CTAG 3 cut(s) 81, 111, 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.