Rw2G027530

Lysin motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0018509
Physical Location & Seq
Reverse (-)
43211899 .. 43220658
8760 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G027530.1

Sequence Viewer

Length: 321 bp
ATGGCCTCTTCCGACCCAAGCTCCATCCCTGGCGACGGCGATGCCAAGGACAACTCCGTAGCCAAGACTGCCGGGCTTGTGGTCTTCTCGGGCATCGCCATTAGTATTCTCAAAGCCTTAAACCCTTTTAACAAGAGCACAACCACTCAAGAAACTCTTCACCCACTCTGTTACACACCGGAACCGCTGCACAGAACAATAGATATTGAGAAAGGAGATACTCTTTGGGGGCTCTCTAGAAGATATGGGGTACACTTTTTCTGGGCTAATGGTATTAAAGGGGACACCATCTCCGCAGGCAAGAAGCTCGTCATTCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LysM

Protein Analysis

106

Amino Acids

11.35

Weight (kDa)

7.9

Isoelectric Point (pI)

23.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LysM PF01476 69 - 106 5e-09 LysM domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018509)

Species Orthologous Gene IDs
malus_domestica MD17G1264400.v1.1
prunus_persica Prupe.3G113700_v2.0.a1 Prupe.3G113700_v2.0.a1
pyrus_communis pycom17g26420
rosa_roxburghii Rroxscaffold_2G00113630
rosa_samantha Rh2AG344600 Rh2BG352800 Rh2BG352900 Rh2DG370800
rosa_wichuraiana Rw2G027530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 185, 294
AfaI GTAC 1 cut(s) 252
AfiI CCNNNNNNNGG 1 cut(s) 35
AjnI CCWGG 1 cut(s) 28
AluBI AGCT 2 cut(s) 21, 307
AluI AGCT 2 cut(s) 21, 307
Alw21I GWGCWC 1 cut(s) 140
Ama87I CYCGRG 1 cut(s) 88
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 187
Asp700I GAANNNNTTC 1 cut(s) 156
AsuC2I CCSGG 1 cut(s) 73
AsuHPI GGTGA 1 cut(s) 152
AvaI CYCGRG 1 cut(s) 88
BanII GRGCYC 1 cut(s) 234
BbsI GAAGAC 1 cut(s) 76
Bbv12I GWGCWC 1 cut(s) 140
BbvI GCAGC 1 cut(s) 174
BccI CCATC 2 cut(s) 32, 296
BceAI ACGGC 1 cut(s) 52
BcgI CGANNNNNNTGC 3 cut(s) 23, 57, 289
BciT130I CCWGG 1 cut(s) 30
BcnI CCSGG 1 cut(s) 73
BfaI CTAG 1 cut(s) 237
BisI GCNGC 1 cut(s) 188
BlsI GCNGC 1 cut(s) 189
Bme1390I CCNGG 2 cut(s) 30, 73
BmeT110I CYCGRG 1 cut(s) 88
BmiI GGNNCC 1 cut(s) 183
BmrFI CCNGG 2 cut(s) 30, 73
BmsI GCATC 2 cut(s) 31, 102
BpiI GAAGAC 1 cut(s) 76
BpuEI CTTGAG 1 cut(s) 132
BpuMI CCSGG 1 cut(s) 73
BsaJI CCNNGG 2 cut(s) 28, 45
BsaWI WCCGGW 1 cut(s) 178
BsaXI ACNNNNNCTCC 4 cut(s) 5, 35, 275, 305
Bsc4I CCNNNNNNNGG 1 cut(s) 35
BseBI CCWGG 1 cut(s) 30
BseDI CCNNGG 2 cut(s) 28, 45
BseGI GGATG 1 cut(s) 24
BseLI CCNNNNNNNGG 1 cut(s) 35
BseXI GCAGC 1 cut(s) 174
BsgI GTGCAG 1 cut(s) 173
BshFI GGCC 1 cut(s) 5
BsiHKAI GWGCWC 1 cut(s) 140
BsiHKCI CYCGRG 1 cut(s) 88
BsiSI CCGG 2 cut(s) 72, 179
BslFI GGGAC 1 cut(s) 296
BslI CCNNNNNNNGG 1 cut(s) 35
BsmFI GGGAC 1 cut(s) 296
BsnI GGCC 1 cut(s) 5
BsoBI CYCGRG 1 cut(s) 88
Bsp1286I GDGCHC 2 cut(s) 140, 234
BspACI CCGC 2 cut(s) 185, 294
BspANI GGCC 1 cut(s) 5
BspLI GGNNCC 1 cut(s) 183
BssECI CCNNGG 2 cut(s) 28, 45
BssT1I CCWWGG 1 cut(s) 45
Bst2UI CCWGG 1 cut(s) 30
Bst6I CTCTTC 2 cut(s) 13, 162
BstC8I GCNNGC 1 cut(s) 298
BstF5I GGATG 1 cut(s) 24
BstMWI GCNNNNNNNGC 1 cut(s) 68
BstNI CCWGG 1 cut(s) 30
BstSCI CCNGG 2 cut(s) 28, 71
BstV1I GCAGC 1 cut(s) 174
BstV2I GAAGAC 1 cut(s) 76
BsuRI GGCC 1 cut(s) 5
BtgZI GCGATG 2 cut(s) 54, 79
BtsCI GGATG 1 cut(s) 24
Cac8I GCNNGC 1 cut(s) 298
Csp6I GTAC 1 cut(s) 251
CviAII CATG 1 cut(s) 318
CviJI RGCY 8 cut(s) 5, 21, 62, 76, 116, 232, 266, 307
CviKI_1 RGCY 8 cut(s) 5, 21, 62, 76, 116, 232, 266, 307
CviQI GTAC 1 cut(s) 251
Eam1104I CTCTTC 2 cut(s) 13, 162
EarI CTCTTC 2 cut(s) 13, 162
Eco130I CCWWGG 1 cut(s) 45
Eco24I GRGCYC 1 cut(s) 234
Eco88I CYCGRG 1 cut(s) 88
EcoRII CCWGG 1 cut(s) 28
EcoT14I CCWWGG 1 cut(s) 45
EcoT38I GRGCYC 1 cut(s) 234
ErhI CCWWGG 1 cut(s) 45
FaeI CATG 1 cut(s) 321
FaiI YATR 2 cut(s) 246, 319
FalI AAGNNNNNCTT 2 cut(s) 141, 173
FaqI GGGAC 1 cut(s) 296
FatI CATG 1 cut(s) 317
Fnu4HI GCNGC 1 cut(s) 188
FokI GGATG 1 cut(s) 11
FriOI GRGCYC 1 cut(s) 234
Fsp4HI GCNGC 1 cut(s) 188
FspBI CTAG 1 cut(s) 237
GluI GCNGC 1 cut(s) 188
HaeIII GGCC 1 cut(s) 5
HapII CCGG 2 cut(s) 72, 179
Hin1II CATG 1 cut(s) 321
HpaII CCGG 2 cut(s) 72, 179
HphI GGTGA 1 cut(s) 152
Hpy166II GTNNAC 1 cut(s) 253
Hpy188I TCNGA 1 cut(s) 13
Hpy188III TCNNGA 2 cut(s) 149, 237
Hpy8I GTNNAC 1 cut(s) 253
Hpy99I CGWCG 1 cut(s) 38
HpyCH4V TGCA 1 cut(s) 190
HpyF10VI GCNNNNNNNGC 1 cut(s) 68
Hsp92II CATG 1 cut(s) 321
LmnI GCTCC 1 cut(s) 26
LpnPI CCDG 6 cut(s) 15, 42, 85, 192, 247, 282
Lsp1109I GCAGC 1 cut(s) 174
LweI GCATC 2 cut(s) 31, 102
MaeI CTAG 1 cut(s) 237
MaeIII GTNAC 1 cut(s) 170
MboII GAAGA 3 cut(s) 76, 149, 252
MhlI GDGCHC 2 cut(s) 140, 234
MmeI TCCRAC 1 cut(s) 36
MnlI CCTC 1 cut(s) 16
MroXI GAANNNNTTC 1 cut(s) 156
MseI TTAA 3 cut(s) 119, 129, 276
MspA1I CMGCKG 1 cut(s) 187
MspI CCGG 2 cut(s) 72, 179
MspR9I CCNGG 2 cut(s) 30, 73
MvaI CCWGG 1 cut(s) 30
MwoI GCNNNNNNNGC 1 cut(s) 68
NciI CCSGG 1 cut(s) 73
NlaIII CATG 1 cut(s) 321
NlaIV GGNNCC 1 cut(s) 183
PdmI GAANNNNTTC 1 cut(s) 156
PkrI GCNGC 1 cut(s) 189
Psp6I CCWGG 1 cut(s) 28
PspGI CCWGG 1 cut(s) 28
PspN4I GGNNCC 1 cut(s) 183
RsaI GTAC 1 cut(s) 252
RsaNI GTAC 1 cut(s) 251
SaqAI TTAA 3 cut(s) 119, 129, 276
SatI GCNGC 1 cut(s) 188
ScrFI CCNGG 2 cut(s) 30, 73
SduI GDGCHC 2 cut(s) 140, 234
SetI ASST 2 cut(s) 23, 309
SfaNI GCATC 2 cut(s) 31, 102
SmlI CTYRAG 1 cut(s) 147
SmoI CTYRAG 1 cut(s) 147
SsiI CCGC 2 cut(s) 185, 294
SspMI CTAG 1 cut(s) 237
StyD4I CCNGG 2 cut(s) 28, 71
StyI CCWWGG 1 cut(s) 45
Tru1I TTAA 3 cut(s) 119, 129, 276
Tru9I TTAA 3 cut(s) 119, 129, 276
TseI GCWGC 1 cut(s) 187
TspGWI ACGGA 1 cut(s) 46
XbaI TCTAGA 1 cut(s) 236
XmnI GAANNNNTTC 1 cut(s) 156
XspI CTAG 1 cut(s) 237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.