Rh2AG344600

Lysin motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0018509
Physical Location & Seq
Forward (+)
50640237 .. 50641870
1634 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG344600.1

Sequence Viewer

Length: 390 bp
ATGGCCTCTTCCGACCCAAGCTCCATCCCCGGCGACGGCGATGCCAAGGACAACTCCGTAGCCAAGACTGCCGGGCTTGTGCAACCCATTGTCGTCAAGGCACCACAGCAGCCTCCTGAGCCTAAAATCATTACCAGCAATGCCAGCATGGACCAAAGTGTGCCAGACACACCGGAACCGCTGCACAGAACAATAGATATTGAGAAAGGAGATACTCTTTGGGGGCTCTCTAGAAGATATGGGTTGATATATTTGTTCCATGATATATCTATGTATCAATTGACGAAATCAAAGAGGCTAATGGTATTAAAGGGGACACCATCTCCGCTGGCAAGAAGCTCGTCATTCCATGAAAACTTATTCTCTGTGTCTCGGGGTAGTATAGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LysM

Protein Analysis

129

Amino Acids

13.98

Weight (kDa)

8.02

Isoelectric Point (pI)

53.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018509)

Species Orthologous Gene IDs
malus_domestica MD17G1264400.v1.1
prunus_persica Prupe.3G113700_v2.0.a1 Prupe.3G113700_v2.0.a1
pyrus_communis pycom17g26420
rosa_roxburghii Rroxscaffold_2G00113630
rosa_samantha Rh2AG344600 Rh2BG352800 Rh2BG352900 Rh2DG370800
rosa_wichuraiana Rw2G027530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 100
AciI CCGC 2 cut(s) 179, 326
AfiI CCNNNNNNNGG 1 cut(s) 35
AluBI AGCT 2 cut(s) 21, 339
AluI AGCT 2 cut(s) 21, 339
Alw26I GTCTC 1 cut(s) 375
Ama87I CYCGRG 1 cut(s) 372
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 2 cut(s) 109, 181
AspS9I GGNCC 1 cut(s) 151
AsuC2I CCSGG 2 cut(s) 30, 73
AvaI CYCGRG 1 cut(s) 372
AvaII GGWCC 1 cut(s) 151
BanI GGYRCC 1 cut(s) 100
BanII GRGCYC 1 cut(s) 228
BbvI GCAGC 2 cut(s) 121, 168
BccI CCATC 2 cut(s) 32, 328
BceAI ACGGC 1 cut(s) 52
BcgI CGANNNNNNTGC 4 cut(s) 23, 57, 321, 355
BcnI CCSGG 2 cut(s) 30, 73
BcoDI GTCTC 1 cut(s) 375
BfaI CTAG 1 cut(s) 231
BisI GCNGC 2 cut(s) 110, 182
BlsI GCNGC 2 cut(s) 111, 183
Bme1390I CCNGG 2 cut(s) 30, 73
Bme18I GGWCC 1 cut(s) 151
BmeT110I CYCGRG 1 cut(s) 372
BmgT120I GGNCC 1 cut(s) 151
BmiI GGNNCC 2 cut(s) 102, 177
BmrFI CCNGG 2 cut(s) 30, 73
BmsI GCATC 1 cut(s) 31
Bpu10I CCTNAGC 1 cut(s) 117
BpuMI CCSGG 2 cut(s) 30, 73
BsaJI CCNNGG 2 cut(s) 28, 45
BsaWI WCCGGW 1 cut(s) 172
BsaXI ACNNNNNCTCC 4 cut(s) 5, 35, 307, 337
Bsc4I CCNNNNNNNGG 1 cut(s) 35
Bse3DI GCAATG 1 cut(s) 145
BseDI CCNNGG 2 cut(s) 28, 45
BseGI GGATG 1 cut(s) 24
BseLI CCNNNNNNNGG 1 cut(s) 35
BseMI GCAATG 1 cut(s) 145
BseMII CTCAG 1 cut(s) 108
BseXI GCAGC 2 cut(s) 121, 168
BsgI GTGCAG 1 cut(s) 167
BshFI GGCC 1 cut(s) 5
BshNI GGYRCC 1 cut(s) 100
BsiHKCI CYCGRG 1 cut(s) 372
BsiSI CCGG 3 cut(s) 30, 72, 173
BslFI GGGAC 1 cut(s) 328
BslI CCNNNNNNNGG 1 cut(s) 35
BsmAI GTCTC 1 cut(s) 375
BsmFI GGGAC 1 cut(s) 328
BsnI GGCC 1 cut(s) 5
BsoBI CYCGRG 1 cut(s) 372
Bsp1286I GDGCHC 1 cut(s) 228
BspACI CCGC 2 cut(s) 179, 326
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 109
BspLI GGNNCC 2 cut(s) 102, 177
BspT107I GGYRCC 1 cut(s) 100
BsrDI GCAATG 1 cut(s) 145
BssECI CCNNGG 2 cut(s) 28, 45
BssT1I CCWWGG 1 cut(s) 45
Bst6I CTCTTC 1 cut(s) 13
BstC8I GCNNGC 2 cut(s) 145, 330
BstDEI CTNAG 1 cut(s) 117
BstF5I GGATG 1 cut(s) 24
BstMAI GTCTC 1 cut(s) 375
BstMWI GCNNNNNNNGC 3 cut(s) 68, 118, 144
BstSCI CCNGG 2 cut(s) 28, 71
BstV1I GCAGC 2 cut(s) 121, 168
BsuRI GGCC 1 cut(s) 5
BtgZI GCGATG 1 cut(s) 54
BtsCI GGATG 1 cut(s) 24
Cac8I GCNNGC 2 cut(s) 145, 330
Cfr13I GGNCC 1 cut(s) 151
CviAII CATG 3 cut(s) 148, 260, 350
CviJI RGCY 9 cut(s) 5, 21, 62, 76, 112, 121, 226, 298, 339
CviKI_1 RGCY 9 cut(s) 5, 21, 62, 76, 112, 121, 226, 298, 339
DdeI CTNAG 1 cut(s) 117
Eam1104I CTCTTC 1 cut(s) 13
EarI CTCTTC 1 cut(s) 13
Eco130I CCWWGG 1 cut(s) 45
Eco24I GRGCYC 1 cut(s) 228
Eco47I GGWCC 1 cut(s) 151
Eco88I CYCGRG 1 cut(s) 372
EcoT14I CCWWGG 1 cut(s) 45
EcoT38I GRGCYC 1 cut(s) 228
ErhI CCWWGG 1 cut(s) 45
FaeI CATG 3 cut(s) 151, 263, 353
FaiI YATR 8 cut(s) 149, 240, 250, 261, 266, 272, 351, 383
FaqI GGGAC 1 cut(s) 328
FatI CATG 3 cut(s) 147, 259, 349
Fnu4HI GCNGC 2 cut(s) 110, 182
FokI GGATG 1 cut(s) 11
FriOI GRGCYC 1 cut(s) 228
Fsp4HI GCNGC 2 cut(s) 110, 182
FspBI CTAG 1 cut(s) 231
GluI GCNGC 2 cut(s) 110, 182
HaeIII GGCC 1 cut(s) 5
HapII CCGG 3 cut(s) 30, 72, 173
Hin1II CATG 3 cut(s) 151, 263, 353
HpaII CCGG 3 cut(s) 30, 72, 173
Hpy188I TCNGA 1 cut(s) 13
Hpy188III TCNNGA 2 cut(s) 116, 231
Hpy99I CGWCG 1 cut(s) 38
HpyCH4V TGCA 2 cut(s) 82, 184
HpyF10VI GCNNNNNNNGC 3 cut(s) 68, 118, 144
HpyF3I CTNAG 1 cut(s) 117
Hsp92II CATG 3 cut(s) 151, 263, 353
LmnI GCTCC 1 cut(s) 26
LpnPI CCDG 8 cut(s) 43, 85, 129, 148, 157, 177, 186, 314
Lsp1109I GCAGC 2 cut(s) 121, 168
LweI GCATC 1 cut(s) 31
MaeI CTAG 1 cut(s) 231
MboII GAAGA 1 cut(s) 246
MfeI CAATTG 1 cut(s) 278
MhlI GDGCHC 1 cut(s) 228
MluCI AATT 1 cut(s) 278
MmeI TCCRAC 1 cut(s) 36
MnlI CCTC 3 cut(s) 16, 123, 288
MseI TTAA 1 cut(s) 308
MspA1I CMGCKG 2 cut(s) 181, 328
MspI CCGG 3 cut(s) 30, 72, 173
MspR9I CCNGG 2 cut(s) 30, 73
MunI CAATTG 1 cut(s) 278
MwoI GCNNNNNNNGC 3 cut(s) 68, 118, 144
NciI CCSGG 2 cut(s) 30, 73
NlaIII CATG 3 cut(s) 151, 263, 353
NlaIV GGNNCC 2 cut(s) 102, 177
PkrI GCNGC 2 cut(s) 111, 183
PspN4I GGNNCC 2 cut(s) 102, 177
PspPI GGNCC 1 cut(s) 151
SaqAI TTAA 1 cut(s) 308
SatI GCNGC 2 cut(s) 110, 182
Sau96I GGNCC 1 cut(s) 151
ScrFI CCNGG 2 cut(s) 30, 73
SduI GDGCHC 1 cut(s) 228
SetI ASST 2 cut(s) 23, 341
SfaNI GCATC 1 cut(s) 31
SinI GGWCC 1 cut(s) 151
Sse9I AATT 1 cut(s) 278
SsiI CCGC 2 cut(s) 179, 326
SspMI CTAG 1 cut(s) 231
StyD4I CCNGG 2 cut(s) 28, 71
StyI CCWWGG 1 cut(s) 45
TasI AATT 1 cut(s) 278
Tru1I TTAA 1 cut(s) 308
Tru9I TTAA 1 cut(s) 308
TseI GCWGC 2 cut(s) 109, 181
TspDTI ATGAA 1 cut(s) 366
TspGWI ACGGA 1 cut(s) 46
VpaK11BI GGWCC 1 cut(s) 151
XbaI TCTAGA 1 cut(s) 230
XspI CTAG 1 cut(s) 231
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.