Prupe.3G113700_v2.0.a1

Lysin motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0018509
Physical Location & Seq
Forward (+)
9539312 .. 9541422
2111 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G113700.1

Sequence Viewer

Length: 456 bp
ATGGCCGACCCAGGCTCCGCCGCTGGCGACGGCGATTCCAAAGACAATTCCGTCGCCAAGACTGCCGGATTGGTGGTCTTCTCGGGCATCGCCATGAGCATTCTCAAAGCGTTAAACCCTTTCAACAAAAAAGGAAATGAAGAAACTCCACTCAGTGAGTCAACTCAACCCATTCAGCTGACTTCTTCGCAGCCTCAGCCTCAGCCTCAGCCTCTCCCTCCCCAACAACAACCCATTCTCAAGGAACCACACACTCCTCTGCCCAAAACCATTACGAGCATTGACCAAAATGTGCCAGACACACTGAAGTCGTCGCATAAGACAATACAGATTGAGAAAGGAGATACACTTTGGGGGCTCTCTAGAGAATATGGGGTTTCCATTGATGCGATCAAAGAGGCTAACGGTCTTACAGGGGATACAATCTATGCTGGCAAGAAGCTTATCATTCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LysM

Protein Analysis

152

Amino Acids

16.04

Weight (kDa)

5.64

Isoelectric Point (pI)

45.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018509)

Species Orthologous Gene IDs
malus_domestica MD17G1264400.v1.1
prunus_persica Prupe.3G113700_v2.0.a1 Prupe.3G113700_v2.0.a1
pyrus_communis pycom17g26420
rosa_roxburghii Rroxscaffold_2G00113630
rosa_samantha Rh2AG344600 Rh2BG352800 Rh2BG352900 Rh2DG370800
rosa_wichuraiana Rw2G027530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 50
AciI CCGC 2 cut(s) 18, 21
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 1 cut(s) 326
AdeI CACNNNGTG 1 cut(s) 155
AgsI TTSAA 1 cut(s) 124
AjnI CCWGG 1 cut(s) 10
AluBI AGCT 2 cut(s) 178, 442
AluI AGCT 2 cut(s) 178, 442
Ama87I CYCGRG 1 cut(s) 82
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 190
AvaI CYCGRG 1 cut(s) 82
BanII GRGCYC 1 cut(s) 360
BbsI GAAGAC 1 cut(s) 70
BbvCI CCTCAGC 3 cut(s) 195, 201, 207
BbvI GCAGC 1 cut(s) 202
BceAI ACGGC 1 cut(s) 46
BciT130I CCWGG 1 cut(s) 12
BciVI GTATCC 1 cut(s) 412
BfaI CTAG 1 cut(s) 363
BfuI GTATCC 1 cut(s) 412
BisI GCNGC 2 cut(s) 21, 191
BlsI GCNGC 2 cut(s) 22, 192
Bme1390I CCNGG 1 cut(s) 12
BmeT110I CYCGRG 1 cut(s) 82
BmiI GGNNCC 2 cut(s) 16, 246
BmrFI CCNGG 1 cut(s) 12
BmsI GCATC 2 cut(s) 96, 376
BpiI GAAGAC 1 cut(s) 70
Bpu10I CCTNAGC 3 cut(s) 195, 201, 207
BpuEI CTTGAG 1 cut(s) 224
BsaJI CCNNGG 1 cut(s) 10
BsaXI ACNNNNNCTCC 1 cut(s) 29
BseBI CCWGG 1 cut(s) 12
BseDI CCNNGG 1 cut(s) 10
BseMII CTCAG 4 cut(s) 166, 209, 215, 221
BseRI GAGGAG 1 cut(s) 246
BseXI GCAGC 1 cut(s) 202
BshFI GGCC 1 cut(s) 5
BsiHKCI CYCGRG 1 cut(s) 82
BsiSI CCGG 1 cut(s) 66
BsmI GAATGC 1 cut(s) 99
BsnI GGCC 1 cut(s) 5
BsoBI CYCGRG 1 cut(s) 82
Bsp1286I GDGCHC 1 cut(s) 360
Bsp143I GATC 1 cut(s) 390
BspACI CCGC 2 cut(s) 18, 21
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 4 cut(s) 165, 208, 214, 220
BspLI GGNNCC 2 cut(s) 16, 246
BssECI CCNNGG 1 cut(s) 10
BssMI GATC 1 cut(s) 390
Bst2UI CCWGG 1 cut(s) 12
Bst4CI ACNGT 1 cut(s) 407
BstC8I GCNNGC 2 cut(s) 25, 433
BstDEI CTNAG 4 cut(s) 152, 195, 201, 207
BstKTI GATC 1 cut(s) 393
BstMBI GATC 1 cut(s) 390
BstMWI GCNNNNNNNGC 2 cut(s) 62, 196
BstNI CCWGG 1 cut(s) 12
BstSCI CCNGG 1 cut(s) 10
BstV1I GCAGC 1 cut(s) 202
BstV2I GAAGAC 1 cut(s) 70
BsuI GTATCC 1 cut(s) 412
BsuRI GGCC 1 cut(s) 5
BtgZI GCGATG 1 cut(s) 73
BtsIMutI CAGTG 2 cut(s) 160, 302
Cac8I GCNNGC 2 cut(s) 25, 433
CviAII CATG 2 cut(s) 94, 453
DdeI CTNAG 4 cut(s) 152, 195, 201, 207
DpnI GATC 1 cut(s) 392
DpnII GATC 1 cut(s) 390
DraIII CACNNNGTG 1 cut(s) 155
DrdI GACNNNNNNGTC 1 cut(s) 50
DseDI GACNNNNNNGTC 1 cut(s) 50
EaeI YGGCCR 1 cut(s) 3
EciI GGCGGA 1 cut(s) 7
Eco24I GRGCYC 1 cut(s) 360
Eco57I CTGAAG 1 cut(s) 326
Eco88I CYCGRG 1 cut(s) 82
EcoRII CCWGG 1 cut(s) 10
EcoT38I GRGCYC 1 cut(s) 360
FaeI CATG 2 cut(s) 97, 456
FaiI YATR 5 cut(s) 95, 318, 372, 429, 454
FatI CATG 2 cut(s) 93, 452
Fnu4HI GCNGC 2 cut(s) 21, 191
FriOI GRGCYC 1 cut(s) 360
Fsp4HI GCNGC 2 cut(s) 21, 191
FspBI CTAG 1 cut(s) 363
GluI GCNGC 2 cut(s) 21, 191
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 66
Hin1II CATG 2 cut(s) 97, 456
HincII GTYRAC 1 cut(s) 162
HindII GTYRAC 1 cut(s) 162
HindIII AAGCTT 1 cut(s) 440
HinfI GANTC 2 cut(s) 35, 158
HpaII CCGG 1 cut(s) 66
Hpy166II GTNNAC 1 cut(s) 162
Hpy188III TCNNGA 1 cut(s) 363
Hpy8I GTNNAC 1 cut(s) 162
Hpy99I CGWCG 3 cut(s) 32, 56, 316
HpyCH4III ACNGT 1 cut(s) 407
HpyF10VI GCNNNNNNNGC 2 cut(s) 62, 196
HpyF3I CTNAG 4 cut(s) 152, 195, 201, 207
Hsp92II CATG 2 cut(s) 97, 456
Kzo9I GATC 1 cut(s) 390
LmnI GCTCC 1 cut(s) 20
LpnPI CCDG 6 cut(s) 9, 24, 79, 309, 399, 417
Lsp1109I GCAGC 1 cut(s) 202
LweI GCATC 2 cut(s) 96, 376
MaeI CTAG 1 cut(s) 363
MalI GATC 1 cut(s) 392
MboI GATC 1 cut(s) 390
MboII GAAGA 3 cut(s) 70, 152, 177
MhlI GDGCHC 1 cut(s) 360
MluCI AATT 1 cut(s) 46
MlyI GAGTC 1 cut(s) 167
MnlI CCTC 7 cut(s) 204, 210, 216, 222, 228, 267, 391
MseI TTAA 1 cut(s) 113
MslI CAYNNNNRTG 1 cut(s) 92
MspA1I CMGCKG 2 cut(s) 23, 178
MspI CCGG 1 cut(s) 66
MspR9I CCNGG 1 cut(s) 12
Mva1269I GAATGC 1 cut(s) 99
MvaI CCWGG 1 cut(s) 12
MwoI GCNNNNNNNGC 2 cut(s) 62, 196
NdeII GATC 1 cut(s) 390
NlaIII CATG 2 cut(s) 97, 456
NlaIV GGNNCC 2 cut(s) 16, 246
PctI GAATGC 1 cut(s) 99
PfeI GAWTC 1 cut(s) 35
PkrI GCNGC 2 cut(s) 22, 192
PleI GAGTC 1 cut(s) 166
PpsI GAGTC 1 cut(s) 166
Psp6I CCWGG 1 cut(s) 10
PspGI CCWGG 1 cut(s) 10
PspN4I GGNNCC 2 cut(s) 16, 246
PvuII CAGCTG 1 cut(s) 178
RseI CAYNNNNRTG 1 cut(s) 92
SaqAI TTAA 1 cut(s) 113
SatI GCNGC 2 cut(s) 21, 191
Sau3AI GATC 1 cut(s) 390
SchI GAGTC 1 cut(s) 167
ScrFI CCNGG 1 cut(s) 12
SduI GDGCHC 1 cut(s) 360
SetI ASST 2 cut(s) 180, 444
SfaNI GCATC 2 cut(s) 96, 376
SmiMI CAYNNNNRTG 1 cut(s) 92
SmlI CTYRAG 1 cut(s) 239
SmoI CTYRAG 1 cut(s) 239
Sse9I AATT 1 cut(s) 46
SsiI CCGC 2 cut(s) 18, 21
SspMI CTAG 1 cut(s) 363
StyD4I CCNGG 1 cut(s) 10
TaaI ACNGT 1 cut(s) 407
TasI AATT 1 cut(s) 46
TauI GCSGC 1 cut(s) 23
TfiI GAWTC 1 cut(s) 35
Tru1I TTAA 1 cut(s) 113
Tru9I TTAA 1 cut(s) 113
TscAI CASTG 2 cut(s) 160, 309
TseI GCWGC 1 cut(s) 190
TspDTI ATGAA 1 cut(s) 153
TspGWI ACGGA 1 cut(s) 40
TspRI CASTG 2 cut(s) 160, 309
XbaI TCTAGA 1 cut(s) 362
XspI CTAG 1 cut(s) 363
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.