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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G58100 AT5G58100 |
| fragaria_vesca | FvH4_4g03800 |
| malus_domestica | MD04G1001000.v1.1 |
| prunus_persica | Prupe.1G001000_v2.0.a1 |
| pyrus_communis | pycom04g00160 |
| rosa_chinensis | RchiOBHm_Chr4g0393651 |
| rosa_laevigata | RLG00000009738 |
| rosa_multiflora | Rmu_sc0010124.1_g000004 |
| rosa_roxburghii | Rroxscaffold_5G00338820 |
| rosa_rugosa | Rorug03G0371900.1 |
| rosa_samantha | Rh4AG048400 Rh4BG044800 Rh4CG051800 |
| rosa_wichuraiana | Rw4G003840 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 126, 1876 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1238 |
| AccI | GTMKAC | 1 cut(s) | 2084 |
| AciI | CCGC | 3 cut(s) | 1409, 2279, 2629 |
| AclI | AACGTT | 1 cut(s) | 738 |
| AclWI | GGATC | 6 cut(s) | 12, 121, 1821, 1898, 1911, 1989 |
| AcuI | CTGAAG | 3 cut(s) | 411, 842, 978 |
| AcvI | CACGTG | 2 cut(s) | 443, 1649 |
| AcyI | GRCGYC | 1 cut(s) | 2640 |
| AfaI | GTAC | 8 cut(s) | 317, 917, 983, 1025, 2518, 2576, 2751, 2805 |
| AfeI | AGCGCT | 1 cut(s) | 404 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 455, 1238, 2079 |
| AflIII | ACRYGT | 3 cut(s) | 440, 442, 2752 |
| AjnI | CCWGG | 3 cut(s) | 944, 2201, 2796 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1579, 1611 |
| AleI | CACNNNNGTG | 1 cut(s) | 2239 |
| Alw21I | GWGCWC | 1 cut(s) | 1521 |
| Alw26I | GTCTC | 4 cut(s) | 901, 1690, 2553, 2641 |
| AlwI | GGATC | 6 cut(s) | 12, 121, 1821, 1898, 1911, 1989 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 329, 881, 1075, 1949 |
| Aor51HI | AGCGCT | 1 cut(s) | 404 |
| AoxI | GGCC | 5 cut(s) | 1213, 1389, 1920, 2255, 2822 |
| ApeKI | GCWGC | 6 cut(s) | 132, 1943, 1946, 2230, 2267, 2276 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 1251, 1604, 2605 |
| AspLEI | GCGC | 1 cut(s) | 405 |
| AspS9I | GGNCC | 3 cut(s) | 1214, 1229, 2256 |
| AsuC2I | CCSGG | 1 cut(s) | 237 |
| AsuHPI | GGTGA | 7 cut(s) | 218, 377, 460, 1385, 1547, 1701, 2132 |
| AvaII | GGWCC | 1 cut(s) | 1229 |
| BamHI | GGATCC | 1 cut(s) | 1903 |
| BanII | GRGCYC | 1 cut(s) | 1521 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 183, 215, 1320, 1352 |
| BbrPI | CACGTG | 2 cut(s) | 443, 1649 |
| BbsI | GAAGAC | 5 cut(s) | 11, 23, 29, 139, 966 |
| Bbv12I | GWGCWC | 1 cut(s) | 1521 |
| BbvI | GCAGC | 6 cut(s) | 144, 1955, 1958, 2242, 2254, 2263 |
| BceAI | ACGGC | 2 cut(s) | 1349, 2065 |
| BciT130I | CCWGG | 3 cut(s) | 946, 2203, 2798 |
| BclI | TGATCA | 3 cut(s) | 421, 2044, 2689 |
| BcnI | CCSGG | 1 cut(s) | 237 |
| BcoDI | GTCTC | 4 cut(s) | 901, 1690, 2553, 2641 |
| BfaI | CTAG | 6 cut(s) | 699, 704, 1571, 2090, 2504, 2663 |
| BfmI | CTRYAG | 1 cut(s) | 2706 |
| BfoI | RGCGCY | 1 cut(s) | 406 |
| BfuAI | ACCTGC | 2 cut(s) | 126, 1876 |
| BisI | GCNGC | 7 cut(s) | 133, 1944, 1947, 2231, 2268, 2277, 2280 |
| BlsI | GCNGC | 7 cut(s) | 134, 1945, 1948, 2232, 2269, 2278, 2281 |
| Bme1390I | CCNGG | 4 cut(s) | 237, 946, 2203, 2798 |
| Bme18I | GGWCC | 1 cut(s) | 1229 |
| BmgT120I | GGNCC | 3 cut(s) | 1214, 1229, 2256 |
| BmiI | GGNNCC | 2 cut(s) | 1230, 1905 |
| BmrFI | CCNGG | 4 cut(s) | 237, 946, 2203, 2798 |
| BmrI | ACTGGG | 1 cut(s) | 317 |
| BmsI | GCATC | 5 cut(s) | 643, 934, 988, 1333, 2363 |
| BmuI | ACTGGG | 1 cut(s) | 317 |
| BpiI | GAAGAC | 5 cut(s) | 11, 23, 29, 139, 966 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 450, 482, 1552, 1584 |
| BpmI | CTGGAG | 1 cut(s) | 2640 |
| BpuEI | CTTGAG | 4 cut(s) | 275, 419, 1802, 2382 |
| BpuMI | CCSGG | 1 cut(s) | 237 |
| BsaAI | YACGTR | 3 cut(s) | 203, 443, 1649 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1380 |
| BsaHI | GRCGYC | 1 cut(s) | 2640 |
| BsaI | GGTCTC | 1 cut(s) | 901 |
| BsaJI | CCNNGG | 4 cut(s) | 235, 2116, 2202, 2797 |
| BsaWI | WCCGGW | 1 cut(s) | 789 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 561, 591, 1007, 1037 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 455, 1238, 2079 |
| Bse118I | RCCGGY | 1 cut(s) | 2079 |
| Bse1I | ACTGG | 4 cut(s) | 127, 323, 2360, 2623 |
| Bse3DI | GCAATG | 3 cut(s) | 1444, 1923, 2225 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1380 |
| BseBI | CCWGG | 3 cut(s) | 946, 2203, 2798 |
| BseDI | CCNNGG | 4 cut(s) | 235, 2116, 2202, 2797 |
| BseJI | GATNNNNATC | 1 cut(s) | 1380 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 455, 1238, 2079 |
| BseMI | GCAATG | 3 cut(s) | 1444, 1923, 2225 |
| BseMII | CTCAG | 2 cut(s) | 1874, 2564 |
| BseNI | ACTGG | 4 cut(s) | 127, 323, 2360, 2623 |
| BseRI | GAGGAG | 3 cut(s) | 1637, 1831, 2266 |
| BseXI | GCAGC | 6 cut(s) | 144, 1955, 1958, 2242, 2254, 2263 |
| BsgI | GTGCAG | 4 cut(s) | 1073, 1230, 1317, 2716 |
| BshFI | GGCC | 5 cut(s) | 1215, 1391, 1922, 2257, 2824 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1521 |
| BsiSI | CCGG | 3 cut(s) | 237, 790, 2080 |
| BslFI | GGGAC | 1 cut(s) | 1242 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 455, 1238, 2079 |
| BsmAI | GTCTC | 4 cut(s) | 901, 1690, 2553, 2641 |
| BsmFI | GGGAC | 1 cut(s) | 1242 |
| BsmI | GAATGC | 2 cut(s) | 870, 1160 |
| BsnI | GGCC | 5 cut(s) | 1215, 1391, 1922, 2257, 2824 |
| Bso31I | GGTCTC | 1 cut(s) | 901 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1521 |
| Bsp1407I | TGTACA | 1 cut(s) | 1023 |
| Bsp19I | CCATGG | 1 cut(s) | 2116 |
| BspACI | CCGC | 3 cut(s) | 1409, 2279, 2629 |
| BspANI | GGCC | 5 cut(s) | 1215, 1391, 1922, 2257, 2824 |
| BspCNI | CTCAG | 2 cut(s) | 1873, 2563 |
| BspHI | TCATGA | 1 cut(s) | 1618 |
| BspLI | GGNNCC | 2 cut(s) | 1230, 1905 |
| BspMI | ACCTGC | 2 cut(s) | 126, 1876 |
| BspPI | GGATC | 6 cut(s) | 12, 121, 1821, 1898, 1911, 1989 |
| BspTNI | GGTCTC | 1 cut(s) | 901 |
| BsrDI | GCAATG | 3 cut(s) | 1444, 1923, 2225 |
| BsrFI | RCCGGY | 1 cut(s) | 2079 |
| BsrGI | TGTACA | 1 cut(s) | 1023 |
| BsrI | ACTGG | 4 cut(s) | 127, 323, 2360, 2623 |
| BssAI | RCCGGY | 1 cut(s) | 2079 |
| BssECI | CCNNGG | 4 cut(s) | 235, 2116, 2202, 2797 |
| BssNI | GRCGYC | 1 cut(s) | 2640 |
| BssT1I | CCWWGG | 1 cut(s) | 2116 |
| Bst2UI | CCWGG | 3 cut(s) | 946, 2203, 2798 |
| Bst4CI | ACNGT | 9 cut(s) | 17, 90, 883, 973, 1042, 1071, 1642, 2327, 2614 |
| Bst6I | CTCTTC | 2 cut(s) | 167, 2460 |
| BstACI | GRCGYC | 1 cut(s) | 2640 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1727 |
| BstAUI | TGTACA | 1 cut(s) | 1023 |
| BstBAI | YACGTR | 3 cut(s) | 203, 443, 1649 |
| BstC8I | GCNNGC | 5 cut(s) | 271, 991, 1213, 1470, 2070 |
| BstDEI | CTNAG | 4 cut(s) | 1265, 1860, 2550, 2788 |
| BstDSI | CCRYGG | 1 cut(s) | 2116 |
| BstEII | GGTNACC | 1 cut(s) | 785 |
| BstH2I | RGCGCY | 1 cut(s) | 406 |
| BstHHI | GCGC | 1 cut(s) | 405 |
| BstMAI | GTCTC | 4 cut(s) | 901, 1690, 2553, 2641 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 1574, 1727, 1940, 2273, 2276 |
| BstNI | CCWGG | 3 cut(s) | 946, 2203, 2798 |
| BstNSI | RCATGY | 2 cut(s) | 993, 2756 |
| BstPI | GGTNACC | 1 cut(s) | 785 |
| BstSCI | CCNGG | 4 cut(s) | 235, 944, 2201, 2796 |
| BstSFI | CTRYAG | 1 cut(s) | 2706 |
| BstV1I | GCAGC | 6 cut(s) | 144, 1955, 1958, 2242, 2254, 2263 |
| BstV2I | GAAGAC | 5 cut(s) | 11, 23, 29, 139, 966 |
| BstX2I | RGATCY | 3 cut(s) | 113, 1813, 1903 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 2106, 2241 |
| BstYI | RGATCY | 3 cut(s) | 113, 1813, 1903 |
| BsuRI | GGCC | 5 cut(s) | 1215, 1391, 1922, 2257, 2824 |
| BtgI | CCRYGG | 1 cut(s) | 2116 |
| BtsI | GCAGTG | 1 cut(s) | 2728 |
| BtsIMutI | CAGTG | 7 cut(s) | 120, 330, 963, 1615, 1935, 2478, 2728 |
| BveI | ACCTGC | 2 cut(s) | 126, 1876 |
| Cac8I | GCNNGC | 5 cut(s) | 271, 991, 1213, 1470, 2070 |
| CaiI | CAGNNNCTG | 4 cut(s) | 329, 881, 1075, 1949 |
| CciI | TCATGA | 1 cut(s) | 1618 |
| CfoI | GCGC | 1 cut(s) | 405 |
| Cfr10I | RCCGGY | 1 cut(s) | 2079 |
| Cfr13I | GGNCC | 3 cut(s) | 1214, 1229, 2256 |
| CseI | GACGC | 2 cut(s) | 2648, 2661 |
| Csp6I | GTAC | 8 cut(s) | 316, 916, 982, 1024, 2517, 2575, 2750, 2804 |
| CviQI | GTAC | 8 cut(s) | 316, 916, 982, 1024, 2517, 2575, 2750, 2804 |
| DdeI | CTNAG | 4 cut(s) | 1265, 1860, 2550, 2788 |
| DraI | TTTAAA | 1 cut(s) | 2058 |
| Eam1104I | CTCTTC | 2 cut(s) | 167, 2460 |
| EarI | CTCTTC | 2 cut(s) | 167, 2460 |
| Ecl136II | GAGCTC | 1 cut(s) | 1519 |
| Eco130I | CCWWGG | 1 cut(s) | 2116 |
| Eco24I | GRGCYC | 1 cut(s) | 1521 |
| Eco31I | GGTCTC | 1 cut(s) | 901 |
| Eco32I | GATATC | 3 cut(s) | 713, 1048, 1752 |
| Eco47I | GGWCC | 1 cut(s) | 1229 |
| Eco47III | AGCGCT | 1 cut(s) | 404 |
| Eco53kI | GAGCTC | 1 cut(s) | 1519 |
| Eco57I | CTGAAG | 3 cut(s) | 411, 842, 978 |
| Eco72I | CACGTG | 2 cut(s) | 443, 1649 |
| Eco91I | GGTNACC | 1 cut(s) | 785 |
| EcoICRI | GAGCTC | 1 cut(s) | 1519 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1214 |
| EcoO65I | GGTNACC | 1 cut(s) | 785 |
| EcoRI | GAATTC | 2 cut(s) | 374, 1133 |
| EcoRII | CCWGG | 3 cut(s) | 944, 2201, 2796 |
| EcoRV | GATATC | 3 cut(s) | 713, 1048, 1752 |
| EcoT14I | CCWWGG | 1 cut(s) | 2116 |
| EcoT22I | ATGCAT | 3 cut(s) | 733, 991, 1003 |
| EcoT38I | GRGCYC | 1 cut(s) | 1521 |
| ErhI | CCWWGG | 1 cut(s) | 2116 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1452, 1484, 2052, 2084 |
| FaqI | GGGAC | 1 cut(s) | 1242 |
| FauNDI | CATATG | 1 cut(s) | 631 |
| FbaI | TGATCA | 3 cut(s) | 421, 2044, 2689 |
| FblI | GTMKAC | 1 cut(s) | 2084 |
| Fnu4HI | GCNGC | 7 cut(s) | 133, 1944, 1947, 2231, 2268, 2277, 2280 |
| FriOI | GRGCYC | 1 cut(s) | 1521 |
| Fsp4HI | GCNGC | 7 cut(s) | 133, 1944, 1947, 2231, 2268, 2277, 2280 |
| FspBI | CTAG | 6 cut(s) | 699, 704, 1571, 2090, 2504, 2663 |
| GlaI | GCGC | 1 cut(s) | 404 |
| GluI | GCNGC | 7 cut(s) | 133, 1944, 1947, 2231, 2268, 2277, 2280 |
| GsuI | CTGGAG | 1 cut(s) | 2640 |
| HaeII | RGCGCY | 1 cut(s) | 406 |
| HaeIII | GGCC | 5 cut(s) | 1215, 1391, 1922, 2257, 2824 |
| HapII | CCGG | 3 cut(s) | 237, 790, 2080 |
| HgaI | GACGC | 2 cut(s) | 2648, 2661 |
| HhaI | GCGC | 1 cut(s) | 405 |
| Hin1I | GRCGYC | 1 cut(s) | 2640 |
| Hin6I | GCGC | 1 cut(s) | 403 |
| HinP1I | GCGC | 1 cut(s) | 403 |
| HincII | GTYRAC | 1 cut(s) | 2137 |
| HindII | GTYRAC | 1 cut(s) | 2137 |
| HindIII | AAGCTT | 4 cut(s) | 380, 1100, 1466, 2066 |
| HinfI | GANTC | 9 cut(s) | 224, 308, 626, 751, 764, 806, 1836, 2006, 2468 |
| HpaII | CCGG | 3 cut(s) | 237, 790, 2080 |
| HphI | GGTGA | 7 cut(s) | 218, 377, 460, 1385, 1547, 1701, 2132 |
| Hpy166II | GTNNAC | 9 cut(s) | 334, 411, 676, 2085, 2123, 2137, 2561, 2638, 2804 |
| Hpy8I | GTNNAC | 9 cut(s) | 334, 411, 676, 2085, 2123, 2137, 2561, 2638, 2804 |
| Hpy99I | CGWCG | 1 cut(s) | 45 |
| HpyAV | CCTTC | 8 cut(s) | 1027, 1241, 1449, 1526, 1722, 1866, 2205, 2542 |
| HpyCH4III | ACNGT | 9 cut(s) | 17, 90, 883, 973, 1042, 1071, 1642, 2327, 2614 |
| HpyCH4IV | ACGT | 4 cut(s) | 202, 442, 738, 1648 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 1574, 1727, 1940, 2273, 2276 |
| HpyF3I | CTNAG | 4 cut(s) | 1265, 1860, 2550, 2788 |
| HpySE526I | ACGT | 4 cut(s) | 202, 442, 738, 1648 |
| Hsp92I | GRCGYC | 1 cut(s) | 2640 |
| HspAI | GCGC | 1 cut(s) | 403 |
| Ksp22I | TGATCA | 3 cut(s) | 421, 2044, 2689 |
| LmnI | GCTCC | 4 cut(s) | 1524, 2442, 2512, 2554 |
| Lsp1109I | GCAGC | 6 cut(s) | 144, 1955, 1958, 2242, 2254, 2263 |
| LweI | GCATC | 5 cut(s) | 643, 934, 988, 1333, 2363 |
| MaeI | CTAG | 6 cut(s) | 699, 704, 1571, 2090, 2504, 2663 |
| MaeII | ACGT | 4 cut(s) | 202, 442, 738, 1648 |
| MfeI | CAATTG | 3 cut(s) | 1290, 1802, 2433 |
| MflI | RGATCY | 3 cut(s) | 113, 1813, 1903 |
| MhlI | GDGCHC | 1 cut(s) | 1521 |
| MlyI | GAGTC | 4 cut(s) | 620, 758, 1830, 2477 |
| MmeI | TCCRAC | 2 cut(s) | 688, 2350 |
| Mph1103I | ATGCAT | 3 cut(s) | 733, 991, 1003 |
| MroXI | GAANNNNTTC | 3 cut(s) | 1251, 1604, 2605 |
| MslI | CAYNNNNRTG | 5 cut(s) | 441, 621, 1671, 1740, 2239 |
| MspA1I | CMGCKG | 3 cut(s) | 110, 1235, 1949 |
| MspI | CCGG | 3 cut(s) | 237, 790, 2080 |
| MspR9I | CCNGG | 4 cut(s) | 237, 946, 2203, 2798 |
| MunI | CAATTG | 3 cut(s) | 1290, 1802, 2433 |
| Mva1269I | GAATGC | 2 cut(s) | 870, 1160 |
| MvaI | CCWGG | 3 cut(s) | 946, 2203, 2798 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 1574, 1727, 1940, 2273, 2276 |
| NciI | CCSGG | 1 cut(s) | 237 |
| NcoI | CCATGG | 1 cut(s) | 2116 |
| NdeI | CATATG | 1 cut(s) | 631 |
| NlaIV | GGNNCC | 2 cut(s) | 1230, 1905 |
| NmuCI | GTSAC | 2 cut(s) | 527, 2767 |
| NsiI | ATGCAT | 3 cut(s) | 733, 991, 1003 |
| NspI | RCATGY | 2 cut(s) | 993, 2756 |
| OliI | CACNNNNGTG | 1 cut(s) | 2239 |
| PaeI | GCATGC | 1 cut(s) | 993 |
| PagI | TCATGA | 1 cut(s) | 1618 |
| PciI | ACATGT | 1 cut(s) | 2752 |
| PctI | GAATGC | 2 cut(s) | 870, 1160 |
| PdmI | GAANNNNTTC | 3 cut(s) | 1251, 1604, 2605 |
| PfeI | GAWTC | 5 cut(s) | 224, 308, 751, 806, 2006 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1238 |
| PkrI | GCNGC | 7 cut(s) | 134, 1945, 1948, 2232, 2269, 2278, 2281 |
| PleI | GAGTC | 4 cut(s) | 620, 758, 1830, 2476 |
| PmaCI | CACGTG | 2 cut(s) | 443, 1649 |
| PmlI | CACGTG | 2 cut(s) | 443, 1649 |
| PpsI | GAGTC | 4 cut(s) | 620, 758, 1830, 2476 |
| Ppu21I | YACGTR | 3 cut(s) | 203, 443, 1649 |
| PscI | ACATGT | 1 cut(s) | 2752 |
| Psp124BI | GAGCTC | 1 cut(s) | 1521 |
| Psp1406I | AACGTT | 1 cut(s) | 738 |
| Psp6I | CCWGG | 3 cut(s) | 944, 2201, 2796 |
| PspCI | CACGTG | 2 cut(s) | 443, 1649 |
| PspEI | GGTNACC | 1 cut(s) | 785 |
| PspGI | CCWGG | 3 cut(s) | 944, 2201, 2796 |
| PspN4I | GGNNCC | 2 cut(s) | 1230, 1905 |
| PspPI | GGNCC | 3 cut(s) | 1214, 1229, 2256 |
| PstNI | CAGNNNCTG | 4 cut(s) | 329, 881, 1075, 1949 |
| PsuI | RGATCY | 3 cut(s) | 113, 1813, 1903 |
| PvuII | CAGCTG | 3 cut(s) | 110, 1235, 1949 |
| RsaI | GTAC | 8 cut(s) | 317, 917, 983, 1025, 2518, 2576, 2751, 2805 |
| RsaNI | GTAC | 8 cut(s) | 316, 916, 982, 1024, 2517, 2575, 2750, 2804 |
| RseI | CAYNNNNRTG | 5 cut(s) | 441, 621, 1671, 1740, 2239 |
| SacI | GAGCTC | 1 cut(s) | 1521 |
| SatI | GCNGC | 7 cut(s) | 133, 1944, 1947, 2231, 2268, 2277, 2280 |
| Sau96I | GGNCC | 3 cut(s) | 1214, 1229, 2256 |
| SchI | GAGTC | 4 cut(s) | 620, 758, 1830, 2477 |
| ScrFI | CCNGG | 4 cut(s) | 237, 946, 2203, 2798 |
| SduI | GDGCHC | 1 cut(s) | 1521 |
| SfaNI | GCATC | 5 cut(s) | 643, 934, 988, 1333, 2363 |
| SfcI | CTRYAG | 1 cut(s) | 2706 |
| SinI | GGWCC | 1 cut(s) | 1229 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 441, 621, 1671, 1740, 2239 |
| SmlI | CTYRAG | 4 cut(s) | 290, 398, 1817, 2397 |
| SmoI | CTYRAG | 4 cut(s) | 290, 398, 1817, 2397 |
| SphI | GCATGC | 1 cut(s) | 993 |
| SsiI | CCGC | 3 cut(s) | 1409, 2279, 2629 |
| SspI | AATATT | 2 cut(s) | 277, 2103 |
| SspMI | CTAG | 6 cut(s) | 699, 704, 1571, 2090, 2504, 2663 |
| SstI | GAGCTC | 1 cut(s) | 1521 |
| StyD4I | CCNGG | 4 cut(s) | 235, 944, 2201, 2796 |
| StyI | CCWWGG | 1 cut(s) | 2116 |
| TaaI | ACNGT | 9 cut(s) | 17, 90, 883, 973, 1042, 1071, 1642, 2327, 2614 |
| TaiI | ACGT | 4 cut(s) | 205, 445, 741, 1651 |
| TaqI | TCGA | 2 cut(s) | 584, 1993 |
| TatI | WGTACW | 4 cut(s) | 1023, 2574, 2749, 2803 |
| TauI | GCSGC | 1 cut(s) | 2282 |
| TfiI | GAWTC | 5 cut(s) | 224, 308, 751, 806, 2006 |
| TscAI | CASTG | 7 cut(s) | 127, 330, 970, 1615, 1935, 2478, 2735 |
| TseFI | GTSAC | 2 cut(s) | 527, 2767 |
| TseI | GCWGC | 6 cut(s) | 132, 1943, 1946, 2230, 2267, 2276 |
| Tsp45I | GTSAC | 2 cut(s) | 527, 2767 |
| TspGWI | ACGGA | 1 cut(s) | 1951 |
| TspRI | CASTG | 7 cut(s) | 127, 330, 970, 1615, 1935, 2478, 2735 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1238 |
| VpaK11BI | GGWCC | 1 cut(s) | 1229 |
| XbaI | TCTAGA | 1 cut(s) | 1570 |
| XceI | RCATGY | 2 cut(s) | 993, 2756 |
| XmiI | GTMKAC | 1 cut(s) | 2084 |
| XmnI | GAANNNNTTC | 3 cut(s) | 1251, 1604, 2605 |
| XspI | CTAG | 6 cut(s) | 699, 704, 1571, 2090, 2504, 2663 |
| Zsp2I | ATGCAT | 3 cut(s) | 733, 991, 1003 |