Rroxscaffold_5G00338820

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0015985
Physical Location & Seq
Reverse (-)
7069652 .. 7074559
4908 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00338820.1

Sequence Viewer

Length: 2775 bp
ATGGATCGCCGTCCCCTTCCTCGCCGTCGCCGGCCGTTCTTCATCGCCGCCGTCATCATTTCCAGTCTTCTACTCGTCCTCCTACCTCAATCGGCGTCCGGATCTCCCTCCAGAACTCGCAGACCCACCACCAAGCCCTCATCGGTCTTCTCTCTCTTCAACCTCAAGCAGAAGTCCCGCTTCTGGAGCGAGTCCGTCATCCGCAACGACTTCGACGACCTGGAGTCTCCGGCCGCCGCGAAAACCACCTTCGCCAACTTCACCGCCGCAGGTAACGTCGCAAATTACCTGAAACTCCTTCCGATTGAGTCTATGTACCTGCCGGTCCCCGTGAATTTCATCTTCGTTGGATTCGACGGCAACGGGAACCAGGAGTTCAAGCTTCACCCTGAGGAGCTTGAGCGTGTAGATAAGGAGCAGAGGCATCATCTTCCTCTGGTGAGTCACGTGAAGTACAATCTTTCTGTTCATGCGATTCAAATGGGGGAGAAGGTGACCTCGATTTTGGAGAAGGCTGTGAGTGTTTTGGCTCGAAAAGATGAGGTGAGTGGTGATGGAGATGTTGCTTTGTGGCAAGTAGATGTAGATATGATGGATGTGCTTTTCAGTAGCCTTGTTGGGTATCTTGAGATTGGCAATGCATATAACATTTTCGTGTTGAATCCCAAGCGTGACTCGAAAAGGGTTAAATATGGTTACCGGAGAGGGCTGTCGGATTCGGAAATGAGGTATCTGAAGGTGAATGCGAGTGTGATGCAGAGTAAGATTGTTGAGTCGGCAGGGAGGGTTCCGGATACTGTGGTTGCGCTTGATAAGATTAAGGGTAAGAGGCCTTTGTATGAGAAGCATCCGATGGCAAAGTTTGCGTGGTCTGTGACGGAAGATACTGATACGGTGGAGTGGTACAATGCGTGTGAACAAGCGCTGGACAATGTGGAGAAGTTGTATCAAGGGAAGGAAACTGCGGATGTAATTCAGAACAAAGTCGTACAGTTATTGAATGGGAAGCATGAGGATATGAAGCTTCTTTACAATAAGGGATTGAAATCTGGAGACTTTAGTGATCTTCATGCTGAATGTCTTACAGATACATGGATTGGAAAGGAGAGGTGGGCATTTATTGACTTGAGTGCAGGCCCTTTCTCATGGGGACCAGCTGTTGGTGGGGAAGGTGTGCGGACAGAACAAAGTATTCCCAATGTACAAAAAACAATTGGTGCAGTTTCAGAAATTACAGAGGATGAAGCTGAAGATCGCTTGCAAGATGCTATTCAGGAAAAGTTTGCAGTATTTGGTGATAAAGATCATCAGGCTATTGATATTCTTCTAGCAGAGATTGATATATATGAGCTTTTTGCTTTCAAACATTGCAAAGGAAGGAAAGTAAAGCTTGCGCTTTGTGAAGAACTTGATGAGAGAATGAGGGATTTGAAGAATGAGCTCCAATCATTTGAAGGTGAAGAATATGATGATAGTCATAAGAAAAAGGCTGTAGATGCATTAAAGCGAATGGAGAATTGGAATTTGTTTAGTGATACTCAGGAGGAATTTCAGAGTTACACAGTTGCACGTGATACTTTTCTTTCGCATTTAGGTGCAACATTGTGGGGGTCTATGAGACACATTATATCACCTTCTGTAGCAGATGGTGCATTCCATCATTATGATACAATATCGTTTCAGTTGTTTTTCATCACACAGGAGAAAGTTAGACATATTAAACAATTGCCTGTTGATCTCAAGGCTCTCCAGCACGGACTCTCCTCATTGTTGTTACCATCTCAGACACCCGCTTTCAGTCAGCATATGCTACCACTTTCTGAGGATCCTGCTTTGGCAATGGCCTTTTCGGTGGCACGAAGAGCAGCAGCTGTCCCACTATTGCTTGTTAATGGAACTTACAGGAAAACTGTTCGTGCCTATCTTGATTCCTCCATTGTCCAGTATCAGTTGCAGAGACTGAATGATCAAGGCTCTTTAAAAGGGAAGCTTGCCCACAGCCGATCTACACTGGAAGTTCCAATCTTTTGGTTCATCCATGGTGAACCGTTGTTAGTTGACAAGCATTATCAGGCAAAGGCTCTTTCTGATATGGTTATTGTTGTTCAGTCAGATTCTTCATCATGGGAAAGCCACTTGCAGTGTAATGGGCAGCCACTTTTCTGGGATTTGAGGAGGCCCATAAAAGCTGCATTGGCTGCTGCTTCTGAACATCTTGCTGGTTTGCTACCCCTTCATTTAGCTTACAGTCATGCCCGTGAAACTGCAATTGAGGACTGGATGTGGTCAGTTGGGTGCAACCCTCATTCCATTACTTCTCAAGGCTGGACCCTTTCACAATTTCAGTCTGATACAATTGCTCGGAGCTATATCATCACAACTCTAGACGAGTCAATACAGATTGTCAATTCAGCCATTCATCTTCTAGGCTTGGAGCGTACAACCGAAAAAACCTTTCAACTTGTTCTGTCCGAAGAGCGGGATCTACTTAACAAGTACAACTATGTTGTCAGTCTGTGGAAAAGGATTTCCACTACTACTGGAGAATTGCGATATGCAGATGCCATGAGAATGCTACATACCCTAGAGGATGCATCAAAACAGTTTGTTGATCAAGTAAATGCAACTATAGCCAATCTCCACCCAATCCACTGTACAAAAGAGAGGAGAGTACATGTGGAGTATAATTTGTCTACAATTCCAGCTTTCTTGGTTGTCCTGGGTGTTCTCTATCTTGTGTTAAGGCCGAGACGACCAAAGCCAAAAGTTAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

924

Amino Acids

104.68

Weight (kDa)

6.54

Isoelectric Point (pI)

44.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7906 PF25483 321 - 406 6.4e-13 Domain of unknown function (DUF7906)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015985)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G58100 AT5G58100
fragaria_vesca FvH4_4g03800
malus_domestica MD04G1001000.v1.1
prunus_persica Prupe.1G001000_v2.0.a1
pyrus_communis pycom04g00160
rosa_chinensis RchiOBHm_Chr4g0393651
rosa_laevigata RLG00000009738
rosa_multiflora Rmu_sc0010124.1_g000004
rosa_roxburghii Rroxscaffold_5G00338820
rosa_rugosa Rorug03G0371900.1
rosa_samantha Rh4AG048400 Rh4BG044800 Rh4CG051800
rosa_wichuraiana Rw4G003840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 260, 327
AccB7I CCANNNNNTGG 1 cut(s) 1160
AccBSI CCGCTC 1 cut(s) 2479
AccI GTMKAC 1 cut(s) 2693
AccII CGCG 1 cut(s) 239
AccIII TCCGGA 2 cut(s) 98, 790
AclWI GGATC 5 cut(s) 12, 109, 1820, 1833, 2490
AcoI YGGCCR 2 cut(s) 32, 231
AcsI RAATTY 3 cut(s) 334, 1522, 1547
AcuI CTGAAG 2 cut(s) 755, 1269
AcvI CACGTG 2 cut(s) 448, 1571
AcyI GRCGYC 1 cut(s) 95
AfaI GTAC 9 cut(s) 317, 455, 905, 990, 1203, 2440, 2498, 2656, 2673
AfeI AGCGCT 1 cut(s) 924
AfiI CCNNNNNNNGG 3 cut(s) 183, 1160, 2478
AflIII ACRYGT 1 cut(s) 2674
AhdI GACNNNNNGTC 1 cut(s) 223
AjnI CCWGG 3 cut(s) 219, 369, 2718
AjuI GAANNNNNNNTTGG 2 cut(s) 1501, 1533
Alw21I GWGCWC 1 cut(s) 1443
Alw26I GTCTC 5 cut(s) 231, 1047, 1612, 1951, 2743
AlwI GGATC 5 cut(s) 12, 109, 1820, 1833, 2490
AlwNI CAGNNNCTG 2 cut(s) 1871, 1960
Aor13HI TCCGGA 2 cut(s) 98, 790
Aor51HI AGCGCT 1 cut(s) 924
AoxI GGCC 7 cut(s) 32, 231, 830, 1135, 1842, 2177, 2744
ApeKI GCWGC 6 cut(s) 1865, 1868, 2152, 2189, 2198, 2201
ApoI RAATTY 3 cut(s) 334, 1522, 1547
ArsI GACNNNNNNTTYG 2 cut(s) 487, 519
AspLEI GCGC 3 cut(s) 808, 925, 1396
AspS9I GGNCC 5 cut(s) 325, 1136, 1151, 2178, 2328
AvaII GGWCC 3 cut(s) 325, 1151, 2328
AxyI CCTNAGG 1 cut(s) 390
BaeI ACNNNNGTAYC 2 cut(s) 786, 819
BamHI GGATCC 1 cut(s) 1825
BanII GRGCYC 1 cut(s) 1443
BarI GAAGNNNNNNTAC 2 cut(s) 1013, 1045
BbrPI CACGTG 2 cut(s) 448, 1571
BbsI GAAGAC 2 cut(s) 59, 139
Bbv12I GWGCWC 1 cut(s) 1443
BbvI GCAGC 6 cut(s) 1877, 1880, 2164, 2176, 2185, 2188
BccI CCATC 6 cut(s) 548, 586, 847, 1640, 1665, 1786
BceAI ACGGC 4 cut(s) 9, 19, 35, 373
BcgI CGANNNNNNTGC 4 cut(s) 193, 227, 736, 770
BciT130I CCWGG 3 cut(s) 221, 371, 2720
BciVI GTATCC 1 cut(s) 787
BclI TGATCA 2 cut(s) 1966, 2611
BcoDI GTCTC 5 cut(s) 231, 1047, 1612, 1951, 2743
BfaI CTAG 4 cut(s) 1328, 2384, 2426, 2585
BfmI CTRYAG 3 cut(s) 1491, 1638, 2628
BfoI RGCGCY 1 cut(s) 926
BfuAI ACCTGC 2 cut(s) 260, 327
BfuI GTATCC 1 cut(s) 787
Bme1390I CCNGG 3 cut(s) 221, 371, 2720
Bme18I GGWCC 3 cut(s) 325, 1151, 2328
BmeRI GACNNNNNGTC 1 cut(s) 223
BmgT120I GGNCC 5 cut(s) 325, 1136, 1151, 2178, 2328
BmiI GGNNCC 6 cut(s) 327, 368, 789, 1152, 1827, 2330
BmrFI CCNGG 3 cut(s) 221, 371, 2720
BmsI GCATC 8 cut(s) 433, 744, 856, 1255, 1486, 2551, 2581, 2603
BpiI GAAGAC 2 cut(s) 59, 139
BpmI CTGGAG 6 cut(s) 94, 205, 242, 1071, 1733, 2562
BpuEI CTTGAG 6 cut(s) 149, 419, 647, 1147, 1724, 2304
BsaAI YACGTR 2 cut(s) 448, 1571
BsaBI GATNNNNATC 2 cut(s) 1045, 1302
BsaHI GRCGYC 1 cut(s) 95
BsaJI CCNNGG 2 cut(s) 2038, 2719
BsaWI WCCGGW 3 cut(s) 98, 699, 790
BsaXI ACNNNNNCTCC 6 cut(s) 63, 93, 929, 959, 1745, 1775
Bsc4I CCNNNNNNNGG 3 cut(s) 183, 1160, 2478
Bse118I RCCGGY 2 cut(s) 30, 322
Bse1I ACTGG 5 cut(s) 63, 1942, 2016, 2282, 2545
Bse21I CCTNAGG 1 cut(s) 390
Bse3DI GCAATG 3 cut(s) 643, 1366, 1845
Bse8I GATNNNNATC 2 cut(s) 1045, 1302
BseAI TCCGGA 2 cut(s) 98, 790
BseBI CCWGG 3 cut(s) 221, 371, 2720
BseDI CCNNGG 2 cut(s) 2038, 2719
BseGI GGATG 8 cut(s) 198, 601, 847, 973, 1246, 2034, 2286, 2596
BseJI GATNNNNATC 2 cut(s) 1045, 1302
BseLI CCNNNNNNNGG 3 cut(s) 183, 1160, 2478
BseMI GCAATG 3 cut(s) 643, 1366, 1845
BseMII CTCAG 4 cut(s) 381, 1553, 1796, 1812
BseNI ACTGG 5 cut(s) 63, 1942, 2016, 2282, 2545
BseRI GAGGAG 4 cut(s) 407, 1753, 2188, 2680
BseX3I CGGCCG 2 cut(s) 32, 231
BseXI GCAGC 6 cut(s) 1877, 1880, 2164, 2176, 2185, 2188
BsgI GTGCAG 2 cut(s) 1152, 1239
Bsh1236I CGCG 1 cut(s) 239
Bsh1285I CGRYCG 2 cut(s) 35, 234
BshFI GGCC 7 cut(s) 34, 233, 832, 1137, 1844, 2179, 2746
BsiEI CGRYCG 2 cut(s) 35, 234
BsiHKAI GWGCWC 1 cut(s) 1443
BsiSI CCGG 6 cut(s) 31, 99, 230, 323, 700, 791
BslFI GGGAC 4 cut(s) 160, 311, 1164, 1859
BslI CCNNNNNNNGG 3 cut(s) 183, 1160, 2478
BsmAI GTCTC 5 cut(s) 231, 1047, 1612, 1951, 2743
BsmBI CGTCTC 1 cut(s) 2743
BsmFI GGGAC 4 cut(s) 160, 311, 1164, 1859
BsmI GAATGC 3 cut(s) 748, 1652, 2577
BsnI GGCC 7 cut(s) 34, 233, 832, 1137, 1844, 2179, 2746
Bsp1286I GDGCHC 1 cut(s) 1443
Bsp13I TCCGGA 2 cut(s) 98, 790
Bsp1407I TGTACA 2 cut(s) 1201, 2654
Bsp19I CCATGG 1 cut(s) 2038
BspANI GGCC 7 cut(s) 34, 233, 832, 1137, 1844, 2179, 2746
BspCNI CTCAG 4 cut(s) 382, 1552, 1795, 1813
BspEI TCCGGA 2 cut(s) 98, 790
BspFNI CGCG 1 cut(s) 239
BspLI GGNNCC 6 cut(s) 327, 368, 789, 1152, 1827, 2330
BspMI ACCTGC 2 cut(s) 260, 327
BspPI GGATC 5 cut(s) 12, 109, 1820, 1833, 2490
BspQI GCTCTTC 2 cut(s) 1855, 2469
BsrBI CCGCTC 1 cut(s) 2479
BsrDI GCAATG 3 cut(s) 643, 1366, 1845
BsrFI RCCGGY 2 cut(s) 30, 322
BsrGI TGTACA 2 cut(s) 1201, 2654
BsrI ACTGG 5 cut(s) 63, 1942, 2016, 2282, 2545
BssAI RCCGGY 2 cut(s) 30, 322
BssECI CCNNGG 2 cut(s) 2038, 2719
BssNI GRCGYC 1 cut(s) 95
BssT1I CCWWGG 1 cut(s) 2038
Bst2UI CCWGG 3 cut(s) 221, 371, 2720
Bst4CI ACNGT 9 cut(s) 799, 895, 993, 1564, 1912, 2049, 2249, 2604, 2654
Bst6I CTCTTC 3 cut(s) 161, 1855, 2469
BstACI GRCGYC 1 cut(s) 95
BstAPI GCANNNNNTGC 3 cut(s) 863, 1649, 2198
BstAUI TGTACA 2 cut(s) 1201, 2654
BstBAI YACGTR 2 cut(s) 448, 1571
BstC8I GCNNGC 5 cut(s) 32, 1135, 1259, 1392, 1992
BstDEI CTNAG 4 cut(s) 390, 1539, 1782, 1821
BstDSI CCRYGG 1 cut(s) 2038
BstEII GGTNACC 2 cut(s) 493, 695
BstF5I GGATG 8 cut(s) 198, 601, 847, 973, 1246, 2034, 2286, 2596
BstFNI CGCG 1 cut(s) 239
BstH2I RGCGCY 1 cut(s) 926
BstHHI GCGC 3 cut(s) 808, 925, 1396
BstMAI GTCTC 5 cut(s) 231, 1047, 1612, 1951, 2743
BstMCI CGRYCG 2 cut(s) 35, 234
BstMWI GCNNNNNNNGC 8 cut(s) 186, 863, 1496, 1649, 1862, 2195, 2198, 2630
BstNI CCWGG 3 cut(s) 221, 371, 2720
BstNSI RCATGY 1 cut(s) 2678
BstPI GGTNACC 2 cut(s) 493, 695
BstSCI CCNGG 3 cut(s) 219, 369, 2718
BstSFI CTRYAG 3 cut(s) 1491, 1638, 2628
BstUI CGCG 1 cut(s) 239
BstV1I GCAGC 6 cut(s) 1877, 1880, 2164, 2176, 2185, 2188
BstV2I GAAGAC 2 cut(s) 59, 139
BstX2I RGATCY 3 cut(s) 101, 1825, 2482
BstXI CCANNNNNNTGG 2 cut(s) 2028, 2163
BstYI RGATCY 3 cut(s) 101, 1825, 2482
BstZI CGGCCG 2 cut(s) 32, 231
Bsu36I CCTNAGG 1 cut(s) 390
BsuI GTATCC 1 cut(s) 787
BsuRI GGCC 7 cut(s) 34, 233, 832, 1137, 1844, 2179, 2746
BtgI CCRYGG 1 cut(s) 2038
BtgZI GCGATG 1 cut(s) 28
BtsCI GGATG 8 cut(s) 198, 601, 847, 973, 1246, 2034, 2286, 2596
BtsI GCAGTG 1 cut(s) 2147
BtsIMutI CAGTG 3 cut(s) 2009, 2147, 2650
BveI ACCTGC 2 cut(s) 260, 327
Cac8I GCNNGC 5 cut(s) 32, 1135, 1259, 1392, 1992
CaiI CAGNNNCTG 2 cut(s) 1871, 1960
CfoI GCGC 3 cut(s) 808, 925, 1396
Cfr10I RCCGGY 2 cut(s) 30, 322
Cfr13I GGNCC 5 cut(s) 325, 1136, 1151, 2178, 2328
CseI GACGC 1 cut(s) 84
Csp6I GTAC 9 cut(s) 316, 454, 904, 989, 1202, 2439, 2497, 2655, 2672
CviQI GTAC 9 cut(s) 316, 454, 904, 989, 1202, 2439, 2497, 2655, 2672
DdeI CTNAG 4 cut(s) 390, 1539, 1782, 1821
DraI TTTAAA 1 cut(s) 1980
DriI GACNNNNNGTC 1 cut(s) 223
EaeI YGGCCR 2 cut(s) 32, 231
EagI CGGCCG 2 cut(s) 32, 231
Eam1104I CTCTTC 3 cut(s) 161, 1855, 2469
Eam1105I GACNNNNNGTC 1 cut(s) 223
EarI CTCTTC 3 cut(s) 161, 1855, 2469
Ecl136II GAGCTC 1 cut(s) 1441
EclXI CGGCCG 2 cut(s) 32, 231
Eco130I CCWWGG 1 cut(s) 2038
Eco147I AGGCCT 1 cut(s) 832
Eco24I GRGCYC 1 cut(s) 1443
Eco47I GGWCC 3 cut(s) 325, 1151, 2328
Eco47III AGCGCT 1 cut(s) 924
Eco52I CGGCCG 2 cut(s) 32, 231
Eco53kI GAGCTC 1 cut(s) 1441
Eco57I CTGAAG 2 cut(s) 755, 1269
Eco72I CACGTG 2 cut(s) 448, 1571
Eco81I CCTNAGG 1 cut(s) 390
Eco91I GGTNACC 2 cut(s) 493, 695
EcoICRI GAGCTC 1 cut(s) 1441
EcoO109I RGGNCCY 1 cut(s) 1136
EcoO65I GGTNACC 2 cut(s) 493, 695
EcoRII CCWGG 3 cut(s) 219, 369, 2718
EcoT14I CCWWGG 1 cut(s) 2038
EcoT22I ATGCAT 3 cut(s) 643, 1501, 2596
EcoT38I GRGCYC 1 cut(s) 1443
ErhI CCWWGG 1 cut(s) 2038
Esp3I CGTCTC 1 cut(s) 2743
FalI AAGNNNNNCTT 6 cut(s) 164, 196, 1374, 1406, 1974, 2006
FaqI GGGAC 4 cut(s) 160, 311, 1164, 1859
FauI CCCGC 3 cut(s) 185, 1798, 2472
FauNDI CATATG 1 cut(s) 1806
FbaI TGATCA 2 cut(s) 1966, 2611
FblI GTMKAC 1 cut(s) 2693
FokI GGATG 8 cut(s) 185, 608, 834, 980, 1253, 2021, 2293, 2603
FriOI GRGCYC 1 cut(s) 1443
FspBI CTAG 4 cut(s) 1328, 2384, 2426, 2585
GlaI GCGC 3 cut(s) 807, 924, 1395
GsuI CTGGAG 6 cut(s) 94, 205, 242, 1071, 1733, 2562
HaeII RGCGCY 1 cut(s) 926
HaeIII GGCC 7 cut(s) 34, 233, 832, 1137, 1844, 2179, 2746
HapII CCGG 6 cut(s) 31, 99, 230, 323, 700, 791
HgaI GACGC 1 cut(s) 84
HhaI GCGC 3 cut(s) 808, 925, 1396
Hin1I GRCGYC 1 cut(s) 95
Hin6I GCGC 3 cut(s) 806, 923, 1394
HinP1I GCGC 3 cut(s) 806, 923, 1394
HincII GTYRAC 2 cut(s) 2059, 2770
HindII GTYRAC 2 cut(s) 2059, 2770
HindIII AAGCTT 4 cut(s) 380, 1022, 1388, 1988
HpaI GTTAAC 1 cut(s) 2770
HpaII CCGG 6 cut(s) 31, 99, 230, 323, 700, 791
Hpy166II GTNNAC 5 cut(s) 917, 2045, 2059, 2694, 2770
Hpy8I GTNNAC 5 cut(s) 917, 2045, 2059, 2694, 2770
Hpy99I CGWCG 4 cut(s) 30, 218, 281, 359
HpyCH4III ACNGT 9 cut(s) 799, 895, 993, 1564, 1912, 2049, 2249, 2604, 2654
HpyCH4IV ACGT 3 cut(s) 276, 447, 1570
HpyF10VI GCNNNNNNNGC 8 cut(s) 186, 863, 1496, 1649, 1862, 2195, 2198, 2630
HpyF3I CTNAG 4 cut(s) 390, 1539, 1782, 1821
HpySE526I ACGT 3 cut(s) 276, 447, 1570
Hsp92I GRCGYC 1 cut(s) 95
HspAI GCGC 3 cut(s) 806, 923, 1394
Kpn2I TCCGGA 2 cut(s) 98, 790
KroI GCCGGC 1 cut(s) 30
KroNI GCCGGC 1 cut(s) 32
Ksp22I TGATCA 2 cut(s) 1966, 2611
KspAI GTTAAC 1 cut(s) 2770
LguI GCTCTTC 2 cut(s) 1855, 2469
LmnI GCTCC 6 cut(s) 186, 394, 415, 1446, 2364, 2434
Lsp1109I GCAGC 6 cut(s) 1877, 1880, 2164, 2176, 2185, 2188
LweI GCATC 8 cut(s) 433, 744, 856, 1255, 1486, 2551, 2581, 2603
MaeI CTAG 4 cut(s) 1328, 2384, 2426, 2585
MaeII ACGT 3 cut(s) 276, 447, 1570
MaeIII GTNAC 8 cut(s) 272, 443, 493, 671, 695, 874, 1556, 1773
MbiI CCGCTC 1 cut(s) 2479
MfeI CAATTG 4 cut(s) 1212, 1724, 2268, 2355
MflI RGATCY 3 cut(s) 101, 1825, 2482
MhlI GDGCHC 1 cut(s) 1443
MlyI GAGTC 8 cut(s) 200, 233, 317, 451, 668, 782, 1752, 2399
MmeI TCCRAC 2 cut(s) 328, 693
Mph1103I ATGCAT 3 cut(s) 643, 1501, 2596
MroI TCCGGA 2 cut(s) 98, 790
MroNI GCCGGC 1 cut(s) 30
MseI TTAA 9 cut(s) 687, 819, 1502, 1719, 1890, 1979, 2490, 2741, 2769
MslI CAYNNNNRTG 5 cut(s) 653, 1593, 1662, 2256, 2570
MspA1I CMGCKG 2 cut(s) 1157, 1871
MspI CCGG 6 cut(s) 31, 99, 230, 323, 700, 791
MspR9I CCNGG 3 cut(s) 221, 371, 2720
MunI CAATTG 4 cut(s) 1212, 1724, 2268, 2355
Mva1269I GAATGC 3 cut(s) 748, 1652, 2577
MvaI CCWGG 3 cut(s) 221, 371, 2720
MvnI CGCG 1 cut(s) 239
MwoI GCNNNNNNNGC 8 cut(s) 186, 863, 1496, 1649, 1862, 2195, 2198, 2630
NaeI GCCGGC 1 cut(s) 32
NcoI CCATGG 1 cut(s) 2038
NdeI CATATG 1 cut(s) 1806
NgoMIV GCCGGC 1 cut(s) 30
NlaIV GGNNCC 6 cut(s) 327, 368, 789, 1152, 1827, 2330
NmeAIII GCCGAG 1 cut(s) 2772
NmuCI GTSAC 4 cut(s) 443, 493, 671, 874
NsiI ATGCAT 3 cut(s) 643, 1501, 2596
NspI RCATGY 1 cut(s) 2678
PceI AGGCCT 1 cut(s) 832
PciI ACATGT 1 cut(s) 2674
PciSI GCTCTTC 2 cut(s) 1855, 2469
PcsI WCGNNNNNNNCGW 2 cut(s) 213, 351
PctI GAATGC 3 cut(s) 748, 1652, 2577
PdiI GCCGGC 1 cut(s) 32
PfeI GAWTC 6 cut(s) 351, 475, 661, 716, 1928, 2114
PflMI CCANNNNNTGG 1 cut(s) 1160
PleI GAGTC 8 cut(s) 199, 232, 316, 450, 668, 781, 1752, 2398
PmaCI CACGTG 2 cut(s) 448, 1571
PmlI CACGTG 2 cut(s) 448, 1571
PpsI GAGTC 8 cut(s) 199, 232, 316, 450, 668, 781, 1752, 2398
Ppu21I YACGTR 2 cut(s) 448, 1571
PscI ACATGT 1 cut(s) 2674
Psp124BI GAGCTC 1 cut(s) 1443
Psp6I CCWGG 3 cut(s) 219, 369, 2718
PspCI CACGTG 2 cut(s) 448, 1571
PspEI GGTNACC 2 cut(s) 493, 695
PspGI CCWGG 3 cut(s) 219, 369, 2718
PspN4I GGNNCC 6 cut(s) 327, 368, 789, 1152, 1827, 2330
PspPI GGNCC 5 cut(s) 325, 1136, 1151, 2178, 2328
PstNI CAGNNNCTG 2 cut(s) 1871, 1960
PsuI RGATCY 3 cut(s) 101, 1825, 2482
PvuII CAGCTG 2 cut(s) 1157, 1871
RsaI GTAC 9 cut(s) 317, 455, 905, 990, 1203, 2440, 2498, 2656, 2673
RsaNI GTAC 9 cut(s) 316, 454, 904, 989, 1202, 2439, 2497, 2655, 2672
RseI CAYNNNNRTG 5 cut(s) 653, 1593, 1662, 2256, 2570
SacI GAGCTC 1 cut(s) 1443
SapI GCTCTTC 2 cut(s) 1855, 2469
SaqAI TTAA 9 cut(s) 687, 819, 1502, 1719, 1890, 1979, 2490, 2741, 2769
Sau96I GGNCC 5 cut(s) 325, 1136, 1151, 2178, 2328
SchI GAGTC 8 cut(s) 200, 233, 317, 451, 668, 782, 1752, 2399
ScrFI CCNGG 3 cut(s) 221, 371, 2720
SduI GDGCHC 1 cut(s) 1443
SfaNI GCATC 8 cut(s) 433, 744, 856, 1255, 1486, 2551, 2581, 2603
SfcI CTRYAG 3 cut(s) 1491, 1638, 2628
SinI GGWCC 3 cut(s) 325, 1151, 2328
SmiMI CAYNNNNRTG 5 cut(s) 653, 1593, 1662, 2256, 2570
SmlI CTYRAG 6 cut(s) 164, 398, 626, 1126, 1739, 2319
SmoI CTYRAG 6 cut(s) 164, 398, 626, 1126, 1739, 2319
SseBI AGGCCT 1 cut(s) 832
SspMI CTAG 4 cut(s) 1328, 2384, 2426, 2585
SstI GAGCTC 1 cut(s) 1443
StuI AGGCCT 1 cut(s) 832
StyD4I CCNGG 3 cut(s) 219, 369, 2718
StyI CCWWGG 1 cut(s) 2038
TaaI ACNGT 9 cut(s) 799, 895, 993, 1564, 1912, 2049, 2249, 2604, 2654
TaiI ACGT 3 cut(s) 279, 450, 1573
TaqI TCGA 5 cut(s) 213, 354, 500, 532, 677
TaqII GACCGA 1 cut(s) 133
TatI WGTACW 5 cut(s) 453, 1201, 2496, 2654, 2671
TauI GCSGC 4 cut(s) 50, 236, 239, 269
TfiI GAWTC 6 cut(s) 351, 475, 661, 716, 1928, 2114
Tru1I TTAA 9 cut(s) 687, 819, 1502, 1719, 1890, 1979, 2490, 2741, 2769
Tru9I TTAA 9 cut(s) 687, 819, 1502, 1719, 1890, 1979, 2490, 2741, 2769
TscAI CASTG 3 cut(s) 2016, 2147, 2657
TseFI GTSAC 4 cut(s) 443, 493, 671, 874
TseI GCWGC 6 cut(s) 1865, 1868, 2152, 2189, 2198, 2201
Tsp45I GTSAC 4 cut(s) 443, 493, 671, 874
TspGWI ACGGA 3 cut(s) 184, 893, 1770
TspRI CASTG 3 cut(s) 2016, 2147, 2657
Van91I CCANNNNNTGG 1 cut(s) 1160
VpaK11BI GGWCC 3 cut(s) 325, 1151, 2328
XapI RAATTY 3 cut(s) 334, 1522, 1547
XbaI TCTAGA 1 cut(s) 2383
XceI RCATGY 1 cut(s) 2678
XmiI GTMKAC 1 cut(s) 2693
XspI CTAG 4 cut(s) 1328, 2384, 2426, 2585
Zsp2I ATGCAT 3 cut(s) 643, 1501, 2596
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.