Prupe.1G068700_v2.0.a1

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0019173
Physical Location & Seq
Forward (+)
4892672 .. 4893912
1241 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G068700.1

Sequence Viewer

Length: 279 bp
ATGCCTTGGGGAGAGGAATCAAAAGGATCAAATGCAGTTGCAAGGTCCAGCTTTTTCACTACTTTTGATCATCATCATCATCATCATCATGATGTTGGAAAGAGGATGAAGAGCTCATCATCAAATGGAAGAGTGCCAGAAGCAGCAAATTTCAGCCAGTACTGCAAGTCAAAGGGGCACCAGTTTTATGATTATTTTTTTCACTCTAACTCTAAGAACACCACCTCAGAAAACAAAAGGGTTGTTCCCACTGGTCCCAATCCCTTACATAACAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RVT

Protein Analysis

93

Amino Acids

10.53

Weight (kDa)

9.66

Isoelectric Point (pI)

51.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019173)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24225
fragaria_vesca FvH4_4g06620
prunus_persica Prupe.1G068700_v2.0.a1
pyrus_communis pycom16g20270
rosa_chinensis RchiOBHm_Chr4g0398531
rosa_laevigata RLG00000009347
rosa_rugosa Rorug04G0008900
rosa_samantha Rh4DG078500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 177
AclWI GGATC 1 cut(s) 34
AcsI RAATTY 1 cut(s) 148
AfaI GTAC 1 cut(s) 161
AluBI AGCT 2 cut(s) 51, 114
AluI AGCT 2 cut(s) 51, 114
Alw21I GWGCWC 1 cut(s) 116
AlwI GGATC 1 cut(s) 34
ApeKI GCWGC 1 cut(s) 143
ApoI RAATTY 1 cut(s) 148
AspS9I GGNCC 2 cut(s) 45, 254
AvaII GGWCC 2 cut(s) 45, 254
BaeGI GKGCMC 1 cut(s) 180
BanI GGYRCC 1 cut(s) 177
BanII GRGCYC 1 cut(s) 116
Bbv12I GWGCWC 1 cut(s) 116
BbvI GCAGC 1 cut(s) 155
BclI TGATCA 1 cut(s) 67
BisI GCNGC 1 cut(s) 144
BlsI GCNGC 1 cut(s) 145
BmcAI AGTACT 1 cut(s) 161
Bme18I GGWCC 2 cut(s) 45, 254
BmgT120I GGNCC 2 cut(s) 45, 254
BmiI GGNNCC 2 cut(s) 179, 256
BsaBI GATNNNNATC 1 cut(s) 72
BsaJI CCNNGG 1 cut(s) 5
Bse1I ACTGG 3 cut(s) 157, 181, 256
Bse8I GATNNNNATC 1 cut(s) 72
BseDI CCNNGG 1 cut(s) 5
BseGI GGATG 1 cut(s) 111
BseJI GATNNNNATC 1 cut(s) 72
BseMII CTCAG 1 cut(s) 240
BseNI ACTGG 3 cut(s) 157, 181, 256
BseSI GKGCMC 1 cut(s) 180
BseXI GCAGC 1 cut(s) 155
BshNI GGYRCC 1 cut(s) 177
BsiHKAI GWGCWC 1 cut(s) 116
BslFI GGGAC 1 cut(s) 240
BsmFI GGGAC 1 cut(s) 240
Bsp1286I GDGCHC 2 cut(s) 116, 180
Bsp143I GATC 2 cut(s) 26, 67
BspCNI CTCAG 1 cut(s) 239
BspHI TCATGA 1 cut(s) 88
BspLI GGNNCC 2 cut(s) 179, 256
BspPI GGATC 1 cut(s) 34
BspQI GCTCTTC 1 cut(s) 104
BspT107I GGYRCC 1 cut(s) 177
BsrI ACTGG 3 cut(s) 157, 181, 256
BssECI CCNNGG 1 cut(s) 5
BssMI GATC 2 cut(s) 26, 67
BssT1I CCWWGG 1 cut(s) 5
Bst6I CTCTTC 2 cut(s) 104, 124
BstDEI CTNAG 2 cut(s) 213, 226
BstF5I GGATG 1 cut(s) 111
BstKTI GATC 2 cut(s) 29, 70
BstMBI GATC 2 cut(s) 26, 67
BstMWI GCNNNNNNNGC 1 cut(s) 162
BstSLI GKGCMC 1 cut(s) 180
BstV1I GCAGC 1 cut(s) 155
BtsCI GGATG 1 cut(s) 111
BtsIMutI CAGTG 1 cut(s) 249
CciI TCATGA 1 cut(s) 88
Cfr13I GGNCC 2 cut(s) 45, 254
Csp6I GTAC 1 cut(s) 160
CviAII CATG 1 cut(s) 89
CviJI RGCY 3 cut(s) 51, 114, 156
CviKI_1 RGCY 3 cut(s) 51, 114, 156
CviQI GTAC 1 cut(s) 160
DdeI CTNAG 2 cut(s) 213, 226
DpnI GATC 2 cut(s) 28, 69
DpnII GATC 2 cut(s) 26, 67
Eam1104I CTCTTC 2 cut(s) 104, 124
EarI CTCTTC 2 cut(s) 104, 124
Ecl136II GAGCTC 1 cut(s) 114
Eco130I CCWWGG 1 cut(s) 5
Eco24I GRGCYC 1 cut(s) 116
Eco47I GGWCC 2 cut(s) 45, 254
Eco53kI GAGCTC 1 cut(s) 114
EcoICRI GAGCTC 1 cut(s) 114
EcoT14I CCWWGG 1 cut(s) 5
EcoT38I GRGCYC 1 cut(s) 116
ErhI CCWWGG 1 cut(s) 5
FaeI CATG 1 cut(s) 92
FaiI YATR 3 cut(s) 90, 189, 270
FaqI GGGAC 1 cut(s) 240
FatI CATG 1 cut(s) 88
FbaI TGATCA 1 cut(s) 67
Fnu4HI GCNGC 1 cut(s) 144
FokI GGATG 1 cut(s) 118
FriOI GRGCYC 1 cut(s) 116
Fsp4HI GCNGC 1 cut(s) 144
GluI GCNGC 1 cut(s) 144
Hin1II CATG 1 cut(s) 92
HinfI GANTC 1 cut(s) 17
Hpy188I TCNGA 1 cut(s) 229
Hpy188III TCNNGA 1 cut(s) 89
HpyCH4V TGCA 3 cut(s) 35, 41, 165
HpyF10VI GCNNNNNNNGC 1 cut(s) 162
HpyF3I CTNAG 2 cut(s) 213, 226
Hsp92II CATG 1 cut(s) 92
Ksp22I TGATCA 1 cut(s) 67
Kzo9I GATC 2 cut(s) 26, 67
LguI GCTCTTC 1 cut(s) 104
LpnPI CCDG 6 cut(s) 61, 150, 170, 194, 237, 259
Lsp1109I GCAGC 1 cut(s) 155
MalI GATC 2 cut(s) 28, 69
MboI GATC 2 cut(s) 26, 67
MboII GAAGA 2 cut(s) 121, 141
MhlI GDGCHC 2 cut(s) 116, 180
MluCI AATT 1 cut(s) 148
MmeI TCCRAC 1 cut(s) 76
MnlI CCTC 3 cut(s) 7, 96, 235
MslI CAYNNNNRTG 2 cut(s) 87, 90
MwoI GCNNNNNNNGC 1 cut(s) 162
NdeII GATC 2 cut(s) 26, 67
NlaIII CATG 1 cut(s) 92
NlaIV GGNNCC 2 cut(s) 179, 256
PagI TCATGA 1 cut(s) 88
PciSI GCTCTTC 1 cut(s) 104
PfeI GAWTC 1 cut(s) 17
PkrI GCNGC 1 cut(s) 145
Psp124BI GAGCTC 1 cut(s) 116
PspN4I GGNNCC 2 cut(s) 179, 256
PspPI GGNCC 2 cut(s) 45, 254
RsaI GTAC 1 cut(s) 161
RsaNI GTAC 1 cut(s) 160
RseI CAYNNNNRTG 2 cut(s) 87, 90
SacI GAGCTC 1 cut(s) 116
SapI GCTCTTC 1 cut(s) 104
SatI GCNGC 1 cut(s) 144
Sau3AI GATC 2 cut(s) 26, 67
Sau96I GGNCC 2 cut(s) 45, 254
ScaI AGTACT 1 cut(s) 161
SduI GDGCHC 2 cut(s) 116, 180
SetI ASST 5 cut(s) 47, 53, 116, 227, 278
SgeI CNNG 9 cut(s) 18, 54, 60, 101, 149, 169, 178, 193, 264
SinI GGWCC 2 cut(s) 45, 254
SmiMI CAYNNNNRTG 2 cut(s) 87, 90
Sse9I AATT 1 cut(s) 148
SstI GAGCTC 1 cut(s) 116
StyI CCWWGG 1 cut(s) 5
TasI AATT 1 cut(s) 148
TatI WGTACW 1 cut(s) 159
TfiI GAWTC 1 cut(s) 17
TscAI CASTG 1 cut(s) 256
TseI GCWGC 1 cut(s) 143
TspDTI ATGAA 1 cut(s) 122
TspRI CASTG 1 cut(s) 256
VpaK11BI GGWCC 2 cut(s) 45, 254
XapI RAATTY 1 cut(s) 148
ZrmI AGTACT 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.