Ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G24225 |
| fragaria_vesca | FvH4_4g06620 |
| prunus_persica | Prupe.1G068700_v2.0.a1 |
| pyrus_communis | pycom16g20270 |
| rosa_chinensis | RchiOBHm_Chr4g0398531 |
| rosa_laevigata | RLG00000009347 |
| rosa_rugosa | Rorug04G0008900 |
| rosa_samantha | Rh4DG078500 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 93, 165 |
| AcsI | RAATTY | 1 cut(s) | 104 |
| AdeI | CACNNNGTG | 1 cut(s) | 324 |
| AgeI | ACCGGT | 1 cut(s) | 123 |
| AgsI | TTSAA | 2 cut(s) | 109, 283 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 263, 295 |
| AluBI | AGCT | 2 cut(s) | 39, 232 |
| AluI | AGCT | 2 cut(s) | 39, 232 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 345 |
| ApoI | RAATTY | 1 cut(s) | 104 |
| AsiGI | ACCGGT | 1 cut(s) | 123 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 104 |
| AspA2I | CCTAGG | 1 cut(s) | 287 |
| AspS9I | GGNCC | 1 cut(s) | 203 |
| AsuHPI | GGTGA | 1 cut(s) | 56 |
| AvaII | GGWCC | 1 cut(s) | 203 |
| AvrII | CCTAGG | 1 cut(s) | 287 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 196, 230 |
| BclI | TGATCA | 1 cut(s) | 55 |
| BfaI | CTAG | 3 cut(s) | 233, 242, 288 |
| BisI | GCNGC | 1 cut(s) | 93 |
| BlnI | CCTAGG | 1 cut(s) | 287 |
| BlsI | GCNGC | 1 cut(s) | 94 |
| Bme18I | GGWCC | 1 cut(s) | 203 |
| BmgT120I | GGNCC | 1 cut(s) | 203 |
| BmrI | ACTGGG | 1 cut(s) | 355 |
| BmuI | ACTGGG | 1 cut(s) | 355 |
| BsaBI | GATNNNNATC | 1 cut(s) | 60 |
| BsaJI | CCNNGG | 1 cut(s) | 287 |
| BsaWI | WCCGGW | 1 cut(s) | 123 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 263, 293 |
| Bse118I | RCCGGY | 1 cut(s) | 123 |
| Bse1I | ACTGG | 2 cut(s) | 205, 350 |
| Bse8I | GATNNNNATC | 1 cut(s) | 60 |
| BseDI | CCNNGG | 1 cut(s) | 287 |
| BseJI | GATNNNNATC | 1 cut(s) | 60 |
| BseNI | ACTGG | 2 cut(s) | 205, 350 |
| BshTI | ACCGGT | 1 cut(s) | 123 |
| BsiSI | CCGG | 2 cut(s) | 124, 174 |
| BslFI | GGGAC | 1 cut(s) | 350 |
| BsmFI | GGGAC | 1 cut(s) | 350 |
| Bsp143I | GATC | 2 cut(s) | 32, 55 |
| BspACI | CCGC | 2 cut(s) | 93, 165 |
| BsrFI | RCCGGY | 1 cut(s) | 123 |
| BsrI | ACTGG | 2 cut(s) | 205, 350 |
| BssAI | RCCGGY | 1 cut(s) | 123 |
| BssECI | CCNNGG | 1 cut(s) | 287 |
| BssMI | GATC | 2 cut(s) | 32, 55 |
| BssT1I | CCWWGG | 1 cut(s) | 287 |
| Bst4CI | ACNGT | 2 cut(s) | 82, 322 |
| BstC8I | GCNNGC | 1 cut(s) | 7 |
| BstKTI | GATC | 2 cut(s) | 35, 58 |
| BstMBI | GATC | 2 cut(s) | 32, 55 |
| BtsIMutI | CAGTG | 3 cut(s) | 198, 327, 343 |
| Cac8I | GCNNGC | 1 cut(s) | 7 |
| CaiI | CAGNNNCTG | 1 cut(s) | 345 |
| Cfr10I | RCCGGY | 1 cut(s) | 123 |
| Cfr13I | GGNCC | 1 cut(s) | 203 |
| CspAI | ACCGGT | 1 cut(s) | 123 |
| CviAII | CATG | 2 cut(s) | 71, 362 |
| CviJI | RGCY | 6 cut(s) | 5, 39, 92, 232, 275, 342 |
| CviKI_1 | RGCY | 6 cut(s) | 5, 39, 92, 232, 275, 342 |
| DpnI | GATC | 2 cut(s) | 34, 57 |
| DpnII | GATC | 2 cut(s) | 32, 55 |
| DraIII | CACNNNGTG | 1 cut(s) | 324 |
| Eco130I | CCWWGG | 1 cut(s) | 287 |
| Eco47I | GGWCC | 1 cut(s) | 203 |
| EcoT14I | CCWWGG | 1 cut(s) | 287 |
| ErhI | CCWWGG | 1 cut(s) | 287 |
| FaeI | CATG | 2 cut(s) | 74, 365 |
| FaiI | YATR | 7 cut(s) | 72, 219, 260, 297, 302, 353, 363 |
| FaqI | GGGAC | 1 cut(s) | 350 |
| FatI | CATG | 2 cut(s) | 70, 361 |
| FbaI | TGATCA | 1 cut(s) | 55 |
| Fnu4HI | GCNGC | 1 cut(s) | 93 |
| Fsp4HI | GCNGC | 1 cut(s) | 93 |
| FspBI | CTAG | 3 cut(s) | 233, 242, 288 |
| GluI | GCNGC | 1 cut(s) | 93 |
| HapII | CCGG | 2 cut(s) | 124, 174 |
| Hin1II | CATG | 2 cut(s) | 74, 365 |
| HinfI | GANTC | 1 cut(s) | 208 |
| HpaII | CCGG | 2 cut(s) | 124, 174 |
| HphI | GGTGA | 1 cut(s) | 56 |
| Hpy188I | TCNGA | 1 cut(s) | 207 |
| Hpy188III | TCNNGA | 2 cut(s) | 53, 242 |
| HpyAV | CCTTC | 1 cut(s) | 308 |
| HpyCH4III | ACNGT | 2 cut(s) | 82, 322 |
| HpyCH4V | TGCA | 6 cut(s) | 9, 29, 217, 262, 361, 368 |
| Hsp92II | CATG | 2 cut(s) | 74, 365 |
| Ksp22I | TGATCA | 1 cut(s) | 55 |
| Kzo9I | GATC | 2 cut(s) | 32, 55 |
| LpnPI | CCDG | 6 cut(s) | 137, 186, 187, 208, 253, 331 |
| MaeI | CTAG | 3 cut(s) | 233, 242, 288 |
| MalI | GATC | 2 cut(s) | 34, 57 |
| MboI | GATC | 2 cut(s) | 32, 55 |
| MboII | GAAGA | 2 cut(s) | 112, 133 |
| MluCI | AATT | 4 cut(s) | 104, 250, 263, 376 |
| MmeI | TCCRAC | 1 cut(s) | 138 |
| MnlI | CCTC | 7 cut(s) | 60, 181, 265, 316, 323, 349, 364 |
| MroXI | GAANNNNTTC | 1 cut(s) | 104 |
| MseI | TTAA | 1 cut(s) | 379 |
| MslI | CAYNNNNRTG | 1 cut(s) | 69 |
| MspI | CCGG | 2 cut(s) | 124, 174 |
| NdeII | GATC | 2 cut(s) | 32, 55 |
| NlaIII | CATG | 2 cut(s) | 74, 365 |
| PdmI | GAANNNNTTC | 1 cut(s) | 104 |
| PfeI | GAWTC | 1 cut(s) | 208 |
| PinAI | ACCGGT | 1 cut(s) | 123 |
| PkrI | GCNGC | 1 cut(s) | 94 |
| PspPI | GGNCC | 1 cut(s) | 203 |
| PstNI | CAGNNNCTG | 1 cut(s) | 345 |
| RseI | CAYNNNNRTG | 1 cut(s) | 69 |
| SaqAI | TTAA | 1 cut(s) | 379 |
| SatI | GCNGC | 1 cut(s) | 93 |
| Sau3AI | GATC | 2 cut(s) | 32, 55 |
| Sau96I | GGNCC | 1 cut(s) | 203 |
| SetI | ASST | 5 cut(s) | 41, 173, 234, 289, 360 |
| SinI | GGWCC | 1 cut(s) | 203 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 69 |
| Sse9I | AATT | 4 cut(s) | 104, 250, 263, 376 |
| SsiI | CCGC | 2 cut(s) | 93, 165 |
| SspMI | CTAG | 3 cut(s) | 233, 242, 288 |
| StyI | CCWWGG | 1 cut(s) | 287 |
| TaaI | ACNGT | 2 cut(s) | 82, 322 |
| TaqI | TCGA | 3 cut(s) | 35, 132, 149 |
| TasI | AATT | 4 cut(s) | 104, 250, 263, 376 |
| TauI | GCSGC | 1 cut(s) | 95 |
| TfiI | GAWTC | 1 cut(s) | 208 |
| Tru1I | TTAA | 1 cut(s) | 379 |
| Tru9I | TTAA | 1 cut(s) | 379 |
| TscAI | CASTG | 3 cut(s) | 205, 327, 350 |
| TspDTI | ATGAA | 1 cut(s) | 87 |
| TspGWI | ACGGA | 2 cut(s) | 132, 201 |
| TspRI | CASTG | 3 cut(s) | 205, 327, 350 |
| VpaK11BI | GGWCC | 1 cut(s) | 203 |
| XapI | RAATTY | 1 cut(s) | 104 |
| XbaI | TCTAGA | 1 cut(s) | 241 |
| XmaJI | CCTAGG | 1 cut(s) | 287 |
| XmnI | GAANNNNTTC | 1 cut(s) | 104 |
| XspI | CTAG | 3 cut(s) | 233, 242, 288 |