Prupe.1G091300_v2.0.a1

Belongs to the CRISP family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0017048
Physical Location & Seq
Forward (+)
6871683 .. 6872597
915 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G091300.1

Sequence Viewer

Length: 510 bp
ATGCCTGCAGCATTGTACTACTACTTCACCACCACAATTCTTCTGGTCCTTATCTCAAGCACAAATGCTGCAACAAGGCACAGCCAGTACCTAAGCCAGGCTAACCAATTTTTGGTTCCTCAAAATGCTGCCCGGTCAGCCACCAAAATGAAGCCATTGGTTTGGGATGCGAAGTCGGCAAGGTATGCACAATGGTATGCAAACCAAAGGCGATACGACTGCGCTTTGAGGCACTCAAACGGCCCTTATGGAGAGAACATTTTCTGGGGTAGTGGCACTGGGTGGACGCCGGCTCAGGCAGTGGCGGCATGGGCTTCGGAGAGCAGGTGGTACAATTACTGGTCTAATTCTTGTGCTAGAGGGCAGGAATGTGGGCATTATACACAGATTGTGTGGAGGTCCACAAGAAGAGTTGGGTGTGCTAGAGTCACTTGTTTGGGTGGTAGGGGTGTGTTCATGGTTTGCAACTATGACCCTCCTGGGAATTATATTGGAGAAAGGCCTTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CAP

Protein Analysis

170

Amino Acids

19.19

Weight (kDa)

9.53

Isoelectric Point (pI)

54.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017048)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G30320
fragaria_vesca FvH4_4g09950
malus_domestica MD16G1266300.v1.1
prunus_persica Prupe.1G091300_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0403501
rosa_laevigata RLG00000008972
rosa_multiflora Rmu_sc0007727.1_g000034
rosa_rugosa Rorug04G0043800
rosa_samantha Rh4AG119200 Rh4BG112300 Rh4CG127000 Rh4DG111900
rosa_wichuraiana Rw4G009670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 315
Acc36I ACCTGC 1 cut(s) 315
AccB7I CCANNNNNTGG 1 cut(s) 112
AciI CCGC 1 cut(s) 305
AcyI GRCGYC 1 cut(s) 287
AdeI CACNNNGTG 1 cut(s) 282
AfaI GTAC 3 cut(s) 17, 89, 332
AfiI CCNNNNNNNGG 2 cut(s) 97, 112
AjnI CCWGG 2 cut(s) 96, 478
AjuI GAANNNNNNNTTGG 2 cut(s) 99, 131
AoxI GGCC 2 cut(s) 241, 500
ApeKI GCWGC 3 cut(s) 8, 68, 128
Asp700I GAANNNNTTC 1 cut(s) 260
AspLEI GCGC 1 cut(s) 224
AspS9I GGNCC 3 cut(s) 46, 242, 399
AsuC2I CCSGG 1 cut(s) 133
AsuHPI GGTGA 1 cut(s) 19
AvaII GGWCC 2 cut(s) 46, 399
BarI GAAGNNNNNNTAC 2 cut(s) 8, 40
BbvI GCAGC 3 cut(s) 20, 55, 115
BceAI ACGGC 1 cut(s) 256
BcgI CGANNNNNNTGC 4 cut(s) 201, 235, 297, 331
BciT130I CCWGG 2 cut(s) 98, 480
BcnI CCSGG 1 cut(s) 133
BfaI CTAG 2 cut(s) 357, 423
BfmI CTRYAG 1 cut(s) 6
BfuAI ACCTGC 1 cut(s) 315
BisI GCNGC 4 cut(s) 9, 69, 129, 306
BlsI GCNGC 4 cut(s) 10, 70, 130, 307
Bme1390I CCNGG 3 cut(s) 98, 133, 480
Bme18I GGWCC 2 cut(s) 46, 399
BmgT120I GGNCC 3 cut(s) 46, 242, 399
BmiI GGNNCC 1 cut(s) 117
BmrFI CCNGG 3 cut(s) 98, 133, 480
BmrI ACTGGG 1 cut(s) 288
BmsI GCATC 1 cut(s) 157
BmuI ACTGGG 1 cut(s) 288
Bpu10I CCTNAGC 2 cut(s) 92, 294
BpuEI CTTGAG 1 cut(s) 40
BpuMI CCSGG 1 cut(s) 133
BsaHI GRCGYC 1 cut(s) 287
BsaJI CCNNGG 1 cut(s) 479
BsaXI ACNNNNNCTCC 2 cut(s) 311, 341
Bsc4I CCNNNNNNNGG 2 cut(s) 97, 112
Bse118I RCCGGY 1 cut(s) 289
Bse1I ACTGG 3 cut(s) 85, 283, 344
BseBI CCWGG 2 cut(s) 98, 480
BseDI CCNNGG 1 cut(s) 479
BseGI GGATG 1 cut(s) 172
BseLI CCNNNNNNNGG 2 cut(s) 97, 112
BseMII CTCAG 1 cut(s) 308
BseNI ACTGG 3 cut(s) 85, 283, 344
BseXI GCAGC 3 cut(s) 20, 55, 115
BshFI GGCC 2 cut(s) 243, 502
BsiSI CCGG 2 cut(s) 133, 290
BslI CCNNNNNNNGG 2 cut(s) 97, 112
BsnI GGCC 2 cut(s) 243, 502
BspACI CCGC 1 cut(s) 305
BspANI GGCC 2 cut(s) 243, 502
BspCNI CTCAG 1 cut(s) 307
BspLI GGNNCC 1 cut(s) 117
BspMAI CTGCAG 1 cut(s) 10
BspMI ACCTGC 1 cut(s) 315
BsrFI RCCGGY 1 cut(s) 289
BsrI ACTGG 3 cut(s) 85, 283, 344
BssAI RCCGGY 1 cut(s) 289
BssECI CCNNGG 1 cut(s) 479
BssNI GRCGYC 1 cut(s) 287
Bst2UI CCWGG 2 cut(s) 98, 480
Bst6I CTCTTC 1 cut(s) 403
BstACI GRCGYC 1 cut(s) 287
BstAPI GCANNNNNTGC 1 cut(s) 185
BstC8I GCNNGC 2 cut(s) 6, 291
BstDEI CTNAG 2 cut(s) 92, 294
BstENI CCTNNNNNAGG 1 cut(s) 95
BstF5I GGATG 1 cut(s) 172
BstHHI GCGC 1 cut(s) 224
BstMWI GCNNNNNNNGC 5 cut(s) 137, 176, 185, 305, 311
BstNI CCWGG 2 cut(s) 98, 480
BstSCI CCNGG 3 cut(s) 96, 131, 478
BstSFI CTRYAG 1 cut(s) 6
BstV1I GCAGC 3 cut(s) 20, 55, 115
BstXI CCANNNNNNTGG 1 cut(s) 162
BsuRI GGCC 2 cut(s) 243, 502
BtsCI GGATG 1 cut(s) 172
BtsI GCAGTG 1 cut(s) 306
BtsIMutI CAGTG 2 cut(s) 276, 306
BveI ACCTGC 1 cut(s) 315
Cac8I GCNNGC 2 cut(s) 6, 291
CfoI GCGC 1 cut(s) 224
Cfr10I RCCGGY 1 cut(s) 289
Cfr13I GGNCC 3 cut(s) 46, 242, 399
CseI GACGC 1 cut(s) 295
Csp6I GTAC 3 cut(s) 16, 88, 331
CviAII CATG 2 cut(s) 309, 457
CviJI RGCY 9 cut(s) 84, 96, 101, 140, 154, 243, 293, 314, 502
CviKI_1 RGCY 9 cut(s) 84, 96, 101, 140, 154, 243, 293, 314, 502
CviQI GTAC 3 cut(s) 16, 88, 331
DdeI CTNAG 2 cut(s) 92, 294
DraIII CACNNNGTG 1 cut(s) 282
Eam1104I CTCTTC 1 cut(s) 403
EarI CTCTTC 1 cut(s) 403
Eco147I AGGCCT 1 cut(s) 502
Eco47I GGWCC 2 cut(s) 46, 399
EcoNI CCTNNNNNAGG 1 cut(s) 95
EcoRII CCWGG 2 cut(s) 96, 478
FaeI CATG 2 cut(s) 312, 460
FaiI YATR 8 cut(s) 186, 198, 249, 310, 381, 458, 471, 489
FatI CATG 2 cut(s) 308, 456
Fnu4HI GCNGC 4 cut(s) 9, 69, 129, 306
FokI GGATG 1 cut(s) 179
Fsp4HI GCNGC 4 cut(s) 9, 69, 129, 306
FspBI CTAG 2 cut(s) 357, 423
GlaI GCGC 1 cut(s) 223
GluI GCNGC 4 cut(s) 9, 69, 129, 306
HaeIII GGCC 2 cut(s) 243, 502
HapII CCGG 2 cut(s) 133, 290
HgaI GACGC 1 cut(s) 295
HhaI GCGC 1 cut(s) 224
Hin1I GRCGYC 1 cut(s) 287
Hin1II CATG 2 cut(s) 312, 460
Hin6I GCGC 1 cut(s) 222
HinP1I GCGC 1 cut(s) 222
HinfI GANTC 1 cut(s) 426
HpaII CCGG 2 cut(s) 133, 290
HphI GGTGA 1 cut(s) 19
Hpy166II GTNNAC 2 cut(s) 285, 402
Hpy188I TCNGA 1 cut(s) 319
Hpy8I GTNNAC 2 cut(s) 285, 402
HpyCH4V TGCA 5 cut(s) 8, 71, 188, 200, 465
HpyF10VI GCNNNNNNNGC 5 cut(s) 137, 176, 185, 305, 311
HpyF3I CTNAG 2 cut(s) 92, 294
Hsp92I GRCGYC 1 cut(s) 287
Hsp92II CATG 2 cut(s) 312, 460
HspAI GCGC 1 cut(s) 222
KroI GCCGGC 1 cut(s) 289
KroNI GCCGGC 1 cut(s) 291
Lsp1109I GCAGC 3 cut(s) 20, 55, 115
LweI GCATC 1 cut(s) 157
MaeI CTAG 2 cut(s) 357, 423
MaeIII GTNAC 1 cut(s) 427
MboII GAAGA 2 cut(s) 32, 420
MluCI AATT 5 cut(s) 36, 107, 334, 346, 484
MlyI GAGTC 1 cut(s) 435
MnlI CCTC 5 cut(s) 129, 222, 353, 390, 486
MroNI GCCGGC 1 cut(s) 289
MroXI GAANNNNTTC 1 cut(s) 260
MslI CAYNNNNRTG 1 cut(s) 146
MspI CCGG 2 cut(s) 133, 290
MspR9I CCNGG 3 cut(s) 98, 133, 480
MvaI CCWGG 2 cut(s) 98, 480
MwoI GCNNNNNNNGC 5 cut(s) 137, 176, 185, 305, 311
NaeI GCCGGC 1 cut(s) 291
NciI CCSGG 1 cut(s) 133
NgoMIV GCCGGC 1 cut(s) 289
NlaIII CATG 2 cut(s) 312, 460
NlaIV GGNNCC 1 cut(s) 117
NmuCI GTSAC 1 cut(s) 427
PaqCI CACCTGC 1 cut(s) 315
PceI AGGCCT 1 cut(s) 502
PdiI GCCGGC 1 cut(s) 291
PdmI GAANNNNTTC 1 cut(s) 260
PflMI CCANNNNNTGG 1 cut(s) 112
PkrI GCNGC 4 cut(s) 10, 70, 130, 307
PleI GAGTC 1 cut(s) 434
PpsI GAGTC 1 cut(s) 434
Psp6I CCWGG 2 cut(s) 96, 478
PspGI CCWGG 2 cut(s) 96, 478
PspN4I GGNNCC 1 cut(s) 117
PspPI GGNCC 3 cut(s) 46, 242, 399
PstI CTGCAG 1 cut(s) 10
RsaI GTAC 3 cut(s) 17, 89, 332
RsaNI GTAC 3 cut(s) 16, 88, 331
RseI CAYNNNNRTG 1 cut(s) 146
SatI GCNGC 4 cut(s) 9, 69, 129, 306
Sau96I GGNCC 3 cut(s) 46, 242, 399
SchI GAGTC 1 cut(s) 435
ScrFI CCNGG 3 cut(s) 98, 133, 480
SetI ASST 4 cut(s) 93, 185, 329, 401
SfaNI GCATC 1 cut(s) 157
SfcI CTRYAG 1 cut(s) 6
SinI GGWCC 2 cut(s) 46, 399
SmiMI CAYNNNNRTG 1 cut(s) 146
SmlI CTYRAG 1 cut(s) 55
SmoI CTYRAG 1 cut(s) 55
Sse9I AATT 5 cut(s) 36, 107, 334, 346, 484
SseBI AGGCCT 1 cut(s) 502
SsiI CCGC 1 cut(s) 305
SspMI CTAG 2 cut(s) 357, 423
StuI AGGCCT 1 cut(s) 502
StyD4I CCNGG 3 cut(s) 96, 131, 478
TasI AATT 5 cut(s) 36, 107, 334, 346, 484
TatI WGTACW 1 cut(s) 15
TauI GCSGC 1 cut(s) 308
TscAI CASTG 2 cut(s) 283, 306
TseFI GTSAC 1 cut(s) 427
TseI GCWGC 3 cut(s) 8, 68, 128
Tsp45I GTSAC 1 cut(s) 427
TspDTI ATGAA 2 cut(s) 164, 445
TspRI CASTG 2 cut(s) 283, 306
Van91I CCANNNNNTGG 1 cut(s) 112
VpaK11BI GGWCC 2 cut(s) 46, 399
XagI CCTNNNNNAGG 1 cut(s) 95
XcmI CCANNNNNNNNNTGG 1 cut(s) 40
XmnI GAANNNNTTC 1 cut(s) 260
XspI CTAG 2 cut(s) 357, 423
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.