RLG00000008972

Belongs to the CRISP family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0017048
Physical Location & Seq
Reverse (-)
44085466 .. 44085981
516 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008972

Sequence Viewer

Length: 516 bp
ATGCCCACAATGTACTGCTTCACCATCATAATTTATCTTCTCCTTATCTCAACCACATATGCATATTCTGCGCCCTCAAAGCAAGCGCAGCAGTACCTAAGCCTTGCATACAAGTTCTTGGCTCCTCAAAATGCTGCTCGATCTGCCGTCCGAATGAGGCCCTTGGTGTGGGATGCAAAGCTTGCTAGGTATGCACAGTGGTACGGCAACCAGAGGCGATACGACTGCGCTTTGAGGCACTCCAACGGGCCTTACGGCGAGAATATATTCTGGGGTAGCGGCAAGGGGTGGACACCGGCTCAGGCGGTGACGGCTTGGGTTTCGGAACGGAAGTGGTACAGTTACTGGTCAAATTCTTGTGCCGGAGGGCAGGAATGCGGGCATTATACGCAGATTGTGTGGAGGAGTACAGGAAGAGTTGGGTGCGCTAGAGTTGATTGTTTTGGTGGGAGGGGTGTGTTCATGGTTTGTAGCTATGATCCTCCTGGGAACTATATTGGAGAAAGGCCTTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CAP

Protein Analysis

172

Amino Acids

19.5

Weight (kDa)

9.38

Isoelectric Point (pI)

41.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CAP PF00188 42 - 159 9.8e-19 Cysteine-rich secretory protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017048)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G30320
fragaria_vesca FvH4_4g09950
malus_domestica MD16G1266300.v1.1
prunus_persica Prupe.1G091300_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0403501
rosa_laevigata RLG00000008972
rosa_multiflora Rmu_sc0007727.1_g000034
rosa_rugosa Rorug04G0043800
rosa_samantha Rh4AG119200 Rh4BG112300 Rh4CG127000 Rh4DG111900
rosa_wichuraiana Rw4G009670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 279, 305, 378
AclWI GGATC 1 cut(s) 473
AcsI RAATTY 1 cut(s) 352
AfaI GTAC 5 cut(s) 14, 95, 203, 338, 409
AfiI CCNNNNNNNGG 1 cut(s) 168
AjnI CCWGG 1 cut(s) 484
AluBI AGCT 2 cut(s) 181, 474
AluI AGCT 2 cut(s) 181, 474
AlwI GGATC 1 cut(s) 473
AlwNI CAGNNNCTG 1 cut(s) 345
AoxI GGCC 3 cut(s) 158, 248, 506
ApeKI GCWGC 2 cut(s) 88, 134
ApoI RAATTY 1 cut(s) 352
Asp700I GAANNNNTTC 1 cut(s) 266
AspLEI GCGC 4 cut(s) 73, 88, 230, 428
AspS9I GGNCC 2 cut(s) 159, 248
AsuHPI GGTGA 2 cut(s) 13, 319
BbvI GCAGC 2 cut(s) 100, 121
BccI CCATC 1 cut(s) 32
BceAI ACGGC 4 cut(s) 131, 220, 271, 327
BcgI CGANNNNNNTGC 2 cut(s) 207, 241
BciT130I CCWGG 1 cut(s) 486
BfaI CTAG 2 cut(s) 186, 429
BisI GCNGC 3 cut(s) 89, 135, 280
BlsI GCNGC 3 cut(s) 90, 136, 281
Bme1390I CCNGG 1 cut(s) 486
BmgT120I GGNCC 2 cut(s) 159, 248
BmiI GGNNCC 1 cut(s) 123
BmrFI CCNGG 1 cut(s) 486
BmsI GCATC 1 cut(s) 163
Bpu10I CCTNAGC 2 cut(s) 98, 300
BsaJI CCNNGG 2 cut(s) 162, 485
Bsc4I CCNNNNNNNGG 1 cut(s) 168
Bse118I RCCGGY 1 cut(s) 295
Bse1I ACTGG 1 cut(s) 350
BseBI CCWGG 1 cut(s) 486
BseDI CCNNGG 2 cut(s) 162, 485
BseGI GGATG 1 cut(s) 178
BseLI CCNNNNNNNGG 1 cut(s) 168
BseMII CTCAG 1 cut(s) 314
BseNI ACTGG 1 cut(s) 350
BseRI GAGGAG 2 cut(s) 114, 418
BseXI GCAGC 2 cut(s) 100, 121
BshFI GGCC 3 cut(s) 160, 250, 508
BsiSI CCGG 2 cut(s) 296, 363
BslI CCNNNNNNNGG 1 cut(s) 168
BsmI GAATGC 1 cut(s) 380
BsnI GGCC 3 cut(s) 160, 250, 508
Bsp143I GATC 2 cut(s) 140, 478
BspACI CCGC 3 cut(s) 279, 305, 378
BspANI GGCC 3 cut(s) 160, 250, 508
BspCNI CTCAG 1 cut(s) 313
BspLI GGNNCC 1 cut(s) 123
BspPI GGATC 1 cut(s) 473
BsrFI RCCGGY 1 cut(s) 295
BsrI ACTGG 1 cut(s) 350
BssAI RCCGGY 1 cut(s) 295
BssECI CCNNGG 2 cut(s) 162, 485
BssMI GATC 2 cut(s) 140, 478
BssT1I CCWWGG 1 cut(s) 162
Bst2UI CCWGG 1 cut(s) 486
Bst4CI ACNGT 2 cut(s) 198, 341
Bst6I CTCTTC 1 cut(s) 409
BstAPI GCANNNNNTGC 2 cut(s) 68, 182
BstC8I GCNNGC 3 cut(s) 84, 183, 380
BstDEI CTNAG 2 cut(s) 98, 300
BstF5I GGATG 1 cut(s) 178
BstHHI GCGC 4 cut(s) 73, 88, 230, 428
BstKTI GATC 2 cut(s) 143, 481
BstMBI GATC 2 cut(s) 140, 478
BstMWI GCNNNNNNNGC 8 cut(s) 68, 79, 88, 143, 182, 191, 311, 388
BstNI CCWGG 1 cut(s) 486
BstSCI CCNGG 1 cut(s) 484
BstV1I GCAGC 2 cut(s) 100, 121
BsuRI GGCC 3 cut(s) 160, 250, 508
BtsCI GGATG 1 cut(s) 178
BtsIMutI CAGTG 1 cut(s) 203
Cac8I GCNNGC 3 cut(s) 84, 183, 380
CaiI CAGNNNCTG 1 cut(s) 345
CfoI GCGC 4 cut(s) 73, 88, 230, 428
Cfr10I RCCGGY 1 cut(s) 295
Cfr13I GGNCC 2 cut(s) 159, 248
Csp6I GTAC 5 cut(s) 13, 94, 202, 337, 408
CviAII CATG 1 cut(s) 463
CviJI RGCY 9 cut(s) 102, 122, 160, 181, 250, 299, 314, 474, 508
CviKI_1 RGCY 9 cut(s) 102, 122, 160, 181, 250, 299, 314, 474, 508
CviQI GTAC 5 cut(s) 13, 94, 202, 337, 408
DdeI CTNAG 2 cut(s) 98, 300
DpnI GATC 2 cut(s) 142, 480
DpnII GATC 2 cut(s) 140, 478
Eam1104I CTCTTC 1 cut(s) 409
EarI CTCTTC 1 cut(s) 409
Eco130I CCWWGG 1 cut(s) 162
Eco147I AGGCCT 1 cut(s) 508
EcoO109I RGGNCCY 1 cut(s) 159
EcoRII CCWGG 1 cut(s) 484
EcoT14I CCWWGG 1 cut(s) 162
EcoT22I ATGCAT 1 cut(s) 64
ErhI CCWWGG 1 cut(s) 162
FaeI CATG 1 cut(s) 466
FatI CATG 1 cut(s) 462
FauI CCCGC 1 cut(s) 371
FauNDI CATATG 1 cut(s) 58
Fnu4HI GCNGC 3 cut(s) 89, 135, 280
FokI GGATG 1 cut(s) 185
Fsp4HI GCNGC 3 cut(s) 89, 135, 280
FspBI CTAG 2 cut(s) 186, 429
GlaI GCGC 4 cut(s) 72, 87, 229, 427
GluI GCNGC 3 cut(s) 89, 135, 280
HaeIII GGCC 3 cut(s) 160, 250, 508
HapII CCGG 2 cut(s) 296, 363
HhaI GCGC 4 cut(s) 73, 88, 230, 428
Hin1II CATG 1 cut(s) 466
Hin6I GCGC 4 cut(s) 71, 86, 228, 426
HinP1I GCGC 4 cut(s) 71, 86, 228, 426
HindIII AAGCTT 1 cut(s) 179
HpaII CCGG 2 cut(s) 296, 363
HphI GGTGA 2 cut(s) 13, 319
Hpy166II GTNNAC 1 cut(s) 291
Hpy188I TCNGA 2 cut(s) 152, 325
Hpy8I GTNNAC 1 cut(s) 291
HpyCH4III ACNGT 2 cut(s) 198, 341
HpyCH4V TGCA 4 cut(s) 62, 107, 176, 194
HpyF10VI GCNNNNNNNGC 8 cut(s) 68, 79, 88, 143, 182, 191, 311, 388
HpyF3I CTNAG 2 cut(s) 98, 300
Hsp92II CATG 1 cut(s) 466
HspAI GCGC 4 cut(s) 71, 86, 228, 426
Kzo9I GATC 2 cut(s) 140, 478
LmnI GCTCC 1 cut(s) 127
Lsp1109I GCAGC 2 cut(s) 100, 121
LweI GCATC 1 cut(s) 163
MaeI CTAG 2 cut(s) 186, 429
MaeIII GTNAC 2 cut(s) 307, 341
MalI GATC 2 cut(s) 142, 480
MboI GATC 2 cut(s) 140, 478
MboII GAAGA 2 cut(s) 29, 426
MluCI AATT 2 cut(s) 30, 352
MmeI TCCRAC 1 cut(s) 267
MnlI CCTC 9 cut(s) 85, 135, 150, 207, 228, 359, 396, 444, 492
Mph1103I ATGCAT 1 cut(s) 64
MroXI GAANNNNTTC 1 cut(s) 266
MseI TTAA 1 cut(s) 514
MspI CCGG 2 cut(s) 296, 363
MspR9I CCNGG 1 cut(s) 486
Mva1269I GAATGC 1 cut(s) 380
MvaI CCWGG 1 cut(s) 486
MwoI GCNNNNNNNGC 8 cut(s) 68, 79, 88, 143, 182, 191, 311, 388
NdeI CATATG 1 cut(s) 58
NdeII GATC 2 cut(s) 140, 478
NlaIII CATG 1 cut(s) 466
NlaIV GGNNCC 1 cut(s) 123
NmuCI GTSAC 1 cut(s) 307
NsiI ATGCAT 1 cut(s) 64
PceI AGGCCT 1 cut(s) 508
PctI GAATGC 1 cut(s) 380
PdmI GAANNNNTTC 1 cut(s) 266
PkrI GCNGC 3 cut(s) 90, 136, 281
Psp6I CCWGG 1 cut(s) 484
PspGI CCWGG 1 cut(s) 484
PspN4I GGNNCC 1 cut(s) 123
PspPI GGNCC 2 cut(s) 159, 248
PstNI CAGNNNCTG 1 cut(s) 345
RsaI GTAC 5 cut(s) 14, 95, 203, 338, 409
RsaNI GTAC 5 cut(s) 13, 94, 202, 337, 408
SaqAI TTAA 1 cut(s) 514
SatI GCNGC 3 cut(s) 89, 135, 280
Sau3AI GATC 2 cut(s) 140, 478
Sau96I GGNCC 2 cut(s) 159, 248
ScrFI CCNGG 1 cut(s) 486
SetI ASST 4 cut(s) 99, 183, 191, 476
SfaNI GCATC 1 cut(s) 163
Sse9I AATT 2 cut(s) 30, 352
SseBI AGGCCT 1 cut(s) 508
SsiI CCGC 3 cut(s) 279, 305, 378
SspMI CTAG 2 cut(s) 186, 429
StuI AGGCCT 1 cut(s) 508
StyD4I CCNGG 1 cut(s) 484
StyI CCWWGG 1 cut(s) 162
TaaI ACNGT 2 cut(s) 198, 341
TaqI TCGA 1 cut(s) 139
TasI AATT 2 cut(s) 30, 352
TatI WGTACW 2 cut(s) 12, 407
TauI GCSGC 1 cut(s) 282
Tru1I TTAA 1 cut(s) 514
Tru9I TTAA 1 cut(s) 514
TscAI CASTG 1 cut(s) 203
TseFI GTSAC 1 cut(s) 307
TseI GCWGC 2 cut(s) 88, 134
Tsp45I GTSAC 1 cut(s) 307
TspDTI ATGAA 1 cut(s) 451
TspGWI ACGGA 1 cut(s) 343
TspRI CASTG 1 cut(s) 203
XapI RAATTY 1 cut(s) 352
XmnI GAANNNNTTC 1 cut(s) 266
XspI CTAG 2 cut(s) 186, 429
Zsp2I ATGCAT 1 cut(s) 64
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.