Rw4G009670

Belongs to the CRISP family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0017048
Physical Location & Seq
Forward (+)
21801803 .. 21802653
851 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G009670.1

Sequence Viewer

Length: 540 bp
ATGAAAGACTCAATCCATAGAACAATGCCCACATTGTACTGCTTCACCATCACAATTTCTCTTCTCCTTATCTCAACCACATATGCATATTCTGCGCCCTCAAAGCAAACGCAGCAGTACCTAAGCCTTGCATACAAGTTCTTGGCTCCTCAAAATGCTGCTCGGTCTGCCGTCCGAATGAGGCCCTTGGTGTGGGATGCAAAGCTTGCTAGGTATGCACAGTGGTACGGCAACCAGAGGCGATACGACTGCGCTTTGAGGCACTCCAACGGGCCTTACGGCGAGAATATATTCTGGGGTAGCGGCAAGGGGTGGACGCCGGCTGAGGCGGTGACGGCTTGGGTTTCCGAACGGAAGTGGTACAGTTACTGGTCAAATTCTTGTGCCAGAGGACAGGAATGCGGGCATTATACGCAGATTGTGTGGAGGAGTACAGGAAGAGTTGGGTGCGCTAGAGTTGATTGTTTTGGTGGGAGGGGTGTGTTCATGGTTTGTAGCTATGATCCTCCTGGGAACTATATTGGAGAAAGGCCTTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CAP

Protein Analysis

179

Amino Acids

20.49

Weight (kDa)

9.47

Isoelectric Point (pI)

38.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CAP PF00188 50 - 167 8.7e-19 Cysteine-rich secretory protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017048)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G30320
fragaria_vesca FvH4_4g09950
malus_domestica MD16G1266300.v1.1
prunus_persica Prupe.1G091300_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0403501
rosa_laevigata RLG00000008972
rosa_multiflora Rmu_sc0007727.1_g000034
rosa_rugosa Rorug04G0043800
rosa_samantha Rh4AG119200 Rh4BG112300 Rh4CG127000 Rh4DG111900
rosa_wichuraiana Rw4G009670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 303, 329, 402
AclWI GGATC 1 cut(s) 497
AcsI RAATTY 1 cut(s) 376
AcyI GRCGYC 1 cut(s) 317
AfaI GTAC 5 cut(s) 38, 119, 227, 362, 433
AfiI CCNNNNNNNGG 1 cut(s) 192
AjnI CCWGG 1 cut(s) 508
AluBI AGCT 2 cut(s) 205, 498
AluI AGCT 2 cut(s) 205, 498
AlwI GGATC 1 cut(s) 497
AlwNI CAGNNNCTG 1 cut(s) 369
AoxI GGCC 3 cut(s) 182, 272, 530
ApeKI GCWGC 2 cut(s) 112, 158
ApoI RAATTY 1 cut(s) 376
Asp700I GAANNNNTTC 1 cut(s) 290
AspLEI GCGC 3 cut(s) 97, 254, 452
AspS9I GGNCC 2 cut(s) 183, 272
AsuHPI GGTGA 2 cut(s) 37, 343
BbvCI CCTCAGC 1 cut(s) 324
BbvI GCAGC 2 cut(s) 124, 145
BccI CCATC 1 cut(s) 56
BceAI ACGGC 4 cut(s) 155, 244, 295, 351
BcgI CGANNNNNNTGC 2 cut(s) 231, 265
BciT130I CCWGG 1 cut(s) 510
BfaI CTAG 2 cut(s) 210, 453
BisI GCNGC 3 cut(s) 113, 159, 304
BlsI GCNGC 3 cut(s) 114, 160, 305
Bme1390I CCNGG 1 cut(s) 510
BmgT120I GGNCC 2 cut(s) 183, 272
BmiI GGNNCC 1 cut(s) 147
BmrFI CCNGG 1 cut(s) 510
BmsI GCATC 1 cut(s) 187
Bpu10I CCTNAGC 2 cut(s) 122, 324
BsaHI GRCGYC 1 cut(s) 317
BsaJI CCNNGG 2 cut(s) 186, 509
Bsc4I CCNNNNNNNGG 1 cut(s) 192
Bse118I RCCGGY 1 cut(s) 319
Bse1I ACTGG 1 cut(s) 374
BseBI CCWGG 1 cut(s) 510
BseDI CCNNGG 2 cut(s) 186, 509
BseGI GGATG 1 cut(s) 202
BseLI CCNNNNNNNGG 1 cut(s) 192
BseMII CTCAG 1 cut(s) 315
BseNI ACTGG 1 cut(s) 374
BseRI GAGGAG 2 cut(s) 138, 442
BseXI GCAGC 2 cut(s) 124, 145
BshFI GGCC 3 cut(s) 184, 274, 532
BsiSI CCGG 1 cut(s) 320
BslI CCNNNNNNNGG 1 cut(s) 192
BsmI GAATGC 1 cut(s) 404
BsnI GGCC 3 cut(s) 184, 274, 532
Bsp143I GATC 1 cut(s) 502
BspACI CCGC 3 cut(s) 303, 329, 402
BspANI GGCC 3 cut(s) 184, 274, 532
BspCNI CTCAG 1 cut(s) 316
BspLI GGNNCC 1 cut(s) 147
BspPI GGATC 1 cut(s) 497
BsrFI RCCGGY 1 cut(s) 319
BsrI ACTGG 1 cut(s) 374
BssAI RCCGGY 1 cut(s) 319
BssECI CCNNGG 2 cut(s) 186, 509
BssMI GATC 1 cut(s) 502
BssNI GRCGYC 1 cut(s) 317
BssT1I CCWWGG 1 cut(s) 186
Bst2UI CCWGG 1 cut(s) 510
Bst4CI ACNGT 2 cut(s) 222, 365
Bst6I CTCTTC 2 cut(s) 66, 433
BstACI GRCGYC 1 cut(s) 317
BstAPI GCANNNNNTGC 2 cut(s) 92, 206
BstC8I GCNNGC 3 cut(s) 207, 321, 404
BstDEI CTNAG 2 cut(s) 122, 324
BstF5I GGATG 1 cut(s) 202
BstHHI GCGC 3 cut(s) 97, 254, 452
BstKTI GATC 1 cut(s) 505
BstMBI GATC 1 cut(s) 502
BstMWI GCNNNNNNNGC 8 cut(s) 92, 103, 112, 167, 206, 215, 335, 412
BstNI CCWGG 1 cut(s) 510
BstSCI CCNGG 1 cut(s) 508
BstV1I GCAGC 2 cut(s) 124, 145
BsuRI GGCC 3 cut(s) 184, 274, 532
BtsCI GGATG 1 cut(s) 202
BtsIMutI CAGTG 1 cut(s) 227
Cac8I GCNNGC 3 cut(s) 207, 321, 404
CaiI CAGNNNCTG 1 cut(s) 369
CfoI GCGC 3 cut(s) 97, 254, 452
Cfr10I RCCGGY 1 cut(s) 319
Cfr13I GGNCC 2 cut(s) 183, 272
CseI GACGC 1 cut(s) 325
Csp6I GTAC 5 cut(s) 37, 118, 226, 361, 432
CviAII CATG 1 cut(s) 487
CviJI RGCY 9 cut(s) 126, 146, 184, 205, 274, 323, 338, 498, 532
CviKI_1 RGCY 9 cut(s) 126, 146, 184, 205, 274, 323, 338, 498, 532
CviQI GTAC 5 cut(s) 37, 118, 226, 361, 432
DdeI CTNAG 2 cut(s) 122, 324
DpnI GATC 1 cut(s) 504
DpnII GATC 1 cut(s) 502
Eam1104I CTCTTC 2 cut(s) 66, 433
EarI CTCTTC 2 cut(s) 66, 433
Eco130I CCWWGG 1 cut(s) 186
Eco147I AGGCCT 1 cut(s) 532
EcoO109I RGGNCCY 1 cut(s) 183
EcoRII CCWGG 1 cut(s) 508
EcoT14I CCWWGG 1 cut(s) 186
EcoT22I ATGCAT 1 cut(s) 88
ErhI CCWWGG 1 cut(s) 186
FaeI CATG 1 cut(s) 490
FatI CATG 1 cut(s) 486
FauI CCCGC 1 cut(s) 395
FauNDI CATATG 1 cut(s) 82
Fnu4HI GCNGC 3 cut(s) 113, 159, 304
FokI GGATG 1 cut(s) 209
Fsp4HI GCNGC 3 cut(s) 113, 159, 304
FspBI CTAG 2 cut(s) 210, 453
GlaI GCGC 3 cut(s) 96, 253, 451
GluI GCNGC 3 cut(s) 113, 159, 304
HaeIII GGCC 3 cut(s) 184, 274, 532
HapII CCGG 1 cut(s) 320
HgaI GACGC 1 cut(s) 325
HhaI GCGC 3 cut(s) 97, 254, 452
Hin1I GRCGYC 1 cut(s) 317
Hin1II CATG 1 cut(s) 490
Hin6I GCGC 3 cut(s) 95, 252, 450
HinP1I GCGC 3 cut(s) 95, 252, 450
HindIII AAGCTT 1 cut(s) 203
HinfI GANTC 1 cut(s) 8
HpaII CCGG 1 cut(s) 320
HphI GGTGA 2 cut(s) 37, 343
Hpy166II GTNNAC 1 cut(s) 315
Hpy188I TCNGA 2 cut(s) 176, 349
Hpy8I GTNNAC 1 cut(s) 315
HpyCH4III ACNGT 2 cut(s) 222, 365
HpyCH4V TGCA 4 cut(s) 86, 131, 200, 218
HpyF10VI GCNNNNNNNGC 8 cut(s) 92, 103, 112, 167, 206, 215, 335, 412
HpyF3I CTNAG 2 cut(s) 122, 324
Hsp92I GRCGYC 1 cut(s) 317
Hsp92II CATG 1 cut(s) 490
HspAI GCGC 3 cut(s) 95, 252, 450
KroI GCCGGC 1 cut(s) 319
KroNI GCCGGC 1 cut(s) 321
Kzo9I GATC 1 cut(s) 502
LmnI GCTCC 1 cut(s) 151
LpnPI CCDG 9 cut(s) 248, 280, 333, 355, 380, 400, 420, 495, 522
Lsp1109I GCAGC 2 cut(s) 124, 145
LweI GCATC 1 cut(s) 187
MaeI CTAG 2 cut(s) 210, 453
MaeIII GTNAC 2 cut(s) 331, 365
MalI GATC 1 cut(s) 504
MboI GATC 1 cut(s) 502
MboII GAAGA 2 cut(s) 53, 450
MluCI AATT 2 cut(s) 54, 376
MlyI GAGTC 1 cut(s) 2
MmeI TCCRAC 1 cut(s) 291
Mph1103I ATGCAT 1 cut(s) 88
MroNI GCCGGC 1 cut(s) 319
MroXI GAANNNNTTC 1 cut(s) 290
MseI TTAA 1 cut(s) 538
MspI CCGG 1 cut(s) 320
MspR9I CCNGG 1 cut(s) 510
Mva1269I GAATGC 1 cut(s) 404
MvaI CCWGG 1 cut(s) 510
MwoI GCNNNNNNNGC 8 cut(s) 92, 103, 112, 167, 206, 215, 335, 412
NaeI GCCGGC 1 cut(s) 321
NdeI CATATG 1 cut(s) 82
NdeII GATC 1 cut(s) 502
NgoMIV GCCGGC 1 cut(s) 319
NlaIII CATG 1 cut(s) 490
NlaIV GGNNCC 1 cut(s) 147
NmuCI GTSAC 1 cut(s) 331
NsiI ATGCAT 1 cut(s) 88
PceI AGGCCT 1 cut(s) 532
PctI GAATGC 1 cut(s) 404
PdiI GCCGGC 1 cut(s) 321
PdmI GAANNNNTTC 1 cut(s) 290
PkrI GCNGC 3 cut(s) 114, 160, 305
PleI GAGTC 1 cut(s) 2
PpsI GAGTC 1 cut(s) 2
Psp6I CCWGG 1 cut(s) 508
PspGI CCWGG 1 cut(s) 508
PspN4I GGNNCC 1 cut(s) 147
PspPI GGNCC 2 cut(s) 183, 272
PstNI CAGNNNCTG 1 cut(s) 369
RsaI GTAC 5 cut(s) 38, 119, 227, 362, 433
RsaNI GTAC 5 cut(s) 37, 118, 226, 361, 432
SaqAI TTAA 1 cut(s) 538
SatI GCNGC 3 cut(s) 113, 159, 304
Sau3AI GATC 1 cut(s) 502
Sau96I GGNCC 2 cut(s) 183, 272
SchI GAGTC 1 cut(s) 2
ScrFI CCNGG 1 cut(s) 510
SetI ASST 4 cut(s) 123, 207, 215, 500
SfaNI GCATC 1 cut(s) 187
Sse9I AATT 2 cut(s) 54, 376
SseBI AGGCCT 1 cut(s) 532
SsiI CCGC 3 cut(s) 303, 329, 402
SspMI CTAG 2 cut(s) 210, 453
StuI AGGCCT 1 cut(s) 532
StyD4I CCNGG 1 cut(s) 508
StyI CCWWGG 1 cut(s) 186
TaaI ACNGT 2 cut(s) 222, 365
TaqII GACCGA 1 cut(s) 153
TasI AATT 2 cut(s) 54, 376
TatI WGTACW 2 cut(s) 36, 431
TauI GCSGC 1 cut(s) 306
Tru1I TTAA 1 cut(s) 538
Tru9I TTAA 1 cut(s) 538
TscAI CASTG 1 cut(s) 227
TseFI GTSAC 1 cut(s) 331
TseI GCWGC 2 cut(s) 112, 158
Tsp45I GTSAC 1 cut(s) 331
TspDTI ATGAA 2 cut(s) 17, 475
TspGWI ACGGA 1 cut(s) 367
TspRI CASTG 1 cut(s) 227
XapI RAATTY 1 cut(s) 376
XmnI GAANNNNTTC 1 cut(s) 290
XspI CTAG 2 cut(s) 210, 453
Zsp2I ATGCAT 1 cut(s) 88
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.