Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0013381

Physical Location & Seq

Genomic Coordinates Reverse (-)

12105792 .. 12108784

Gene Structure 2993 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G153700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGCTTTTCATGCCGCAGGATGCAAGAAGCAAGGATATTGAGGATGTTCTGATCCTGTCTGGTGATCATTTGTATCGAATGGACTACTTGGACTTTGTTCAAAATCATAGGCAGAGTGGTGCAGATATTACCATTTCTTGTTTGCCGATGGATGACAGCCGAGCCTCAGATTTTGGTCTAATGAAGATAGATAAGAAAGGACGGGTCCTATCGTTCAGCGAAAAACCTAAAGGAGACGACCTGAAGGCAATGGCAGTAGATACAACCGTTTTGGGACTTTCTGTGGAGGAGGCTCTAAAGAAACCATACATTGCTTCCATGGGAGTGTATGTCTTCAAGAAGGAGATACTTCTGAATCTTTTAAGATGGCGTTTTCCGACTGCAAATGACTTTGGATCAGAGATAATCCCCGCCTCAGCTAAAGAATTCTTCATTAAGGCTTATCTGTTCAATGATTACTGGGAAGACATAGGGACCATCAGATCCTTCTTTGAGGCAAACCTTGCCCTCACCGAGCATCCAAACAAGTTCAGTTTTTACGATGCAGCAAAGCCGATGTATACTTCAAGAAGAAACTTGCCTCCATCAAAGATTGACAATAGCAAGATCGTTGACTCCATCATATCACATGGAAGTTTCATAACTGATAGCTTTATAGAGCACAGTGTTGTCGGTATCAGATCTCGAATAAACTCAAATGTACACTTAAAGGACACAGTAATGCTTGGTGCTGATTACTATGAAACCGATGCTGAAGTGGCATCACTATTAGCTGAAGGAAGAGTTCCTGTTGGAATTGGAGAGAACACAAAAATCAAAGACTGCATCATTGACAAAAATGCAAGAATCGGCAAGAATGTTGTTATTGCAAACTCAGAGGGCGTACAGGAGGCTGACAGATCTTCTGAAGGGTTTTACATCCGATCTGGTATAACCATCATATTGAAAAATTCGGTCATCGTAGATGGACTTGTGATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008878 GO:0009501 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0016740 GO:0016772 GO:0016779 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0070566

KEGG Pathways

Metabolic & Signaling

ko00500 ko00520 ko01100 ko01110 ko02026 map00500 map00520 map01100 map01110 map02026

Pfam Domains

Protein Families

NTP_transferase

Protein Analysis

327

Amino Acids

36.46

Weight (kDa)

5.49

Isoelectric Point (pI)

37.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19220
fragaria_vesca	FvH4_4g14880
malus_domestica	MD13G1186100.v1.1 MD16G1186900.v1.1
prunus_persica	Prupe.1G153700_v2.0.a1
pyrus_communis	pycom13g16110 pycom16g15680
rosa_chinensis	RchiOBHm_Chr4g0417331
rosa_laevigata	RLG00000007917
rosa_multiflora	Rmu_ssc0000216.1_g000001
rosa_roxburghii	Rroxscaffold_5G00361090
rosa_rugosa	Rorug04G0146900 Rorug04G0147000
rosa_samantha	Rh4AG210500 Rh4BG211000 Rh4CG221400 Rh4DG208400
rosa_wichuraiana	Rw4G017780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	560
AciI	CCGC	2 cut(s)	14, 411
AclWI	GGATC	3 cut(s)	46, 403, 477
AcsI	RAATTY	2 cut(s)	425, 949
AcuI	CTGAAG	4 cut(s)	263, 774, 795, 927
AfaI	GTAC	2 cut(s)	702, 885
AgsI	TTSAA	5 cut(s)	101, 337, 451, 567, 946
AluBI	AGCT	3 cut(s)	419, 651, 773
AluI	AGCT	3 cut(s)	419, 651, 773
Alw21I	GWGCWC	1 cut(s)	663
Alw26I	GTCTC	1 cut(s)	228
AlwI	GGATC	3 cut(s)	46, 403, 477
ApeKI	GCWGC	1 cut(s)	545
ApoI	RAATTY	2 cut(s)	425, 949
AspS9I	GGNCC	2 cut(s)	205, 474
AsuHPI	GGTGA	2 cut(s)	74, 502
AvaII	GGWCC	2 cut(s)	205, 474
BaeI	ACNNNNGTAYC	2 cut(s)	252, 285
BbsI	GAAGAC	2 cut(s)	325, 471
Bbv12I	GWGCWC	1 cut(s)	663
BbvCI	CCTCAGC	1 cut(s)	415
BbvI	GCAGC	1 cut(s)	557
BccI	CCATC	7 cut(s)	142, 360, 485, 592, 626, 944, 959
BclI	TGATCA	1 cut(s)	64
BcoDI	GTCTC	1 cut(s)	228
BglII	AGATCT	2 cut(s)	680, 899
BisI	GCNGC	2 cut(s)	14, 546
BlsI	GCNGC	2 cut(s)	15, 547
Bme18I	GGWCC	2 cut(s)	205, 474
BmgT120I	GGNCC	2 cut(s)	205, 474
BmiI	GGNNCC	2 cut(s)	206, 475
BmrI	ACTGGG	1 cut(s)	469
BmsI	GCATC	6 cut(s)	10, 526, 532, 739, 770, 834
BmuI	ACTGGG	1 cut(s)	469
BpiI	GAAGAC	2 cut(s)	325, 471
Bpu10I	CCTNAGC	1 cut(s)	415
BsaJI	CCNNGG	1 cut(s)	318
BsaXI	ACNNNNNCTCC	2 cut(s)	315, 345
Bse1I	ACTGG	1 cut(s)	464
Bse3DI	GCAATG	2 cut(s)	255, 309
BseDI	CCNNGG	1 cut(s)	318
BseGI	GGATG	5 cut(s)	25, 49, 157, 517, 918
BseMI	GCAATG	2 cut(s)	255, 309
BseMII	CTCAG	3 cut(s)	180, 429, 888
BseNI	ACTGG	1 cut(s)	464
BseRI	GAGGAG	1 cut(s)	302
BseXI	GCAGC	1 cut(s)	557
BsgI	GTGCAG	1 cut(s)	141
BsiHKAI	GWGCWC	1 cut(s)	663
BslFI	GGGAC	2 cut(s)	288, 487
BsmAI	GTCTC	1 cut(s)	228
BsmBI	CGTCTC	1 cut(s)	228
BsmFI	GGGAC	2 cut(s)	288, 487
Bsp1286I	GDGCHC	1 cut(s)	663
Bsp1407I	TGTACA	1 cut(s)	700
Bsp143I	GATC	9 cut(s)	51, 64, 395, 482, 606, 680, 899, 923, 975
Bsp19I	CCATGG	1 cut(s)	318
BspACI	CCGC	2 cut(s)	14, 411
BspCNI	CTCAG	3 cut(s)	179, 428, 887
BspLI	GGNNCC	2 cut(s)	206, 475
BspPI	GGATC	3 cut(s)	46, 403, 477
BsrDI	GCAATG	2 cut(s)	255, 309
BsrGI	TGTACA	1 cut(s)	700
BsrI	ACTGG	1 cut(s)	464
BssECI	CCNNGG	1 cut(s)	318
BssMI	GATC	9 cut(s)	51, 64, 395, 482, 606, 680, 899, 923, 975
BssNAI	GTATAC	1 cut(s)	561
BssT1I	CCWWGG	1 cut(s)	318
Bst1107I	GTATAC	1 cut(s)	561
Bst4CI	ACNGT	3 cut(s)	268, 665, 718
Bst6I	CTCTTC	1 cut(s)	775
BstAPI	GCANNNNNTGC	1 cut(s)	503
BstAUI	TGTACA	1 cut(s)	700
BstDEI	CTNAG	3 cut(s)	166, 415, 874
BstDSI	CCRYGG	1 cut(s)	318
BstF5I	GGATG	5 cut(s)	25, 49, 157, 517, 918
BstKTI	GATC	9 cut(s)	54, 67, 398, 485, 609, 683, 902, 926, 978
BstMAI	GTCTC	1 cut(s)	228
BstMBI	GATC	9 cut(s)	51, 64, 395, 482, 606, 680, 899, 923, 975
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 503, 758
BstV1I	GCAGC	1 cut(s)	557
BstV2I	GAAGAC	2 cut(s)	325, 471
BstX2I	RGATCY	3 cut(s)	482, 680, 899
BstYI	RGATCY	3 cut(s)	482, 680, 899
BstZ17I	GTATAC	1 cut(s)	561
BtgI	CCRYGG	1 cut(s)	318
BtsCI	GGATG	5 cut(s)	25, 49, 157, 517, 918
BtsIMutI	CAGTG	1 cut(s)	670
Cfr13I	GGNCC	2 cut(s)	205, 474
Csp6I	GTAC	2 cut(s)	701, 884
CviAII	CATG	3 cut(s)	10, 319, 629
CviJI	RGCY	9 cut(s)	159, 164, 293, 419, 440, 553, 651, 773, 893
CviKI_1	RGCY	9 cut(s)	159, 164, 293, 419, 440, 553, 651, 773, 893
CviQI	GTAC	2 cut(s)	701, 884
DdeI	CTNAG	3 cut(s)	166, 415, 874
DpnI	GATC	9 cut(s)	53, 66, 397, 484, 608, 682, 901, 925, 977
DpnII	GATC	9 cut(s)	51, 64, 395, 482, 606, 680, 899, 923, 975
Eam1104I	CTCTTC	1 cut(s)	775
EarI	CTCTTC	1 cut(s)	775
Eco130I	CCWWGG	1 cut(s)	318
Eco47I	GGWCC	2 cut(s)	205, 474
Eco57I	CTGAAG	4 cut(s)	263, 774, 795, 927
EcoO109I	RGGNCCY	1 cut(s)	205
EcoRI	GAATTC	1 cut(s)	425
EcoT14I	CCWWGG	1 cut(s)	318
ErhI	CCWWGG	1 cut(s)	318
Esp3I	CGTCTC	1 cut(s)	228
FaeI	CATG	3 cut(s)	13, 322, 632
FaqI	GGGAC	2 cut(s)	288, 487
FatI	CATG	3 cut(s)	9, 318, 628
FauI	CCCGC	1 cut(s)	418
FbaI	TGATCA	1 cut(s)	64
FblI	GTMKAC	1 cut(s)	560
Fnu4HI	GCNGC	2 cut(s)	14, 546
FokI	GGATG	5 cut(s)	32, 56, 164, 504, 905
Fsp4HI	GCNGC	2 cut(s)	14, 546
GluI	GCNGC	2 cut(s)	14, 546
Hin1II	CATG	3 cut(s)	13, 322, 632
HincII	GTYRAC	1 cut(s)	613
HindII	GTYRAC	1 cut(s)	613
HinfI	GANTC	3 cut(s)	355, 614, 846
HphI	GGTGA	2 cut(s)	74, 502
Hpy166II	GTNNAC	3 cut(s)	561, 613, 703
Hpy188III	TCNNGA	3 cut(s)	337, 567, 684
Hpy8I	GTNNAC	3 cut(s)	561, 613, 703
HpyAV	CCTTC	5 cut(s)	238, 334, 496, 770, 902
HpyCH4III	ACNGT	3 cut(s)	268, 665, 718
HpyCH4V	TGCA	7 cut(s)	23, 122, 383, 545, 825, 842, 869
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 503, 758
HpyF3I	CTNAG	3 cut(s)	166, 415, 874
Hsp92II	CATG	3 cut(s)	13, 322, 632
Ksp22I	TGATCA	1 cut(s)	64
Kzo9I	GATC	9 cut(s)	51, 64, 395, 482, 606, 680, 899, 923, 975
LpnPI	CCDG	8 cut(s)	2, 45, 68, 254, 445, 801, 872, 912
Lsp1109I	GCAGC	1 cut(s)	557
LweI	GCATC	6 cut(s)	10, 526, 532, 739, 770, 834
MalI	GATC	9 cut(s)	53, 66, 397, 484, 608, 682, 901, 925, 977
MboI	GATC	9 cut(s)	51, 64, 395, 482, 606, 680, 899, 923, 975
MboII	GAAGA	7 cut(s)	196, 325, 421, 476, 582, 792, 894
MflI	RGATCY	3 cut(s)	482, 680, 899
MhlI	GDGCHC	1 cut(s)	663
MluCI	AATT	3 cut(s)	425, 795, 949
MlyI	GAGTC	1 cut(s)	608
MmeI	TCCRAC	2 cut(s)	401, 772
MseI	TTAA	3 cut(s)	362, 435, 707
MslI	CAYNNNNRTG	2 cut(s)	323, 719
MwoI	GCNNNNNNNGC	3 cut(s)	10, 503, 758
NcoI	CCATGG	1 cut(s)	318
NdeII	GATC	9 cut(s)	51, 64, 395, 482, 606, 680, 899, 923, 975
NlaIII	CATG	3 cut(s)	13, 322, 632
NlaIV	GGNNCC	2 cut(s)	206, 475
NmeAIII	GCCGAG	1 cut(s)	185
PfeI	GAWTC	2 cut(s)	355, 846
PkrI	GCNGC	2 cut(s)	15, 547
PleI	GAGTC	1 cut(s)	608
PpsI	GAGTC	1 cut(s)	608
PpuMI	RGGWCCY	1 cut(s)	205
Psp5II	RGGWCCY	1 cut(s)	205
PspN4I	GGNNCC	2 cut(s)	206, 475
PspPI	GGNCC	2 cut(s)	205, 474
PspPPI	RGGWCCY	1 cut(s)	205
PsuI	RGATCY	3 cut(s)	482, 680, 899
RsaI	GTAC	2 cut(s)	702, 885
RsaNI	GTAC	2 cut(s)	701, 884
RseI	CAYNNNNRTG	2 cut(s)	323, 719
SaqAI	TTAA	3 cut(s)	362, 435, 707
SatI	GCNGC	2 cut(s)	14, 546
Sau3AI	GATC	9 cut(s)	51, 64, 395, 482, 606, 680, 899, 923, 975
Sau96I	GGNCC	2 cut(s)	205, 474
SchI	GAGTC	1 cut(s)	608
SduI	GDGCHC	1 cut(s)	663
SetI	ASST	6 cut(s)	229, 243, 421, 504, 653, 775
SfaNI	GCATC	6 cut(s)	10, 526, 532, 739, 770, 834
SinI	GGWCC	2 cut(s)	205, 474
SmiMI	CAYNNNNRTG	2 cut(s)	323, 719
Sse9I	AATT	3 cut(s)	425, 795, 949
SsiI	CCGC	2 cut(s)	14, 411
StyI	CCWWGG	1 cut(s)	318
TaaI	ACNGT	3 cut(s)	268, 665, 718
TaqI	TCGA	2 cut(s)	76, 685
TaqII	GACCGA	1 cut(s)	943
TasI	AATT	3 cut(s)	425, 795, 949
TatI	WGTACW	1 cut(s)	700
TauI	GCSGC	1 cut(s)	16
TfiI	GAWTC	2 cut(s)	355, 846
Tru1I	TTAA	3 cut(s)	362, 435, 707
Tru9I	TTAA	3 cut(s)	362, 435, 707
TscAI	CASTG	1 cut(s)	670
TseI	GCWGC	1 cut(s)	545
TspDTI	ATGAA	4 cut(s)	197, 421, 628, 756
TspRI	CASTG	1 cut(s)	670
VpaK11BI	GGWCC	2 cut(s)	205, 474
XapI	RAATTY	2 cut(s)	425, 949
XmiI	GTMKAC	1 cut(s)	560

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.