Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0013381

Physical Location & Seq

Genomic Coordinates Reverse (-)

11852778 .. 11854658

Gene Structure 1881 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g16110.9

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGGACTACTTGGACTACGTTCAAAATCACAGGCAGAGCGGCGCAGATATTACCATTTCTTGTTTACCGATGGATGACAGCCGAGCCTCAGATTTCGGTCTGATGAAGATAGACAAGAAGGGAAGGGTCCTATCATTCAGCGAAAAGCCTAAGGGAAACGACCTGAAGGCAATGGCAATAGATACGACCGTTTTGGGACTTTCGGTGGAGGAAGCTCTGAAGAAACCATACATTGCTTCCATGGGAGTGTATGTCTTCAAGAAGGAGATACTTCTGAATCTCTTAAGATGGCGTTTTCCAACTGCAAATGACTTTGGATCAGAGATAATCCCTGCCTCAGTTAAAGAATTCTTCGTAAAGGCTTATCTCTTCAATGATTACTGGGAAGACATTGGAACCATCCGATCCTTCTTCGAGGCCAACCTTGCCCTCACTGAGCATCCAAATAAGTTTAGCTTCTACAATGCAGCAAAGCCAATGTATACTTCAAGAAGAAACTTGCCTCCGTCGAAGATTGACAACAGCAAGATTGTTGACTCCATCATATCGCATGGAAGTTTCTTAACTGACAGCTTCATAGAGCACAGCGTTGTCGGTATCAGATCGCGAATAAACTCGAACGTTCACTTAAAGGATACAGTAATGCTCGGTGCTGATTACTACGAAACCGATTCTGAGAGAGTGACACTGTTAGCTGAAGGAAGAGTTCCCGTTGGAATTGGAGAGAATACGAAAATCAAAGACTGCATCATCGACAAGAACGCAAGGATCGGGAAGAACGTTGTTATTGCAAACTCAGAGGGCGTGCAGGAAGCTGACAGATCGTCGGAAGGGTTCTACATCCGCTCTGGTATAACCATCGTATTGAAAAATTCGACCATCGTCGACGGACTTGTGATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008878 GO:0009501 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0016740 GO:0016772 GO:0016779 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0070566

KEGG Pathways

Metabolic & Signaling

ko00500 ko00520 ko01100 ko01110 ko02026 map00500 map00520 map01100 map01110 map02026

Pfam Domains

Protein Families

NTP_transferase

Protein Analysis

301

Amino Acids

33.56

Weight (kDa)

6.25

Isoelectric Point (pI)

33.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19220
fragaria_vesca	FvH4_4g14880
malus_domestica	MD13G1186100.v1.1 MD16G1186900.v1.1
prunus_persica	Prupe.1G153700_v2.0.a1
pyrus_communis	pycom13g16110 pycom16g15680
rosa_chinensis	RchiOBHm_Chr4g0417331
rosa_laevigata	RLG00000007917
rosa_multiflora	Rmu_ssc0000216.1_g000001
rosa_roxburghii	Rroxscaffold_5G00361090
rosa_rugosa	Rorug04G0146900 Rorug04G0147000
rosa_samantha	Rh4AG210500 Rh4BG211000 Rh4CG221400 Rh4DG208400
rosa_wichuraiana	Rw4G017780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	39, 846
AccI	GTMKAC	2 cut(s)	482, 885
AccII	CGCG	1 cut(s)	607
AciI	CCGC	2 cut(s)	39, 844
AclI	AACGTT	2 cut(s)	621, 780
AclWI	GGATC	3 cut(s)	325, 399, 776
AcsI	RAATTY	2 cut(s)	347, 871
AcuI	CTGAAG	3 cut(s)	185, 239, 717
AflII	CTTAAG	1 cut(s)	283
AgsI	TTSAA	5 cut(s)	23, 259, 373, 489, 868
AhdI	GACNNNNNGTC	1 cut(s)	823
AjuI	GAANNNNNNNTTGG	2 cut(s)	469, 501
AluBI	AGCT	5 cut(s)	215, 456, 573, 695, 815
AluI	AGCT	5 cut(s)	215, 456, 573, 695, 815
Alw21I	GWGCWC	1 cut(s)	585
AlwI	GGATC	3 cut(s)	325, 399, 776
AoxI	GGCC	1 cut(s)	417
ApeKI	GCWGC	1 cut(s)	467
ApoI	RAATTY	2 cut(s)	347, 871
AspLEI	GCGC	1 cut(s)	44
AspS9I	GGNCC	1 cut(s)	127
AvaII	GGWCC	1 cut(s)	127
AxyI	CCTNAGG	1 cut(s)	150
BaeI	ACNNNNGTAYC	2 cut(s)	174, 207
BarI	GAAGNNNNNNTAC	2 cut(s)	212, 244
BbsI	GAAGAC	2 cut(s)	247, 393
Bbv12I	GWGCWC	1 cut(s)	585
BbvI	GCAGC	1 cut(s)	479
BccI	CCATC	6 cut(s)	64, 282, 407, 548, 866, 887
BciVI	GTATCC	1 cut(s)	628
BfrI	CTTAAG	1 cut(s)	283
BfuI	GTATCC	1 cut(s)	628
BisI	GCNGC	2 cut(s)	40, 468
BlsI	GCNGC	2 cut(s)	41, 469
Bme18I	GGWCC	1 cut(s)	127
BmeRI	GACNNNNNGTC	1 cut(s)	823
BmgT120I	GGNCC	1 cut(s)	127
BmiI	GGNNCC	2 cut(s)	128, 397
BmrI	ACTGGG	1 cut(s)	391
BmsI	GCATC	2 cut(s)	448, 756
BmuI	ACTGGG	1 cut(s)	391
BoxI	GACNNNNGTC	1 cut(s)	881
BpiI	GAAGAC	2 cut(s)	247, 393
BsaJI	CCNNGG	1 cut(s)	240
BsaXI	ACNNNNNCTCC	2 cut(s)	237, 267
Bse1I	ACTGG	1 cut(s)	386
Bse21I	CCTNAGG	1 cut(s)	150
Bse3DI	GCAATG	2 cut(s)	177, 231
BseDI	CCNNGG	1 cut(s)	240
BseGI	GGATG	4 cut(s)	79, 399, 439, 840
BseMI	GCAATG	2 cut(s)	177, 231
BseMII	CTCAG	5 cut(s)	102, 351, 426, 666, 810
BseNI	ACTGG	1 cut(s)	386
BseXI	GCAGC	1 cut(s)	479
BsgI	GTGCAG	1 cut(s)	827
Bsh1236I	CGCG	1 cut(s)	607
Bsh1285I	CGRYCG	1 cut(s)	189
BshFI	GGCC	1 cut(s)	419
BsiEI	CGRYCG	1 cut(s)	189
BsiHKAI	GWGCWC	1 cut(s)	585
BslFI	GGGAC	1 cut(s)	210
BsmFI	GGGAC	1 cut(s)	210
BsnI	GGCC	1 cut(s)	419
Bsp1286I	GDGCHC	1 cut(s)	585
Bsp143I	GATC	6 cut(s)	317, 404, 602, 768, 821, 897
Bsp19I	CCATGG	1 cut(s)	240
Bsp68I	TCGCGA	1 cut(s)	607
BspACI	CCGC	2 cut(s)	39, 844
BspANI	GGCC	1 cut(s)	419
BspCNI	CTCAG	5 cut(s)	101, 350, 427, 667, 809
BspFNI	CGCG	1 cut(s)	607
BspLI	GGNNCC	2 cut(s)	128, 397
BspPI	GGATC	3 cut(s)	325, 399, 776
BspTI	CTTAAG	1 cut(s)	283
BsrBI	CCGCTC	2 cut(s)	39, 846
BsrDI	GCAATG	2 cut(s)	177, 231
BsrI	ACTGG	1 cut(s)	386
BssECI	CCNNGG	1 cut(s)	240
BssMI	GATC	6 cut(s)	317, 404, 602, 768, 821, 897
BssNAI	GTATAC	1 cut(s)	483
BssT1I	CCWWGG	1 cut(s)	240
Bst1107I	GTATAC	1 cut(s)	483
Bst4CI	ACNGT	3 cut(s)	190, 640, 690
Bst6I	CTCTTC	2 cut(s)	374, 697
BstAFI	CTTAAG	1 cut(s)	283
BstC8I	GCNNGC	1 cut(s)	806
BstDEI	CTNAG	6 cut(s)	88, 150, 337, 435, 675, 796
BstDSI	CCRYGG	1 cut(s)	240
BstF5I	GGATG	4 cut(s)	79, 399, 439, 840
BstFNI	CGCG	1 cut(s)	607
BstHHI	GCGC	1 cut(s)	44
BstKTI	GATC	6 cut(s)	320, 407, 605, 771, 824, 900
BstMBI	GATC	6 cut(s)	317, 404, 602, 768, 821, 897
BstMCI	CGRYCG	1 cut(s)	189
BstMWI	GCNNNNNNNGC	1 cut(s)	425
BstPAI	GACNNNNGTC	1 cut(s)	881
BstUI	CGCG	1 cut(s)	607
BstV1I	GCAGC	1 cut(s)	479
BstV2I	GAAGAC	2 cut(s)	247, 393
BstZ17I	GTATAC	1 cut(s)	483
Bsu36I	CCTNAGG	1 cut(s)	150
BsuI	GTATCC	1 cut(s)	628
BsuRI	GGCC	1 cut(s)	419
BtgI	CCRYGG	1 cut(s)	240
BtsCI	GGATG	4 cut(s)	79, 399, 439, 840
BtsIMutI	CAGTG	2 cut(s)	432, 686
BtuMI	TCGCGA	1 cut(s)	607
Cac8I	GCNNGC	1 cut(s)	806
CfoI	GCGC	1 cut(s)	44
Cfr13I	GGNCC	1 cut(s)	127
CviAII	CATG	2 cut(s)	241, 551
DdeI	CTNAG	6 cut(s)	88, 150, 337, 435, 675, 796
DpnI	GATC	6 cut(s)	319, 406, 604, 770, 823, 899
DpnII	GATC	6 cut(s)	317, 404, 602, 768, 821, 897
DriI	GACNNNNNGTC	1 cut(s)	823
Eam1104I	CTCTTC	2 cut(s)	374, 697
Eam1105I	GACNNNNNGTC	1 cut(s)	823
EarI	CTCTTC	2 cut(s)	374, 697
Eco130I	CCWWGG	1 cut(s)	240
Eco47I	GGWCC	1 cut(s)	127
Eco57I	CTGAAG	3 cut(s)	185, 239, 717
Eco81I	CCTNAGG	1 cut(s)	150
EcoO109I	RGGNCCY	1 cut(s)	127
EcoRI	GAATTC	1 cut(s)	347
EcoT14I	CCWWGG	1 cut(s)	240
ErhI	CCWWGG	1 cut(s)	240
FaeI	CATG	2 cut(s)	244, 554
FaiI	YATR	8 cut(s)	229, 242, 252, 483, 545, 552, 578, 854
FalI	AAGNNNNNCTT	2 cut(s)	440, 472
FaqI	GGGAC	1 cut(s)	210
FatI	CATG	2 cut(s)	240, 550
FblI	GTMKAC	2 cut(s)	482, 885
Fnu4HI	GCNGC	2 cut(s)	40, 468
FokI	GGATG	4 cut(s)	86, 386, 426, 827
Fsp4HI	GCNGC	2 cut(s)	40, 468
GlaI	GCGC	1 cut(s)	43
GluI	GCNGC	2 cut(s)	40, 468
HaeIII	GGCC	1 cut(s)	419
HhaI	GCGC	1 cut(s)	44
Hin1II	CATG	2 cut(s)	244, 554
Hin6I	GCGC	1 cut(s)	42
HinP1I	GCGC	1 cut(s)	42
HincII	GTYRAC	2 cut(s)	535, 886
HindII	GTYRAC	2 cut(s)	535, 886
HinfI	GANTC	3 cut(s)	277, 536, 671
Hpy166II	GTNNAC	5 cut(s)	65, 483, 535, 625, 886
Hpy188III	TCNNGA	4 cut(s)	259, 489, 606, 772
Hpy8I	GTNNAC	5 cut(s)	65, 483, 535, 625, 886
Hpy99I	CGWCG	4 cut(s)	511, 829, 887, 890
HpyAV	CCTTC	7 cut(s)	112, 117, 160, 256, 418, 692, 824
HpyCH4III	ACNGT	3 cut(s)	190, 640, 690
HpyCH4IV	ACGT	3 cut(s)	18, 621, 780
HpyCH4V	TGCA	5 cut(s)	305, 467, 747, 791, 808
HpyF10VI	GCNNNNNNNGC	1 cut(s)	425
HpyF3I	CTNAG	6 cut(s)	88, 150, 337, 435, 675, 796
HpySE526I	ACGT	3 cut(s)	18, 621, 780
Hsp92II	CATG	2 cut(s)	244, 554
HspAI	GCGC	1 cut(s)	42
Kzo9I	GATC	6 cut(s)	317, 404, 602, 768, 821, 897
LpnPI	CCDG	6 cut(s)	16, 176, 345, 367, 794, 834
Lsp1109I	GCAGC	1 cut(s)	479
LweI	GCATC	2 cut(s)	448, 756
MaeII	ACGT	3 cut(s)	18, 621, 780
MaeIII	GTNAC	1 cut(s)	682
MalI	GATC	6 cut(s)	319, 406, 604, 770, 823, 899
MbiI	CCGCTC	2 cut(s)	39, 846
MboI	GATC	6 cut(s)	317, 404, 602, 768, 821, 897
MhlI	GDGCHC	1 cut(s)	585
MluCI	AATT	3 cut(s)	347, 717, 871
MlyI	GAGTC	1 cut(s)	530
MmeI	TCCRAC	3 cut(s)	323, 694, 807
MnlI	CCTC	7 cut(s)	97, 202, 346, 409, 440, 513, 793
MseI	TTAA	4 cut(s)	284, 342, 563, 629
MslI	CAYNNNNRTG	1 cut(s)	245
MspCI	CTTAAG	1 cut(s)	283
MvnI	CGCG	1 cut(s)	607
MwoI	GCNNNNNNNGC	1 cut(s)	425
NcoI	CCATGG	1 cut(s)	240
NdeII	GATC	6 cut(s)	317, 404, 602, 768, 821, 897
NlaIII	CATG	2 cut(s)	244, 554
NlaIV	GGNNCC	2 cut(s)	128, 397
NmeAIII	GCCGAG	1 cut(s)	107
NmuCI	GTSAC	1 cut(s)	682
NruI	TCGCGA	1 cut(s)	607
PcsI	WCGNNNNNNNCGW	1 cut(s)	777
PfeI	GAWTC	2 cut(s)	277, 671
PkrI	GCNGC	2 cut(s)	41, 469
PleI	GAGTC	1 cut(s)	530
PpsI	GAGTC	1 cut(s)	530
PpuMI	RGGWCCY	1 cut(s)	127
PshAI	GACNNNNGTC	1 cut(s)	881
Psp1406I	AACGTT	2 cut(s)	621, 780
Psp5II	RGGWCCY	1 cut(s)	127
PspN4I	GGNNCC	2 cut(s)	128, 397
PspPI	GGNCC	1 cut(s)	127
PspPPI	RGGWCCY	1 cut(s)	127
RruI	TCGCGA	1 cut(s)	607
RseI	CAYNNNNRTG	1 cut(s)	245
SalI	GTCGAC	1 cut(s)	884
SaqAI	TTAA	4 cut(s)	284, 342, 563, 629
SatI	GCNGC	2 cut(s)	40, 468
Sau3AI	GATC	6 cut(s)	317, 404, 602, 768, 821, 897
Sau96I	GGNCC	1 cut(s)	127
SchI	GAGTC	1 cut(s)	530
SduI	GDGCHC	1 cut(s)	585
SfaNI	GCATC	2 cut(s)	448, 756
SgrDI	CGTCGACG	1 cut(s)	884
SinI	GGWCC	1 cut(s)	127
SmiMI	CAYNNNNRTG	1 cut(s)	245
SmlI	CTYRAG	1 cut(s)	283
SmoI	CTYRAG	1 cut(s)	283
Sse9I	AATT	3 cut(s)	347, 717, 871
SsiI	CCGC	2 cut(s)	39, 844
StyI	CCWWGG	1 cut(s)	240
TaaI	ACNGT	3 cut(s)	190, 640, 690
TaiI	ACGT	3 cut(s)	21, 624, 783
TaqI	TCGA	6 cut(s)	414, 509, 617, 753, 875, 885
TaqII	GACCGA	1 cut(s)	86
TasI	AATT	3 cut(s)	347, 717, 871
TauI	GCSGC	1 cut(s)	42
TfiI	GAWTC	2 cut(s)	277, 671
Tru1I	TTAA	4 cut(s)	284, 342, 563, 629
Tru9I	TTAA	4 cut(s)	284, 342, 563, 629
TscAI	CASTG	2 cut(s)	439, 693
TseFI	GTSAC	1 cut(s)	682
TseI	GCWGC	1 cut(s)	467
Tsp45I	GTSAC	1 cut(s)	682
TspDTI	ATGAA	2 cut(s)	119, 565
TspGWI	ACGGA	2 cut(s)	495, 903
TspRI	CASTG	2 cut(s)	439, 693
Vha464I	CTTAAG	1 cut(s)	283
VpaK11BI	GGWCC	1 cut(s)	127
XapI	RAATTY	2 cut(s)	347, 871
XmiI	GTMKAC	2 cut(s)	482, 885

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.