Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0013381

Physical Location & Seq

Genomic Coordinates Forward (+)

39942498 .. 39948236

Gene Structure 5739 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G017780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1461 bp

ATGGGGAAGAAGCTGCAGCTGAGTCAGGTTCAGCAAGGAGATGGTAGCATGAAGAATAAGAAGAATGGACATGTTTGTATGTCTCTTACTGCCGCTGATGTAATTGGTGAGGTCAAGTTAAGGGACATGGATGTAGAGAGGCGAAATCCAAAGACCGTCGTTGCAATTATACTGGGAGGTGGAGCTGGTACTCGTCTTTTCCCACTCACCAAACGGCGAGCAAAGCCTGCTGTCCCAATAGGGGGAGCATACAGACTTATTGATGTGCCAATGAGCAACTGCATCAACAGTGGAATCAACAAAGTCTACATCCTCACTCAGTACAACTCAGCATCACTCAACAGGCACATTTCCCGCGCTTACAACTTTGGCAGCGGTACAACATTTGGTGATGGCTACGTAGAGGTTCTAGCTGCTACTCAAACGCCAGGAGAGTCAGGTCAGATGTGGTTCCAGGGCACCGCAGATGCTGTTCGACAGTTCCATTGGCTTTTTGAGGATGCAAGAAGTAGAGACATTGAGGATGTCCTGATTCTATCTGGAGATCACTTGTATCGAATGGACTACATGGACTACATTCAAAATCACCGGGAAAGTGGTGCAGATATTACCATTTCTTGTTTGCCAATGGATGACAGTCGTGCCTCAGATTTTGGTCTGATGAAGATAGACAAGAAAGGAAAAGTCCTCTCGTTCAGTGAAAAGCCTAAAGGAGCTGACCTGAAGGCAATGGCAGTAGATACGACAGTTCTGGGACTTTCTGTGGATGAGGCAGTAAAGAAGCCATACATTGCTTCAATGGGAGTGTACGTCTTCAAGAAGGAGATACTTCTGAATCTTCTAAGATGGCGCTTCCCGACTGCAAATGACTTTGGATCAGAGATTATTCCAGCCTCAGCTAATGAATTTTTCATAAAGGCTTATCTGTTTAATGATTACTGGGAAGACATCGGAACCATCAGATCCTTCTTCGAGGCAAACCTTGCCCTCACTCAGCATCCAAACAAGTTTAGTTTCTATGATGCAGCCAAGCCAATATATACTTCAAGAAGAAACTTACCTCCATCAAAGATTGATGGTAGCAAGATTGTTGACTCCATCATATCGCATGGAAGTTTCTTAACCAATTGCTTTATAGAGCACAGTGTTGTCGGTATCAGATCCCGGATAAACGCAAATGTTCACCTTAAGGACACCGTGATGCTTGGTGCTGATTACTACGAAACCGATTCAGAGGTGGTATCACTGTTAGCTGAAGGAAGAGTTCCCGTTGGAATAGGAGAGAACACAAAAATCAAGGACTGCATTATTGACAAAAACGCTAGAATCGGGAAGAATGTTGTTATTGCAAACACCGAGGGAGTACAAGAGGCTGACAGATCTTCGGAAGGGTTTTACATCCGCTCTGGTGTAACTGTTATATTGAAAAATTCAACTATCCAAGATGGACTTTCGATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008878 GO:0009501 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0016740 GO:0016772 GO:0016779 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0070566

KEGG Pathways

Metabolic & Signaling

ko00500 ko00520 ko01100 ko01110 ko02026 map00500 map00520 map01100 map01110 map02026

Pfam Domains

Protein Families

NTP_transferase

Protein Analysis

486

Amino Acids

53.73

Weight (kDa)

8.09

Isoelectric Point (pI)

35.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NTP_transferase	PF00483	55 - 332	1.5e-69	Nucleotidyl transferase
LbH_GLGC	PF25247	351 - 483	4.4e-50	GLGC left-handed parallel beta-helix domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19220
fragaria_vesca	FvH4_4g14880
malus_domestica	MD13G1186100.v1.1 MD16G1186900.v1.1
prunus_persica	Prupe.1G153700_v2.0.a1
pyrus_communis	pycom13g16110 pycom16g15680
rosa_chinensis	RchiOBHm_Chr4g0417331
rosa_laevigata	RLG00000007917
rosa_multiflora	Rmu_ssc0000216.1_g000001
rosa_roxburghii	Rroxscaffold_5G00361090
rosa_rugosa	Rorug04G0146900 Rorug04G0147000
rosa_samantha	Rh4AG210500 Rh4BG211000 Rh4CG221400 Rh4DG208400
rosa_wichuraiana	Rw4G017780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	458
AccBSI	CCGCTC	1 cut(s)	1404
AccI	GTMKAC	1 cut(s)	306
AccII	CGCG	1 cut(s)	357
AciI	CCGC	5 cut(s)	93, 355, 375, 462, 1402
AclWI	GGATC	3 cut(s)	883, 957, 1155
AcsI	RAATTY	2 cut(s)	905, 1429
AcuI	CTGAAG	2 cut(s)	743, 1275
AfaI	GTAC	5 cut(s)	190, 323, 379, 809, 1365
AfiI	CCNNNNNNNGG	2 cut(s)	241, 242
AflII	CTTAAG	1 cut(s)	1187
AflIII	ACRYGT	1 cut(s)	70
AgsI	TTSAA	6 cut(s)	581, 798, 817, 1047, 1426, 1434
AjnI	CCWGG	2 cut(s)	427, 453
AjuI	GAANNNNNNNTTGG	2 cut(s)	1027, 1059
AluBI	AGCT	7 cut(s)	13, 19, 185, 413, 716, 899, 1253
AluI	AGCT	7 cut(s)	13, 19, 185, 413, 716, 899, 1253
Alw21I	GWGCWC	1 cut(s)	1143
Alw26I	GTCTC	2 cut(s)	87, 507
AlwI	GGATC	3 cut(s)	883, 957, 1155
AlwNI	CAGNNNCTG	1 cut(s)	470
ApeKI	GCWGC	5 cut(s)	13, 16, 372, 413, 1025
ApoI	RAATTY	2 cut(s)	905, 1429
AspLEI	GCGC	2 cut(s)	359, 852
AsuC2I	CCSGG	2 cut(s)	590, 1165
AsuHPI	GGTGA	5 cut(s)	119, 199, 401, 578, 1175
BaeGI	GKGCMC	1 cut(s)	461
BaeI	ACNNNNGTAYC	2 cut(s)	732, 765
BanI	GGYRCC	1 cut(s)	458
BbsI	GAAGAC	2 cut(s)	805, 951
Bbv12I	GWGCWC	1 cut(s)	1143
BbvCI	CCTCAGC	1 cut(s)	895
BbvI	GCAGC	4 cut(s)	28, 384, 400, 1037
BccI	CCATC	8 cut(s)	35, 386, 840, 965, 1070, 1072, 1106, 1439
BceAI	ACGGC	1 cut(s)	230
BciT130I	CCWGG	2 cut(s)	429, 455
BcnI	CCSGG	2 cut(s)	590, 1165
BcoDI	GTCTC	2 cut(s)	87, 507
BfaI	CTAG	2 cut(s)	410, 1323
BfmI	CTRYAG	1 cut(s)	14
BfoI	RGCGCY	1 cut(s)	853
BfrI	CTTAAG	1 cut(s)	1187
BglII	AGATCT	1 cut(s)	1379
BisI	GCNGC	6 cut(s)	14, 17, 93, 373, 414, 1026
BlsI	GCNGC	6 cut(s)	15, 18, 94, 374, 415, 1027
Bme1390I	CCNGG	4 cut(s)	429, 455, 590, 1165
BmiI	GGNNCC	3 cut(s)	452, 460, 955
BmrFI	CCNGG	4 cut(s)	429, 455, 590, 1165
BmrI	ACTGGG	2 cut(s)	182, 949
BmsI	GCATC	7 cut(s)	291, 341, 457, 490, 1006, 1012, 1191
BmuI	ACTGGG	2 cut(s)	182, 949
BpiI	GAAGAC	2 cut(s)	805, 951
BpmI	CTGGAG	1 cut(s)	561
Bpu10I	CCTNAGC	1 cut(s)	895
BpuMI	CCSGG	2 cut(s)	590, 1165
BsaAI	YACGTR	1 cut(s)	400
BsaJI	CCNNGG	2 cut(s)	454, 1356
BsaXI	ACNNNNNCTCC	2 cut(s)	795, 825
Bsc4I	CCNNNNNNNGG	2 cut(s)	241, 242
Bse1I	ACTGG	2 cut(s)	177, 944
Bse3DI	GCAATG	2 cut(s)	735, 789
BseBI	CCWGG	2 cut(s)	429, 455
BseDI	CCNNGG	2 cut(s)	454, 1356
BseGI	GGATG	8 cut(s)	136, 309, 505, 529, 637, 772, 997, 1398
BseLI	CCNNNNNNNGG	2 cut(s)	241, 242
BseMI	GCAATG	2 cut(s)	735, 789
BseMII	CTCAG	6 cut(s)	11, 332, 342, 660, 909, 1007
BseNI	ACTGG	2 cut(s)	177, 944
BseSI	GKGCMC	1 cut(s)	461
BseXI	GCAGC	4 cut(s)	28, 384, 400, 1037
BsgI	GTGCAG	1 cut(s)	621
Bsh1236I	CGCG	1 cut(s)	357
BshNI	GGYRCC	1 cut(s)	458
BsiHKAI	GWGCWC	1 cut(s)	1143
BsiSI	CCGG	2 cut(s)	589, 1165
BslFI	GGGAC	3 cut(s)	137, 218, 768
BslI	CCNNNNNNNGG	2 cut(s)	241, 242
BsmAI	GTCTC	2 cut(s)	87, 507
BsmFI	GGGAC	3 cut(s)	137, 218, 768
Bsp1286I	GDGCHC	2 cut(s)	461, 1143
Bsp143I	GATC	6 cut(s)	544, 875, 962, 1160, 1379, 1455
BspACI	CCGC	5 cut(s)	93, 355, 375, 462, 1402
BspCNI	CTCAG	6 cut(s)	12, 331, 341, 659, 908, 1006
BspFNI	CGCG	1 cut(s)	357
BspLI	GGNNCC	3 cut(s)	452, 460, 955
BspMAI	CTGCAG	1 cut(s)	18
BspPI	GGATC	3 cut(s)	883, 957, 1155
BspT107I	GGYRCC	1 cut(s)	458
BspTI	CTTAAG	1 cut(s)	1187
BsrBI	CCGCTC	1 cut(s)	1404
BsrDI	GCAATG	2 cut(s)	735, 789
BsrI	ACTGG	2 cut(s)	177, 944
BssECI	CCNNGG	2 cut(s)	454, 1356
BssMI	GATC	6 cut(s)	544, 875, 962, 1160, 1379, 1455
Bst2UI	CCWGG	2 cut(s)	429, 455
Bst4CI	ACNGT	9 cut(s)	157, 290, 480, 638, 748, 1145, 1198, 1248, 1417
Bst6I	CTCTTC	1 cut(s)	1255
BstAFI	CTTAAG	1 cut(s)	1187
BstAPI	GCANNNNNTGC	2 cut(s)	227, 983
BstBAI	YACGTR	1 cut(s)	400
BstC8I	GCNNGC	2 cut(s)	219, 228
BstDEI	CTNAG	7 cut(s)	20, 318, 328, 646, 842, 895, 993
BstF5I	GGATG	8 cut(s)	136, 309, 505, 529, 637, 772, 997, 1398
BstFNI	CGCG	1 cut(s)	357
BstH2I	RGCGCY	1 cut(s)	853
BstHHI	GCGC	2 cut(s)	359, 852
BstKTI	GATC	6 cut(s)	547, 878, 965, 1163, 1382, 1458
BstMAI	GTCTC	2 cut(s)	87, 507
BstMBI	GATC	6 cut(s)	544, 875, 962, 1160, 1379, 1455
BstMWI	GCNNNNNNNGC	3 cut(s)	223, 227, 983
BstNI	CCWGG	2 cut(s)	429, 455
BstNSI	RCATGY	1 cut(s)	74
BstSCI	CCNGG	4 cut(s)	427, 453, 588, 1163
BstSFI	CTRYAG	1 cut(s)	14
BstSLI	GKGCMC	1 cut(s)	461
BstSNI	TACGTA	1 cut(s)	400
BstUI	CGCG	1 cut(s)	357
BstV1I	GCAGC	4 cut(s)	28, 384, 400, 1037
BstV2I	GAAGAC	2 cut(s)	805, 951
BstX2I	RGATCY	3 cut(s)	962, 1160, 1379
BstYI	RGATCY	3 cut(s)	962, 1160, 1379
BtsCI	GGATG	8 cut(s)	136, 309, 505, 529, 637, 772, 997, 1398
BtsIMutI	CAGTG	4 cut(s)	295, 703, 1150, 1244
Cac8I	GCNNGC	2 cut(s)	219, 228
CaiI	CAGNNNCTG	1 cut(s)	470
CfoI	GCGC	2 cut(s)	359, 852
Csp6I	GTAC	5 cut(s)	189, 322, 378, 808, 1364
CviAII	CATG	5 cut(s)	49, 71, 127, 568, 1109
CviQI	GTAC	5 cut(s)	189, 322, 378, 808, 1364
DdeI	CTNAG	7 cut(s)	20, 318, 328, 646, 842, 895, 993
DpnI	GATC	6 cut(s)	546, 877, 964, 1162, 1381, 1457
DpnII	GATC	6 cut(s)	544, 875, 962, 1160, 1379, 1455
Eam1104I	CTCTTC	1 cut(s)	1255
EarI	CTCTTC	1 cut(s)	1255
Eco105I	TACGTA	1 cut(s)	400
Eco57I	CTGAAG	2 cut(s)	743, 1275
EcoRII	CCWGG	2 cut(s)	427, 453
FaeI	CATG	5 cut(s)	52, 74, 130, 571, 1112
FalI	AAGNNNNNCTT	1 cut(s)	1434
FaqI	GGGAC	3 cut(s)	137, 218, 768
FatI	CATG	5 cut(s)	48, 70, 126, 567, 1108
FauI	CCCGC	1 cut(s)	362
FblI	GTMKAC	1 cut(s)	306
Fnu4HI	GCNGC	6 cut(s)	14, 17, 93, 373, 414, 1026
FokI	GGATG	8 cut(s)	143, 296, 512, 536, 644, 779, 984, 1385
Fsp4HI	GCNGC	6 cut(s)	14, 17, 93, 373, 414, 1026
FspBI	CTAG	2 cut(s)	410, 1323
GlaI	GCGC	2 cut(s)	358, 851
GluI	GCNGC	6 cut(s)	14, 17, 93, 373, 414, 1026
GsuI	CTGGAG	1 cut(s)	561
HaeII	RGCGCY	1 cut(s)	853
HapII	CCGG	2 cut(s)	589, 1165
HhaI	GCGC	2 cut(s)	359, 852
Hin1II	CATG	5 cut(s)	52, 74, 130, 571, 1112
Hin6I	GCGC	2 cut(s)	357, 850
HinP1I	GCGC	2 cut(s)	357, 850
HincII	GTYRAC	1 cut(s)	1093
HindII	GTYRAC	1 cut(s)	1093
HinfI	GANTC	8 cut(s)	22, 294, 434, 532, 835, 1094, 1229, 1326
HpaII	CCGG	2 cut(s)	589, 1165
HphI	GGTGA	5 cut(s)	119, 199, 401, 578, 1175
Hpy166II	GTNNAC	4 cut(s)	307, 808, 1093, 1183
Hpy188III	TCNNGA	6 cut(s)	529, 540, 817, 856, 1047, 1330
Hpy8I	GTNNAC	4 cut(s)	307, 808, 1093, 1183
Hpy99I	CGWCG	1 cut(s)	161
HpyAV	CCTTC	5 cut(s)	718, 814, 976, 1250, 1382
HpyCH4III	ACNGT	9 cut(s)	157, 290, 480, 638, 748, 1145, 1198, 1248, 1417
HpyCH4IV	ACGT	2 cut(s)	399, 810
HpyCH4V	TGCA	9 cut(s)	16, 164, 282, 503, 602, 863, 1025, 1305, 1349
HpyF10VI	GCNNNNNNNGC	3 cut(s)	223, 227, 983
HpyF3I	CTNAG	7 cut(s)	20, 318, 328, 646, 842, 895, 993
HpySE526I	ACGT	2 cut(s)	399, 810
Hsp92II	CATG	5 cut(s)	52, 74, 130, 571, 1112
HspAI	GCGC	2 cut(s)	357, 850
Kzo9I	GATC	6 cut(s)	544, 875, 962, 1160, 1379, 1455
LmnI	GCTCC	3 cut(s)	182, 245, 713
Lsp1109I	GCAGC	4 cut(s)	28, 384, 400, 1037
LweI	GCATC	7 cut(s)	291, 341, 457, 490, 1006, 1012, 1191
MaeI	CTAG	2 cut(s)	410, 1323
MaeII	ACGT	2 cut(s)	399, 810
MaeIII	GTNAC	1 cut(s)	1411
MalI	GATC	6 cut(s)	546, 877, 964, 1162, 1381, 1457
MbiI	CCGCTC	1 cut(s)	1404
MboI	GATC	6 cut(s)	544, 875, 962, 1160, 1379, 1455
MfeI	CAATTG	1 cut(s)	1126
MflI	RGATCY	3 cut(s)	962, 1160, 1379
MhlI	GDGCHC	2 cut(s)	461, 1143
MluCI	AATT	5 cut(s)	102, 165, 905, 1126, 1429
MlyI	GAGTC	3 cut(s)	31, 443, 1088
MmeI	TCCRAC	1 cut(s)	1252
MseI	TTAA	4 cut(s)	119, 930, 1121, 1188
MslI	CAYNNNNRTG	1 cut(s)	1199
MspA1I	CMGCKG	3 cut(s)	19, 95, 375
MspCI	CTTAAG	1 cut(s)	1187
MspI	CCGG	2 cut(s)	589, 1165
MspR9I	CCNGG	4 cut(s)	429, 455, 590, 1165
MunI	CAATTG	1 cut(s)	1126
MvaI	CCWGG	2 cut(s)	429, 455
MvnI	CGCG	1 cut(s)	357
MwoI	GCNNNNNNNGC	3 cut(s)	223, 227, 983
NciI	CCSGG	2 cut(s)	590, 1165
NdeII	GATC	6 cut(s)	544, 875, 962, 1160, 1379, 1455
NlaIII	CATG	5 cut(s)	52, 74, 130, 571, 1112
NlaIV	GGNNCC	3 cut(s)	452, 460, 955
NspI	RCATGY	1 cut(s)	74
PciI	ACATGT	1 cut(s)	70
PfeI	GAWTC	5 cut(s)	294, 532, 835, 1229, 1326
PfoI	TCCNGGA	1 cut(s)	1163
PkrI	GCNGC	6 cut(s)	15, 18, 94, 374, 415, 1027
PleI	GAGTC	3 cut(s)	30, 442, 1088
PpsI	GAGTC	3 cut(s)	30, 442, 1088
Ppu21I	YACGTR	1 cut(s)	400
PscI	ACATGT	1 cut(s)	70
Psp6I	CCWGG	2 cut(s)	427, 453
PspGI	CCWGG	2 cut(s)	427, 453
PspN4I	GGNNCC	3 cut(s)	452, 460, 955
PstI	CTGCAG	1 cut(s)	18
PstNI	CAGNNNCTG	1 cut(s)	470
PsuI	RGATCY	3 cut(s)	962, 1160, 1379
PvuII	CAGCTG	1 cut(s)	19
RsaI	GTAC	5 cut(s)	190, 323, 379, 809, 1365
RsaNI	GTAC	5 cut(s)	189, 322, 378, 808, 1364
RseI	CAYNNNNRTG	1 cut(s)	1199
SaqAI	TTAA	4 cut(s)	119, 930, 1121, 1188
SatI	GCNGC	6 cut(s)	14, 17, 93, 373, 414, 1026
Sau3AI	GATC	6 cut(s)	544, 875, 962, 1160, 1379, 1455
SchI	GAGTC	3 cut(s)	31, 443, 1088
ScrFI	CCNGG	4 cut(s)	429, 455, 590, 1165
SduI	GDGCHC	2 cut(s)	461, 1143
SfaNI	GCATC	7 cut(s)	291, 341, 457, 490, 1006, 1012, 1191
SfcI	CTRYAG	1 cut(s)	14
SmiMI	CAYNNNNRTG	1 cut(s)	1199
SmlI	CTYRAG	1 cut(s)	1187
SmoI	CTYRAG	1 cut(s)	1187
SnaBI	TACGTA	1 cut(s)	400
Sse9I	AATT	5 cut(s)	102, 165, 905, 1126, 1429
SsiI	CCGC	5 cut(s)	93, 355, 375, 462, 1402
SspMI	CTAG	2 cut(s)	410, 1323
StyD4I	CCNGG	4 cut(s)	427, 453, 588, 1163
TaaI	ACNGT	9 cut(s)	157, 290, 480, 638, 748, 1145, 1198, 1248, 1417
TaiI	ACGT	2 cut(s)	402, 813
TaqI	TCGA	4 cut(s)	475, 556, 972, 1454
TasI	AATT	5 cut(s)	102, 165, 905, 1126, 1429
TatI	WGTACW	2 cut(s)	321, 1363
TauI	GCSGC	1 cut(s)	95
TfiI	GAWTC	5 cut(s)	294, 532, 835, 1229, 1326
Tru1I	TTAA	4 cut(s)	119, 930, 1121, 1188
Tru9I	TTAA	4 cut(s)	119, 930, 1121, 1188
TscAI	CASTG	4 cut(s)	295, 703, 1150, 1251
TseI	GCWGC	5 cut(s)	13, 16, 372, 413, 1025
TspDTI	ATGAA	4 cut(s)	65, 677, 901, 918
TspRI	CASTG	4 cut(s)	295, 703, 1150, 1251
Vha464I	CTTAAG	1 cut(s)	1187
XapI	RAATTY	2 cut(s)	905, 1429
XceI	RCATGY	1 cut(s)	74
XmiI	GTMKAC	1 cut(s)	306
XspI	CTAG	2 cut(s)	410, 1323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.