Rh4AG210500

This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP- glucose from Glc-1-P and ATP

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
Physical Location & Seq
Forward (+)
50354109 .. 50359488
5380 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG210500.1

Sequence Viewer

Length: 1473 bp
ATGGCAGTGTCGGCCGATCATTGCCGGATTTCCCTCTCCGCTGCCATCCAGTCACGTGGCACAGCGGGGCTGGCGGGGAGGAATCCGAGGGGGCTTGTGAAGTTTTGCAATGGAGAAGTGATGGGGAAGAAGCTGCAGCTGAGTCAGGTTCAGCAAGGGGGTGGTAGCATGAAGAATAAGAAGAATGGACATGTTTGTATGTCTCTTACTGCCGCTGATGTAATTGGTGAGGTCAAGTTAAGGGACATGGATGTAGAGAGGCGAAATCCAAAGACCGTCGTTGCAATTATACTGGGAGGTGGAGCTGGTACTCGTCTTTTCCCACTCACCAAACGGCGAGCAAAGCCTGCTGTCCCAATAGGGGGAGCATACAGACTTATTGATGTGCCAATGAGCAACTGCATCAACAGTGGAATCAACAAAGTCTACATCCTCACTCAGTACAACTCAGCATCACTCAACAGGCACATTTCCCGCGCTTACAACTTTGGCAGCGGTACAACATTTGGTGATGGCTACGTAGAGGTTCTAGCTGCTACTCAAACGCCAGGAGAGTCAGGTCAGATGTGGTTCCAGGGCACCGCAGATGCTGTTCGACAGTTCCATTGGCTTTTTGAGGATGCAAGAAGTAGAGACATTGAGGATGTCCTGATTCTATCTGGAGATCACTTGTATCGAATGGACTACATGGACTACATTCAAAATCACCGGGAAAGTGGTGCAGATATTACCATTTCTTGTTTGCCAATGGATGACAGTCGTGCCTCAGATTTTGGTCTGATGAAGATAGACAAGAAAGGAAAGGTCCTCTCGTTCAGTGAAAAGCCTAAAGGAGCTGACCTGAAGGCAATGGCAGTAGATACGACAGTTCTGGGACTTTCTGTGGATGAGGCAGTAAAGAAGCCATACATTGCTTCAATGGGAGTGTACGTCTTCAAGAAGGAGATACTTCTGAATCTTTTAAGATGGCGCTTCCCGACTGCAAATGACTTTGGATCAGAGATTATTCCAGCCTCAGCTAATGAATTTTTCATAAAGGCTTATCTGTTTAATGATTACTGGGAAGACATCGGAACCATCAGATCCTTCTTCGAGGCAAACCTTGCCCTCACTCAGCATCCAAACAAGTTTAGTTTCTATGATGCAGCAAAGCCAATGTATACTTCAAGAAGAAACTTACCTCCATCAAAGATTGATGGTAGCAAGATTGTTGACTCCATCATATCGCATGGAAGTTTCTTAACCAATTGCTTTATAGAGCACAGTGTTGTCGGTATCAGATCCCGGATAAACGCAAATGTTCACCTTAAGGACACCGTGATGCTTGGTGCTGATTACTACGAAACCGATTCAGAGGTGGTATCACTGTTAGCTGAAGGAAGAGTTCCCGTTGGAATAGGAGAGAACACAAAAATCAAGGAGTACAAGAGGCTGACAGATCTTCGGAAGGGTTTTACATCCGCTCTGGTGTAA

Protein Analysis

490

Amino Acids

54.08

Weight (kDa)

9.04

Isoelectric Point (pI)

33.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NTP_transferase PF00483 95 - 372 1.6e-69 Nucleotidyl transferase
LbH_GLGC PF25247 391 - 474 6.3e-27 GLGC left-handed parallel beta-helix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013381)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 578
AccBSI CCGCTC 1 cut(s) 1463
AccI GTMKAC 2 cut(s) 426, 1160
AccII CGCG 1 cut(s) 477
AciI CCGC 8 cut(s) 39, 65, 74, 213, 475, 495, 582, 1461
AclWI GGATC 3 cut(s) 1003, 1077, 1275
AcoI YGGCCR 1 cut(s) 12
AcsI RAATTY 1 cut(s) 1025
AcuI CTGAAG 2 cut(s) 863, 1395
AcvI CACGTG 1 cut(s) 56
AfaI GTAC 5 cut(s) 310, 443, 499, 929, 1424
AfiI CCNNNNNNNGG 2 cut(s) 361, 362
AflII CTTAAG 1 cut(s) 1307
AflIII ACRYGT 1 cut(s) 190
AgsI TTSAA 4 cut(s) 701, 918, 937, 1167
AjnI CCWGG 2 cut(s) 547, 573
AjuI GAANNNNNNNTTGG 2 cut(s) 1147, 1179
AluBI AGCT 7 cut(s) 133, 139, 305, 533, 836, 1019, 1373
AluI AGCT 7 cut(s) 133, 139, 305, 533, 836, 1019, 1373
Alw21I GWGCWC 1 cut(s) 1263
Alw26I GTCTC 2 cut(s) 207, 627
AlwI GGATC 3 cut(s) 1003, 1077, 1275
AlwNI CAGNNNCTG 1 cut(s) 590
AoxI GGCC 1 cut(s) 12
ApeKI GCWGC 6 cut(s) 41, 133, 136, 492, 533, 1145
ApoI RAATTY 1 cut(s) 1025
AspLEI GCGC 2 cut(s) 479, 972
AspS9I GGNCC 1 cut(s) 805
AsuC2I CCSGG 2 cut(s) 710, 1285
AsuHPI GGTGA 5 cut(s) 239, 319, 521, 698, 1295
AvaII GGWCC 1 cut(s) 805
BaeGI GKGCMC 1 cut(s) 581
BaeI ACNNNNGTAYC 2 cut(s) 852, 885
BanI GGYRCC 1 cut(s) 578
BbrPI CACGTG 1 cut(s) 56
BbsI GAAGAC 2 cut(s) 925, 1071
Bbv12I GWGCWC 1 cut(s) 1263
BbvCI CCTCAGC 1 cut(s) 1015
BbvI GCAGC 6 cut(s) 28, 120, 148, 504, 520, 1157
BccI CCATC 8 cut(s) 53, 115, 506, 960, 1085, 1190, 1192, 1226
BceAI ACGGC 1 cut(s) 350
BciT130I CCWGG 2 cut(s) 549, 575
BcnI CCSGG 2 cut(s) 710, 1285
BcoDI GTCTC 2 cut(s) 207, 627
BfaI CTAG 1 cut(s) 530
BfmI CTRYAG 1 cut(s) 134
BfoI RGCGCY 1 cut(s) 973
BfrI CTTAAG 1 cut(s) 1307
BglII AGATCT 1 cut(s) 1438
BisI GCNGC 7 cut(s) 42, 134, 137, 213, 493, 534, 1146
BlsI GCNGC 7 cut(s) 43, 135, 138, 214, 494, 535, 1147
Bme1390I CCNGG 4 cut(s) 549, 575, 710, 1285
Bme18I GGWCC 1 cut(s) 805
BmgT120I GGNCC 1 cut(s) 805
BmiI GGNNCC 3 cut(s) 572, 580, 1075
BmrFI CCNGG 4 cut(s) 549, 575, 710, 1285
BmrI ACTGGG 2 cut(s) 302, 1069
BmsI GCATC 7 cut(s) 411, 461, 577, 610, 1126, 1132, 1311
BmuI ACTGGG 2 cut(s) 302, 1069
BpiI GAAGAC 2 cut(s) 925, 1071
BpmI CTGGAG 1 cut(s) 681
Bpu10I CCTNAGC 1 cut(s) 1015
BpuMI CCSGG 2 cut(s) 710, 1285
BsaAI YACGTR 2 cut(s) 56, 520
BsaJI CCNNGG 2 cut(s) 86, 574
BsaXI ACNNNNNCTCC 2 cut(s) 915, 945
Bsc4I CCNNNNNNNGG 2 cut(s) 361, 362
Bse1I ACTGG 3 cut(s) 49, 297, 1064
Bse3DI GCAATG 4 cut(s) 19, 115, 855, 909
BseBI CCWGG 2 cut(s) 549, 575
BseDI CCNNGG 2 cut(s) 86, 574
BseGI GGATG 9 cut(s) 45, 256, 429, 625, 649, 757, 892, 1117, 1457
BseLI CCNNNNNNNGG 2 cut(s) 361, 362
BseMI GCAATG 4 cut(s) 19, 115, 855, 909
BseMII CTCAG 6 cut(s) 131, 452, 462, 780, 1029, 1127
BseNI ACTGG 3 cut(s) 49, 297, 1064
BseSI GKGCMC 1 cut(s) 581
BseX3I CGGCCG 1 cut(s) 12
BseXI GCAGC 6 cut(s) 28, 120, 148, 504, 520, 1157
BsgI GTGCAG 1 cut(s) 741
Bsh1236I CGCG 1 cut(s) 477
Bsh1285I CGRYCG 1 cut(s) 15
BshFI GGCC 1 cut(s) 14
BshNI GGYRCC 1 cut(s) 578
BsiEI CGRYCG 1 cut(s) 15
BsiHKAI GWGCWC 1 cut(s) 1263
BsiSI CCGG 3 cut(s) 25, 709, 1285
BslFI GGGAC 3 cut(s) 257, 338, 888
BslI CCNNNNNNNGG 2 cut(s) 361, 362
BsmAI GTCTC 2 cut(s) 207, 627
BsmFI GGGAC 3 cut(s) 257, 338, 888
BsnI GGCC 1 cut(s) 14
Bsp1286I GDGCHC 2 cut(s) 581, 1263
Bsp143I GATC 6 cut(s) 16, 664, 995, 1082, 1280, 1438
BspACI CCGC 8 cut(s) 39, 65, 74, 213, 475, 495, 582, 1461
BspANI GGCC 1 cut(s) 14
BspCNI CTCAG 6 cut(s) 132, 451, 461, 779, 1028, 1126
BspFNI CGCG 1 cut(s) 477
BspLI GGNNCC 3 cut(s) 572, 580, 1075
BspMAI CTGCAG 1 cut(s) 138
BspPI GGATC 3 cut(s) 1003, 1077, 1275
BspT107I GGYRCC 1 cut(s) 578
BspTI CTTAAG 1 cut(s) 1307
BsrBI CCGCTC 1 cut(s) 1463
BsrDI GCAATG 4 cut(s) 19, 115, 855, 909
BsrI ACTGG 3 cut(s) 49, 297, 1064
BssECI CCNNGG 2 cut(s) 86, 574
BssMI GATC 6 cut(s) 16, 664, 995, 1082, 1280, 1438
BssNAI GTATAC 1 cut(s) 1161
Bst1107I GTATAC 1 cut(s) 1161
Bst2UI CCWGG 2 cut(s) 549, 575
Bst4CI ACNGT 8 cut(s) 277, 410, 600, 758, 868, 1265, 1318, 1368
Bst6I CTCTTC 1 cut(s) 1375
BstAFI CTTAAG 1 cut(s) 1307
BstAPI GCANNNNNTGC 2 cut(s) 347, 1103
BstBAI YACGTR 2 cut(s) 56, 520
BstC8I GCNNGC 3 cut(s) 72, 339, 348
BstDEI CTNAG 6 cut(s) 140, 438, 448, 766, 1015, 1113
BstF5I GGATG 9 cut(s) 45, 256, 429, 625, 649, 757, 892, 1117, 1457
BstFNI CGCG 1 cut(s) 477
BstH2I RGCGCY 1 cut(s) 973
BstHHI GCGC 2 cut(s) 479, 972
BstKTI GATC 6 cut(s) 19, 667, 998, 1085, 1283, 1441
BstMAI GTCTC 2 cut(s) 207, 627
BstMBI GATC 6 cut(s) 16, 664, 995, 1082, 1280, 1438
BstMCI CGRYCG 1 cut(s) 15
BstMWI GCNNNNNNNGC 5 cut(s) 11, 71, 343, 347, 1103
BstNI CCWGG 2 cut(s) 549, 575
BstNSI RCATGY 1 cut(s) 194
BstSCI CCNGG 4 cut(s) 547, 573, 708, 1283
BstSFI CTRYAG 1 cut(s) 134
BstSLI GKGCMC 1 cut(s) 581
BstSNI TACGTA 1 cut(s) 520
BstUI CGCG 1 cut(s) 477
BstV1I GCAGC 6 cut(s) 28, 120, 148, 504, 520, 1157
BstV2I GAAGAC 2 cut(s) 925, 1071
BstX2I RGATCY 3 cut(s) 1082, 1280, 1438
BstXI CCANNNNNNTGG 1 cut(s) 56
BstYI RGATCY 3 cut(s) 1082, 1280, 1438
BstZ17I GTATAC 1 cut(s) 1161
BstZI CGGCCG 1 cut(s) 12
BsuRI GGCC 1 cut(s) 14
BtsCI GGATG 9 cut(s) 45, 256, 429, 625, 649, 757, 892, 1117, 1457
BtsI GCAGTG 1 cut(s) 12
BtsIMutI CAGTG 5 cut(s) 12, 415, 823, 1270, 1364
Cac8I GCNNGC 3 cut(s) 72, 339, 348
CaiI CAGNNNCTG 1 cut(s) 590
CfoI GCGC 2 cut(s) 479, 972
Cfr13I GGNCC 1 cut(s) 805
Csp6I GTAC 5 cut(s) 309, 442, 498, 928, 1423
CviAII CATG 5 cut(s) 169, 191, 247, 688, 1229
CviQI GTAC 5 cut(s) 309, 442, 498, 928, 1423
DdeI CTNAG 6 cut(s) 140, 438, 448, 766, 1015, 1113
DpnI GATC 6 cut(s) 18, 666, 997, 1084, 1282, 1440
DpnII GATC 6 cut(s) 16, 664, 995, 1082, 1280, 1438
EaeI YGGCCR 1 cut(s) 12
EagI CGGCCG 1 cut(s) 12
Eam1104I CTCTTC 1 cut(s) 1375
EarI CTCTTC 1 cut(s) 1375
EclXI CGGCCG 1 cut(s) 12
Eco105I TACGTA 1 cut(s) 520
Eco47I GGWCC 1 cut(s) 805
Eco52I CGGCCG 1 cut(s) 12
Eco57I CTGAAG 2 cut(s) 863, 1395
Eco72I CACGTG 1 cut(s) 56
EcoO109I RGGNCCY 1 cut(s) 805
EcoRII CCWGG 2 cut(s) 547, 573
FaeI CATG 5 cut(s) 172, 194, 250, 691, 1232
FaqI GGGAC 3 cut(s) 257, 338, 888
FatI CATG 5 cut(s) 168, 190, 246, 687, 1228
FauI CCCGC 3 cut(s) 58, 67, 482
FblI GTMKAC 2 cut(s) 426, 1160
Fnu4HI GCNGC 7 cut(s) 42, 134, 137, 213, 493, 534, 1146
FokI GGATG 9 cut(s) 32, 263, 416, 632, 656, 764, 899, 1104, 1444
Fsp4HI GCNGC 7 cut(s) 42, 134, 137, 213, 493, 534, 1146
FspBI CTAG 1 cut(s) 530
GlaI GCGC 2 cut(s) 478, 971
GluI GCNGC 7 cut(s) 42, 134, 137, 213, 493, 534, 1146
GsuI CTGGAG 1 cut(s) 681
HaeII RGCGCY 1 cut(s) 973
HaeIII GGCC 1 cut(s) 14
HapII CCGG 3 cut(s) 25, 709, 1285
HhaI GCGC 2 cut(s) 479, 972
Hin1II CATG 5 cut(s) 172, 194, 250, 691, 1232
Hin6I GCGC 2 cut(s) 477, 970
HinP1I GCGC 2 cut(s) 477, 970
HincII GTYRAC 1 cut(s) 1213
HindII GTYRAC 1 cut(s) 1213
HinfI GANTC 8 cut(s) 82, 142, 414, 554, 652, 955, 1214, 1349
HpaII CCGG 3 cut(s) 25, 709, 1285
HphI GGTGA 5 cut(s) 239, 319, 521, 698, 1295
Hpy166II GTNNAC 5 cut(s) 427, 928, 1161, 1213, 1303
Hpy188III TCNNGA 5 cut(s) 649, 660, 937, 976, 1167
Hpy8I GTNNAC 5 cut(s) 427, 928, 1161, 1213, 1303
Hpy99I CGWCG 1 cut(s) 281
HpyAV CCTTC 5 cut(s) 838, 934, 1096, 1370, 1441
HpyCH4III ACNGT 8 cut(s) 277, 410, 600, 758, 868, 1265, 1318, 1368
HpyCH4IV ACGT 3 cut(s) 55, 519, 930
HpyCH4V TGCA 8 cut(s) 108, 136, 284, 402, 623, 722, 983, 1145
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 71, 343, 347, 1103
HpyF3I CTNAG 6 cut(s) 140, 438, 448, 766, 1015, 1113
HpySE526I ACGT 3 cut(s) 55, 519, 930
Hsp92II CATG 5 cut(s) 172, 194, 250, 691, 1232
HspAI GCGC 2 cut(s) 477, 970
Kzo9I GATC 6 cut(s) 16, 664, 995, 1082, 1280, 1438
LmnI GCTCC 3 cut(s) 302, 365, 833
Lsp1109I GCAGC 6 cut(s) 28, 120, 148, 504, 520, 1157
LweI GCATC 7 cut(s) 411, 461, 577, 610, 1126, 1132, 1311
MaeI CTAG 1 cut(s) 530
MaeII ACGT 3 cut(s) 55, 519, 930
MaeIII GTNAC 1 cut(s) 51
MalI GATC 6 cut(s) 18, 666, 997, 1084, 1282, 1440
MbiI CCGCTC 1 cut(s) 1463
MboI GATC 6 cut(s) 16, 664, 995, 1082, 1280, 1438
MfeI CAATTG 1 cut(s) 1246
MflI RGATCY 3 cut(s) 1082, 1280, 1438
MhlI GDGCHC 2 cut(s) 581, 1263
MluCI AATT 4 cut(s) 222, 285, 1025, 1246
MlyI GAGTC 3 cut(s) 151, 563, 1208
MmeI TCCRAC 1 cut(s) 1372
MseI TTAA 5 cut(s) 239, 962, 1050, 1241, 1308
MslI CAYNNNNRTG 1 cut(s) 1319
MspA1I CMGCKG 5 cut(s) 41, 65, 139, 215, 495
MspCI CTTAAG 1 cut(s) 1307
MspI CCGG 3 cut(s) 25, 709, 1285
MspR9I CCNGG 4 cut(s) 549, 575, 710, 1285
MunI CAATTG 1 cut(s) 1246
MvaI CCWGG 2 cut(s) 549, 575
MvnI CGCG 1 cut(s) 477
MwoI GCNNNNNNNGC 5 cut(s) 11, 71, 343, 347, 1103
NciI CCSGG 2 cut(s) 710, 1285
NdeII GATC 6 cut(s) 16, 664, 995, 1082, 1280, 1438
NlaIII CATG 5 cut(s) 172, 194, 250, 691, 1232
NlaIV GGNNCC 3 cut(s) 572, 580, 1075
NmuCI GTSAC 1 cut(s) 51
NspI RCATGY 1 cut(s) 194
PciI ACATGT 1 cut(s) 190
PfeI GAWTC 5 cut(s) 82, 414, 652, 955, 1349
PfoI TCCNGGA 1 cut(s) 1283
PkrI GCNGC 7 cut(s) 43, 135, 138, 214, 494, 535, 1147
PleI GAGTC 3 cut(s) 150, 562, 1208
PmaCI CACGTG 1 cut(s) 56
PmlI CACGTG 1 cut(s) 56
PpsI GAGTC 3 cut(s) 150, 562, 1208
Ppu21I YACGTR 2 cut(s) 56, 520
PpuMI RGGWCCY 1 cut(s) 805
PscI ACATGT 1 cut(s) 190
Psp5II RGGWCCY 1 cut(s) 805
Psp6I CCWGG 2 cut(s) 547, 573
PspCI CACGTG 1 cut(s) 56
PspGI CCWGG 2 cut(s) 547, 573
PspN4I GGNNCC 3 cut(s) 572, 580, 1075
PspPI GGNCC 1 cut(s) 805
PspPPI RGGWCCY 1 cut(s) 805
PstI CTGCAG 1 cut(s) 138
PstNI CAGNNNCTG 1 cut(s) 590
PsuI RGATCY 3 cut(s) 1082, 1280, 1438
PvuII CAGCTG 1 cut(s) 139
RsaI GTAC 5 cut(s) 310, 443, 499, 929, 1424
RsaNI GTAC 5 cut(s) 309, 442, 498, 928, 1423
RseI CAYNNNNRTG 1 cut(s) 1319
SaqAI TTAA 5 cut(s) 239, 962, 1050, 1241, 1308
SatI GCNGC 7 cut(s) 42, 134, 137, 213, 493, 534, 1146
Sau3AI GATC 6 cut(s) 16, 664, 995, 1082, 1280, 1438
Sau96I GGNCC 1 cut(s) 805
SchI GAGTC 3 cut(s) 151, 563, 1208
ScrFI CCNGG 4 cut(s) 549, 575, 710, 1285
SduI GDGCHC 2 cut(s) 581, 1263
SfaNI GCATC 7 cut(s) 411, 461, 577, 610, 1126, 1132, 1311
SfcI CTRYAG 1 cut(s) 134
SinI GGWCC 1 cut(s) 805
SmiMI CAYNNNNRTG 1 cut(s) 1319
SmlI CTYRAG 1 cut(s) 1307
SmoI CTYRAG 1 cut(s) 1307
SnaBI TACGTA 1 cut(s) 520
Sse9I AATT 4 cut(s) 222, 285, 1025, 1246
SsiI CCGC 8 cut(s) 39, 65, 74, 213, 475, 495, 582, 1461
SspMI CTAG 1 cut(s) 530
StyD4I CCNGG 4 cut(s) 547, 573, 708, 1283
TaaI ACNGT 8 cut(s) 277, 410, 600, 758, 868, 1265, 1318, 1368
TaiI ACGT 3 cut(s) 58, 522, 933
TaqI TCGA 3 cut(s) 595, 676, 1092
TasI AATT 4 cut(s) 222, 285, 1025, 1246
TatI WGTACW 2 cut(s) 441, 1422
TauI GCSGC 1 cut(s) 215
TfiI GAWTC 5 cut(s) 82, 414, 652, 955, 1349
Tru1I TTAA 5 cut(s) 239, 962, 1050, 1241, 1308
Tru9I TTAA 5 cut(s) 239, 962, 1050, 1241, 1308
TscAI CASTG 5 cut(s) 12, 415, 823, 1270, 1371
TseFI GTSAC 1 cut(s) 51
TseI GCWGC 6 cut(s) 41, 133, 136, 492, 533, 1145
Tsp45I GTSAC 1 cut(s) 51
TspDTI ATGAA 4 cut(s) 185, 797, 1021, 1038
TspRI CASTG 5 cut(s) 12, 415, 823, 1270, 1371
Vha464I CTTAAG 1 cut(s) 1307
VpaK11BI GGWCC 1 cut(s) 805
XapI RAATTY 1 cut(s) 1025
XceI RCATGY 1 cut(s) 194
XmiI GTMKAC 2 cut(s) 426, 1160
XspI CTAG 1 cut(s) 530
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.