Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0004068

Physical Location & Seq

Genomic Coordinates Reverse (-)

25662797 .. 25692547

Gene Structure 29751 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0147000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGGAGGTAAGTGTTGTTGGGGACTTCTCGGAGGAGGAAATCGAGTCTTGTATTCTTGATTACTTGGGAACAGTACAATCGGCAAAATTTTTTGAGACTGAGCAGAAGTATAATCCGGTTGTGTTTCGACCATCTTCTGATTTGCAGTCTCAGCAAGTGTTCTTGAAGGATACAGATGAGAGAGCATGTGCATTTATTGCAGGTCCTGCACCAAATCGTTGGGGTTTTACTGTTGACGGTAAAGACCGGTTTGAGTCGATCACTGATATTTCTTCTAGTGATGATGCGCAGCTGAAATCTGCAGAGCTAGTTGTGGAGGGTAAGGATATTCAGAAGGATCTGCAAAGAAAACTCCGTGGTCATCCGCTTTTCTTTGGCATCACAATGGGGCTCCTGGCTGAGATTATAAATTCCAGACTTTTTACGACGGTCAGAGATTCACTTGGCTTGACATATGATGTCTCGTTCGAGTTGAACCTTTTTGATAGGCTGAATCTCGGATGGTATGTCATATCTGTAACATCAACTCCTGGCAAGGTTCACAAAGCTGTTGATGCATGCAAGAATGTCCTTAGAGGTTTGCATAGCTACAAGATTTCCCAAAGGGAGCTGGACAGGGCAAAACGGACGCTTCTAATGAGACATGAAGCTGAGATCAAGTCAAATGGCTACTGGCTTGGACTTTTAGCTCACTTGCAAGCTTTTTCTGTTCCAAGGAAGGATATATCTTGCATCAAAGATCTTACTACTTTGTACGAAATTGCTGCTATTGAGGACGTATACCTTGCATATGATCAATTGAAAATAGATGACGATTCTTTGTACTCATGTATTGGAATTGCTGGGGCTCAAGCTGGTGATGAATTGACTGTCGAAGAACCAGAGGAAGGTTTTCCAGGTGTTTTCCCAGTTGGGCGTGGGTTATCTACAATGACACGGCCTACAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008878 GO:0009501 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0016740 GO:0016772 GO:0016779 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0070566

KEGG Pathways

Metabolic & Signaling

ko00500 ko00520 ko01100 ko01110 ko02026 map00500 map00520 map01100 map01110 map02026

Pfam Domains

Protein Families

NTP_transferase

Protein Analysis

316

Amino Acids

35.33

Weight (kDa)

4.89

Isoelectric Point (pI)

44.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M16_C	PF05193	1 - 211	7.3e-20	Peptidase M16 inactive domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004068)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19210 AT5G19210 AT5G19210
fragaria_vesca	FvH4_4g14870 FvH4_4g14870 FvH4_4g14870 FvH4_4g14870 FvH4_4g14870 FvH4_4g14870 FvH4_4g14870 FvH4_4g14870 FvH4_4g14870
malus_domestica	MD16G1186800.v1.1
prunus_persica	Prupe.1G153600_v2.0.a1 Prupe.1G153600_v2.0.a1 Prupe.1G153600_v2.0.a1 Prupe.1G153600_v2.0.a1 Prupe.1G153600_v2.0.a1 Prupe.1G153600_v2.0.a1
pyrus_communis	pycom13g16050 pycom16g15660 pycom16g15670
rosa_chinensis	RchiOBHm_Chr4g0417341
rosa_laevigata	RLG00000007916
rosa_multiflora	Rmu_ssc0000216.1_g000002
rosa_roxburghii	Rroxscaffold_5G00361100
rosa_rugosa	Rorug04G0147000 Rorug04G0147100
rosa_samantha	Rh4AG210600 Rh4BG211100 Rh4CG221500 Rh4DG208500
rosa_wichuraiana	Rw4G017790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	407
Acc16I	TGCGCA	1 cut(s)	288
Acc36I	ACCTGC	1 cut(s)	191
AccI	GTMKAC	1 cut(s)	780
AciI	CCGC	1 cut(s)	365
AclWI	GGATC	1 cut(s)	345
AcsI	RAATTY	2 cut(s)	86, 409
AfaI	GTAC	3 cut(s)	75, 755, 824
AfiI	CCNNNNNNNGG	1 cut(s)	887
AgeI	ACCGGT	1 cut(s)	246
AgsI	TTSAA	3 cut(s)	166, 475, 802
AjnI	CCWGG	3 cut(s)	393, 529, 895
AluBI	AGCT	9 cut(s)	292, 307, 548, 588, 610, 650, 689, 701, 854
AluI	AGCT	9 cut(s)	292, 307, 548, 588, 610, 650, 689, 701, 854
Alw26I	GTCTC	4 cut(s)	89, 153, 466, 634
AlwI	GGATC	1 cut(s)	345
AlwNI	CAGNNNCTG	1 cut(s)	206
AoxI	GGCC	1 cut(s)	938
ApeKI	GCWGC	2 cut(s)	289, 764
ApoI	RAATTY	2 cut(s)	86, 409
AsiGI	ACCGGT	1 cut(s)	246
Asp700I	GAANNNNTTC	1 cut(s)	891
AspLEI	GCGC	1 cut(s)	289
AspS9I	GGNCC	1 cut(s)	203
AsuHPI	GGTGA	1 cut(s)	869
AvaII	GGWCC	1 cut(s)	203
BanII	GRGCYC	2 cut(s)	393, 850
BbvI	GCAGC	2 cut(s)	301, 751
BccI	CCATC	2 cut(s)	139, 495
BcgI	CGANNNNNNTGC	2 cut(s)	746, 780
BciT130I	CCWGG	3 cut(s)	395, 531, 897
BciVI	GTATCC	1 cut(s)	163
BclI	TGATCA	1 cut(s)	793
BcoDI	GTCTC	4 cut(s)	89, 153, 466, 634
BfaI	CTAG	2 cut(s)	276, 308
BfmI	CTRYAG	1 cut(s)	300
BfuAI	ACCTGC	1 cut(s)	191
BfuI	GTATCC	1 cut(s)	163
BglII	AGATCT	1 cut(s)	739
BisI	GCNGC	2 cut(s)	290, 765
BlsI	GCNGC	2 cut(s)	291, 766
Bme1390I	CCNGG	3 cut(s)	395, 531, 897
Bme18I	GGWCC	1 cut(s)	203
BmgT120I	GGNCC	1 cut(s)	203
BmiI	GGNNCC	1 cut(s)	392
BmrFI	CCNGG	3 cut(s)	395, 531, 897
BmrI	ACTGGG	1 cut(s)	902
BmsI	GCATC	4 cut(s)	274, 387, 544, 741
BmuI	ACTGGG	1 cut(s)	902
BpuEI	CTTGAG	1 cut(s)	834
BsaJI	CCNNGG	2 cut(s)	355, 713
BsaWI	WCCGGW	2 cut(s)	115, 246
BsaXI	ACNNNNNCTCC	2 cut(s)	511, 541
Bsc4I	CCNNNNNNNGG	1 cut(s)	887
Bse118I	RCCGGY	1 cut(s)	246
Bse1I	ACTGG	2 cut(s)	677, 908
BseBI	CCWGG	3 cut(s)	395, 531, 897
BseDI	CCNNGG	2 cut(s)	355, 713
BseGI	GGATG	2 cut(s)	361, 506
BseLI	CCNNNNNNNGG	1 cut(s)	887
BseMII	CTCAG	4 cut(s)	90, 164, 390, 642
BseNI	ACTGG	2 cut(s)	677, 908
BseRI	GAGGAG	1 cut(s)	47
BseXI	GCAGC	2 cut(s)	301, 751
BseYI	CCCAGC	1 cut(s)	842
BsgI	GTGCAG	1 cut(s)	192
BshFI	GGCC	1 cut(s)	940
BshTI	ACCGGT	1 cut(s)	246
BsiSI	CCGG	2 cut(s)	116, 247
BslFI	GGGAC	1 cut(s)	35
BslI	CCNNNNNNNGG	1 cut(s)	887
BsmAI	GTCTC	4 cut(s)	89, 153, 466, 634
BsmFI	GGGAC	1 cut(s)	35
BsnI	GGCC	1 cut(s)	940
Bsp1286I	GDGCHC	2 cut(s)	393, 850
Bsp143I	GATC	5 cut(s)	258, 337, 654, 739, 793
BspACI	CCGC	1 cut(s)	365
BspANI	GGCC	1 cut(s)	940
BspCNI	CTCAG	4 cut(s)	91, 163, 391, 643
BspLI	GGNNCC	1 cut(s)	392
BspMAI	CTGCAG	1 cut(s)	304
BspMI	ACCTGC	1 cut(s)	191
BspPI	GGATC	1 cut(s)	345
BsrFI	RCCGGY	1 cut(s)	246
BsrI	ACTGG	2 cut(s)	677, 908
BssAI	RCCGGY	1 cut(s)	246
BssECI	CCNNGG	2 cut(s)	355, 713
BssMI	GATC	5 cut(s)	258, 337, 654, 739, 793
BssNAI	GTATAC	1 cut(s)	781
BssT1I	CCWWGG	1 cut(s)	713
Bst1107I	GTATAC	1 cut(s)	781
Bst2UI	CCWGG	3 cut(s)	395, 531, 897
Bst4CI	ACNGT	5 cut(s)	73, 232, 239, 430, 871
BstAPI	GCANNNNNTGC	2 cut(s)	197, 206
BstC8I	GCNNGC	2 cut(s)	559, 699
BstDEI	CTNAG	5 cut(s)	99, 150, 399, 572, 651
BstDSI	CCRYGG	1 cut(s)	355
BstF5I	GGATG	2 cut(s)	361, 506
BstHHI	GCGC	1 cut(s)	289
BstKTI	GATC	5 cut(s)	261, 340, 657, 742, 796
BstMAI	GTCTC	4 cut(s)	89, 153, 466, 634
BstMBI	GATC	5 cut(s)	258, 337, 654, 739, 793
BstMWI	GCNNNNNNNGC	4 cut(s)	151, 197, 206, 554
BstNI	CCWGG	3 cut(s)	395, 531, 897
BstNSI	RCATGY	2 cut(s)	189, 561
BstSCI	CCNGG	3 cut(s)	393, 529, 895
BstSFI	CTRYAG	1 cut(s)	300
BstV1I	GCAGC	2 cut(s)	301, 751
BstX2I	RGATCY	2 cut(s)	337, 739
BstXI	CCANNNNNNTGG	1 cut(s)	219
BstYI	RGATCY	2 cut(s)	337, 739
BstZ17I	GTATAC	1 cut(s)	781
BsuI	GTATCC	1 cut(s)	163
BsuRI	GGCC	1 cut(s)	940
BtgI	CCRYGG	1 cut(s)	355
BtsCI	GGATG	2 cut(s)	361, 506
BtsIMutI	CAGTG	1 cut(s)	261
BveI	ACCTGC	1 cut(s)	191
Cac8I	GCNNGC	2 cut(s)	559, 699
CaiI	CAGNNNCTG	1 cut(s)	206
CfoI	GCGC	1 cut(s)	289
Cfr10I	RCCGGY	1 cut(s)	246
Cfr13I	GGNCC	1 cut(s)	203
CseI	GACGC	1 cut(s)	637
Csp6I	GTAC	3 cut(s)	74, 754, 823
CspAI	ACCGGT	1 cut(s)	246
CviAII	CATG	5 cut(s)	186, 558, 644, 828, 948
CviQI	GTAC	3 cut(s)	74, 754, 823
DdeI	CTNAG	5 cut(s)	99, 150, 399, 572, 651
DpnI	GATC	5 cut(s)	260, 339, 656, 741, 795
DpnII	GATC	5 cut(s)	258, 337, 654, 739, 793
Eco130I	CCWWGG	1 cut(s)	713
Eco24I	GRGCYC	2 cut(s)	393, 850
Eco47I	GGWCC	1 cut(s)	203
EcoO109I	RGGNCCY	1 cut(s)	203
EcoRII	CCWGG	3 cut(s)	393, 529, 895
EcoT14I	CCWWGG	1 cut(s)	713
EcoT22I	ATGCAT	1 cut(s)	559
EcoT38I	GRGCYC	2 cut(s)	393, 850
ErhI	CCWWGG	1 cut(s)	713
FaeI	CATG	5 cut(s)	189, 561, 647, 831, 951
FaqI	GGGAC	1 cut(s)	35
FatI	CATG	5 cut(s)	185, 557, 643, 827, 947
FauNDI	CATATG	2 cut(s)	454, 790
FbaI	TGATCA	1 cut(s)	793
FblI	GTMKAC	1 cut(s)	780
Fnu4HI	GCNGC	2 cut(s)	290, 765
FokI	GGATG	2 cut(s)	348, 513
FriOI	GRGCYC	2 cut(s)	393, 850
Fsp4HI	GCNGC	2 cut(s)	290, 765
FspBI	CTAG	2 cut(s)	276, 308
FspI	TGCGCA	1 cut(s)	288
GlaI	GCGC	1 cut(s)	288
GluI	GCNGC	2 cut(s)	290, 765
GsaI	CCCAGC	1 cut(s)	846
HaeIII	GGCC	1 cut(s)	940
HapII	CCGG	2 cut(s)	116, 247
HgaI	GACGC	1 cut(s)	637
HhaI	GCGC	1 cut(s)	289
Hin1II	CATG	5 cut(s)	189, 561, 647, 831, 951
Hin6I	GCGC	1 cut(s)	287
HinP1I	GCGC	1 cut(s)	287
HincII	GTYRAC	1 cut(s)	235
HindII	GTYRAC	1 cut(s)	235
HindIII	AAGCTT	1 cut(s)	699
HinfI	GANTC	5 cut(s)	44, 254, 437, 493, 815
HpaII	CCGG	2 cut(s)	116, 247
HphI	GGTGA	1 cut(s)	869
Hpy166II	GTNNAC	3 cut(s)	235, 541, 781
Hpy188I	TCNGA	5 cut(s)	31, 139, 333, 434, 500
Hpy188III	TCNNGA	3 cut(s)	56, 163, 414
Hpy8I	GTNNAC	3 cut(s)	235, 541, 781
Hpy99I	CGWCG	1 cut(s)	430
HpyAV	CCTTC	4 cut(s)	160, 328, 712, 881
HpyCH4III	ACNGT	5 cut(s)	73, 232, 239, 430, 871
HpyCH4IV	ACGT	1 cut(s)	777
HpyF10VI	GCNNNNNNNGC	4 cut(s)	151, 197, 206, 554
HpyF3I	CTNAG	5 cut(s)	99, 150, 399, 572, 651
HpySE526I	ACGT	1 cut(s)	777
Hsp92II	CATG	5 cut(s)	189, 561, 647, 831, 951
HspAI	GCGC	1 cut(s)	287
Ksp22I	TGATCA	1 cut(s)	793
Kzo9I	GATC	5 cut(s)	258, 337, 654, 739, 793
LmnI	GCTCC	2 cut(s)	396, 607
Lsp1109I	GCAGC	2 cut(s)	301, 751
LweI	GCATC	4 cut(s)	274, 387, 544, 741
MaeI	CTAG	2 cut(s)	276, 308
MaeII	ACGT	1 cut(s)	777
MaeIII	GTNAC	1 cut(s)	517
MalI	GATC	5 cut(s)	260, 339, 656, 741, 795
MboI	GATC	5 cut(s)	258, 337, 654, 739, 793
MboII	GAAGA	3 cut(s)	126, 264, 887
MfeI	CAATTG	1 cut(s)	797
MflI	RGATCY	2 cut(s)	337, 739
MhlI	GDGCHC	2 cut(s)	393, 850
MluCI	AATT	6 cut(s)	86, 409, 759, 797, 837, 863
MlyI	GAGTC	2 cut(s)	53, 263
MnlI	CCTC	6 cut(s)	25, 28, 310, 569, 766, 877
Mph1103I	ATGCAT	1 cut(s)	559
MroXI	GAANNNNTTC	1 cut(s)	891
MslI	CAYNNNNRTG	1 cut(s)	383
MspA1I	CMGCKG	1 cut(s)	292
MspI	CCGG	2 cut(s)	116, 247
MspR9I	CCNGG	3 cut(s)	395, 531, 897
MunI	CAATTG	1 cut(s)	797
MvaI	CCWGG	3 cut(s)	395, 531, 897
MwoI	GCNNNNNNNGC	4 cut(s)	151, 197, 206, 554
NdeI	CATATG	2 cut(s)	454, 790
NdeII	GATC	5 cut(s)	258, 337, 654, 739, 793
NlaIII	CATG	5 cut(s)	189, 561, 647, 831, 951
NlaIV	GGNNCC	1 cut(s)	392
NsbI	TGCGCA	1 cut(s)	288
NsiI	ATGCAT	1 cut(s)	559
NspI	RCATGY	2 cut(s)	189, 561
PaeI	GCATGC	1 cut(s)	561
PdmI	GAANNNNTTC	1 cut(s)	891
PfeI	GAWTC	3 cut(s)	437, 493, 815
PinAI	ACCGGT	1 cut(s)	246
PkrI	GCNGC	2 cut(s)	291, 766
PleI	GAGTC	2 cut(s)	52, 262
PpsI	GAGTC	2 cut(s)	52, 262
PpuMI	RGGWCCY	1 cut(s)	203
PsiI	TTATAA	1 cut(s)	407
Psp5II	RGGWCCY	1 cut(s)	203
Psp6I	CCWGG	3 cut(s)	393, 529, 895
PspFI	CCCAGC	1 cut(s)	842
PspGI	CCWGG	3 cut(s)	393, 529, 895
PspN4I	GGNNCC	1 cut(s)	392
PspPI	GGNCC	1 cut(s)	203
PspPPI	RGGWCCY	1 cut(s)	203
PstI	CTGCAG	1 cut(s)	304
PstNI	CAGNNNCTG	1 cut(s)	206
PsuI	RGATCY	2 cut(s)	337, 739
PvuII	CAGCTG	1 cut(s)	292
RsaI	GTAC	3 cut(s)	75, 755, 824
RsaNI	GTAC	3 cut(s)	74, 754, 823
RseI	CAYNNNNRTG	1 cut(s)	383
SatI	GCNGC	2 cut(s)	290, 765
Sau3AI	GATC	5 cut(s)	258, 337, 654, 739, 793
Sau96I	GGNCC	1 cut(s)	203
SchI	GAGTC	2 cut(s)	53, 263
ScrFI	CCNGG	3 cut(s)	395, 531, 897
SduI	GDGCHC	2 cut(s)	393, 850
SfaNI	GCATC	4 cut(s)	274, 387, 544, 741
SfcI	CTRYAG	1 cut(s)	300
SinI	GGWCC	1 cut(s)	203
SmiMI	CAYNNNNRTG	1 cut(s)	383
SmlI	CTYRAG	1 cut(s)	849
SmoI	CTYRAG	1 cut(s)	849
SphI	GCATGC	1 cut(s)	561
Sse9I	AATT	6 cut(s)	86, 409, 759, 797, 837, 863
SsiI	CCGC	1 cut(s)	365
SspMI	CTAG	2 cut(s)	276, 308
StyD4I	CCNGG	3 cut(s)	393, 529, 895
StyI	CCWWGG	1 cut(s)	713
TaaI	ACNGT	5 cut(s)	73, 232, 239, 430, 871
TaiI	ACGT	1 cut(s)	780
TaqI	TCGA	5 cut(s)	42, 127, 257, 468, 873
TasI	AATT	6 cut(s)	86, 409, 759, 797, 837, 863
TatI	WGTACW	2 cut(s)	73, 822
TfiI	GAWTC	3 cut(s)	437, 493, 815
TscAI	CASTG	1 cut(s)	268
TseI	GCWGC	2 cut(s)	289, 764
TspDTI	ATGAA	2 cut(s)	660, 876
TspGWI	ACGGA	2 cut(s)	344, 640
TspRI	CASTG	1 cut(s)	268
VpaK11BI	GGWCC	1 cut(s)	203
XapI	RAATTY	2 cut(s)	86, 409
XceI	RCATGY	2 cut(s)	189, 561
XmiI	GTMKAC	1 cut(s)	780
XmnI	GAANNNNTTC	1 cut(s)	891
XspI	CTAG	2 cut(s)	276, 308
Zsp2I	ATGCAT	1 cut(s)	559

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.