Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000216.1

Orthogroup ID

OG0004068

Physical Location & Seq

Genomic Coordinates Reverse (-)

12730 .. 14803

Gene Structure 2074 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000216.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

atgttggccgcgaagccgaaggagggtgaattggagcagaaagcatgtactgttatggctcttttggatggaggaatgttgacaaggcacaagagttggttgaaggcagagccccctacaatagtggtggcgacgatagggagtttgtgccaaatgctagagaagcatatcattaagcttgaatctatgcgagtgctggtgatcgatgaggttgattttatgtttggttcaaaacaagtcagttctcttcgcaagcttttgacttcatattcgtcaatcaatagccgtcagactgtttttgccagtgcttccattccacagcataggcgatttttacatgattgtatacaacagaaatggaccaagaatgatgcaattcatatccatgtcaatccggttcagcccatgccatcatgtttacaccatagatttgtgataagtggtaaaaacagaaggcatgaaaccttgttgtccttattgcagtccgatgcactgcagtctggcattatttttgtcggtgagcagtccgagaagtcaaagaaggctggaaatgctccaccaacaactctattagttgatttcttgaaggcttcgtatcagggatgttcagacatcctccttttggaagaagacatgaatttcaactcacgtgcagcttctctatcagaactgagacaaggaagcagctatcttcttgtgtcaacagatatagcggctagaggggttgacctaccagacaccactcacatatacaactttgatctaccaagaactgctgttgattatcttcatcgagctgggagaacaggtaggaaacctttttcagacaagaaatgcactgtaaccaacattataatgtcagaggagcgatttgttttgcaaaaatatgaaaatgaactgatgtttaactgtgaagagctaattgtatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

309

Amino Acids

34.79

Weight (kDa)

8.41

Isoelectric Point (pI)

49.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004068)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19210 AT5G19210 AT5G19210
fragaria_vesca	FvH4_4g14870 FvH4_4g14870 FvH4_4g14870 FvH4_4g14870 FvH4_4g14870 FvH4_4g14870 FvH4_4g14870 FvH4_4g14870 FvH4_4g14870
malus_domestica	MD16G1186800.v1.1
prunus_persica	Prupe.1G153600_v2.0.a1 Prupe.1G153600_v2.0.a1 Prupe.1G153600_v2.0.a1 Prupe.1G153600_v2.0.a1 Prupe.1G153600_v2.0.a1 Prupe.1G153600_v2.0.a1
pyrus_communis	pycom13g16050 pycom16g15660 pycom16g15670
rosa_chinensis	RchiOBHm_Chr4g0417341
rosa_laevigata	RLG00000007916
rosa_multiflora	Rmu_ssc0000216.1_g000002
rosa_roxburghii	Rroxscaffold_5G00361100
rosa_rugosa	Rorug04G0147000 Rorug04G0147100
rosa_samantha	Rh4AG210600 Rh4BG211100 Rh4CG221500 Rh4DG208500
rosa_wichuraiana	Rw4G017790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	854
AccI	GTMKAC	1 cut(s)	346
AccII	CGCG	1 cut(s)	11
AciI	CCGC	2 cut(s)	9, 713
AcoI	YGGCCR	1 cut(s)	6
AcsI	RAATTY	1 cut(s)	637
AcvI	CACGTG	1 cut(s)	650
AfaI	GTAC	1 cut(s)	49
AfiI	CCNNNNNNNGG	2 cut(s)	23, 622
AgsI	TTSAA	5 cut(s)	103, 182, 231, 586, 643
AluBI	AGCT	6 cut(s)	178, 256, 656, 687, 797, 919
AluI	AGCT	6 cut(s)	178, 256, 656, 687, 797, 919
Alw26I	GTCTC	1 cut(s)	667
AoxI	GGCC	1 cut(s)	6
ApeKI	GCWGC	2 cut(s)	653, 684
ApoI	RAATTY	1 cut(s)	637
ArsI	GACNNNNNNTTYG	2 cut(s)	253, 285
AspS9I	GGNCC	1 cut(s)	360
AsuHPI	GGTGA	3 cut(s)	38, 211, 530
AvaII	GGWCC	1 cut(s)	360
BanII	GRGCYC	1 cut(s)	114
BbrPI	CACGTG	1 cut(s)	650
BbsI	GAAGAC	1 cut(s)	636
BbvI	GCAGC	2 cut(s)	665, 696
BccI	CCATC	2 cut(s)	62, 418
BceAI	ACGGC	1 cut(s)	270
BcoDI	GTCTC	1 cut(s)	667
BfaI	CTAG	2 cut(s)	158, 717
BfmI	CTRYAG	1 cut(s)	494
BisI	GCNGC	4 cut(s)	9, 654, 685, 714
BlsI	GCNGC	4 cut(s)	10, 655, 686, 715
Bme18I	GGWCC	1 cut(s)	360
BmgT120I	GGNCC	1 cut(s)	360
BmsI	GCATC	2 cut(s)	361, 478
BpiI	GAAGAC	1 cut(s)	636
Bsa29I	ATCGAT	1 cut(s)	204
BsaAI	YACGTR	1 cut(s)	650
BsaWI	WCCGGW	1 cut(s)	394
BsaXI	ACNNNNNCTCC	2 cut(s)	793, 823
Bsc4I	CCNNNNNNNGG	2 cut(s)	23, 622
Bse1I	ACTGG	1 cut(s)	303
BseCI	ATCGAT	1 cut(s)	204
BseGI	GGATG	3 cut(s)	73, 608, 612
BseLI	CCNNNNNNNGG	2 cut(s)	23, 622
BseMII	CTCAG	1 cut(s)	662
BseNI	ACTGG	1 cut(s)	303
BseRI	GAGGAG	1 cut(s)	878
BseXI	GCAGC	2 cut(s)	665, 696
BseYI	CCCAGC	1 cut(s)	797
BsgI	GTGCAG	1 cut(s)	672
Bsh1236I	CGCG	1 cut(s)	11
BshFI	GGCC	1 cut(s)	8
BshVI	ATCGAT	1 cut(s)	204
BsiSI	CCGG	1 cut(s)	395
BslI	CCNNNNNNNGG	2 cut(s)	23, 622
BsmAI	GTCTC	1 cut(s)	667
BsnI	GGCC	1 cut(s)	8
Bsp1286I	GDGCHC	1 cut(s)	114
Bsp143I	GATC	2 cut(s)	201, 760
BspACI	CCGC	2 cut(s)	9, 713
BspANI	GGCC	1 cut(s)	8
BspCNI	CTCAG	1 cut(s)	663
BspDI	ATCGAT	1 cut(s)	204
BspFNI	CGCG	1 cut(s)	11
BspMAI	CTGCAG	1 cut(s)	498
BspQI	GCTCTTC	1 cut(s)	909
BsrI	ACTGG	1 cut(s)	303
BssMI	GATC	2 cut(s)	201, 760
BssNAI	GTATAC	1 cut(s)	347
Bst1107I	GTATAC	1 cut(s)	347
Bst4CI	ACNGT	4 cut(s)	52, 295, 841, 911
Bst6I	CTCTTC	2 cut(s)	252, 909
BstBAI	YACGTR	1 cut(s)	650
BstC8I	GCNNGC	1 cut(s)	254
BstDEI	CTNAG	1 cut(s)	671
BstF5I	GGATG	3 cut(s)	73, 608, 612
BstFNI	CGCG	1 cut(s)	11
BstKTI	GATC	2 cut(s)	204, 763
BstMAI	GTCTC	1 cut(s)	667
BstMBI	GATC	2 cut(s)	201, 760
BstMWI	GCNNNNNNNGC	2 cut(s)	163, 551
BstNSI	RCATGY	1 cut(s)	48
BstSFI	CTRYAG	1 cut(s)	494
BstUI	CGCG	1 cut(s)	11
BstV1I	GCAGC	2 cut(s)	665, 696
BstV2I	GAAGAC	1 cut(s)	636
BstZ17I	GTATAC	1 cut(s)	347
Bsu15I	ATCGAT	1 cut(s)	204
BsuRI	GGCC	1 cut(s)	8
BsuTUI	ATCGAT	1 cut(s)	204
BtsCI	GGATG	3 cut(s)	73, 608, 612
BtsI	GCAGTG	1 cut(s)	491
BtsIMutI	CAGTG	3 cut(s)	310, 491, 837
Cac8I	GCNNGC	1 cut(s)	254
Cfr13I	GGNCC	1 cut(s)	360
ClaI	ATCGAT	1 cut(s)	204
Csp6I	GTAC	1 cut(s)	48
CspCI	CAANNNNNGTGG	2 cut(s)	108, 143
CviAII	CATG	7 cut(s)	45, 338, 386, 406, 414, 458, 634
CviQI	GTAC	1 cut(s)	48
DdeI	CTNAG	1 cut(s)	671
DpnI	GATC	2 cut(s)	203, 762
DpnII	GATC	2 cut(s)	201, 760
EaeI	YGGCCR	1 cut(s)	6
Eam1104I	CTCTTC	2 cut(s)	252, 909
EarI	CTCTTC	2 cut(s)	252, 909
Eco24I	GRGCYC	1 cut(s)	114
Eco47I	GGWCC	1 cut(s)	360
Eco72I	CACGTG	1 cut(s)	650
EcoT38I	GRGCYC	1 cut(s)	114
FaeI	CATG	7 cut(s)	48, 341, 389, 409, 417, 461, 637
FatI	CATG	7 cut(s)	44, 337, 385, 405, 413, 457, 633
FblI	GTMKAC	1 cut(s)	346
Fnu4HI	GCNGC	4 cut(s)	9, 654, 685, 714
FokI	GGATG	3 cut(s)	80, 599, 615
FriOI	GRGCYC	1 cut(s)	114
Fsp4HI	GCNGC	4 cut(s)	9, 654, 685, 714
FspBI	CTAG	2 cut(s)	158, 717
GluI	GCNGC	4 cut(s)	9, 654, 685, 714
GsaI	CCCAGC	1 cut(s)	801
HaeIII	GGCC	1 cut(s)	8
HapII	CCGG	1 cut(s)	395
Hin1II	CATG	7 cut(s)	48, 341, 389, 409, 417, 461, 637
HincII	GTYRAC	3 cut(s)	81, 702, 727
HindII	GTYRAC	3 cut(s)	81, 702, 727
HindIII	AAGCTT	2 cut(s)	176, 254
HinfI	GANTC	1 cut(s)	182
HpaII	CCGG	1 cut(s)	395
HphI	GGTGA	3 cut(s)	38, 211, 530
Hpy166II	GTNNAC	5 cut(s)	81, 347, 419, 702, 727
Hpy188I	TCNGA	7 cut(s)	291, 487, 529, 610, 667, 826, 862
Hpy188III	TCNNGA	1 cut(s)	583
Hpy8I	GTNNAC	5 cut(s)	81, 347, 419, 702, 727
Hpy99I	CGWCG	1 cut(s)	136
HpyAV	CCTTC	5 cut(s)	13, 97, 447, 535, 580
HpyCH4III	ACNGT	4 cut(s)	52, 295, 841, 911
HpyCH4IV	ACGT	1 cut(s)	649
HpyCH4V	TGCA	7 cut(s)	374, 481, 491, 496, 653, 837, 880
HpyF10VI	GCNNNNNNNGC	2 cut(s)	163, 551
HpyF3I	CTNAG	1 cut(s)	671
HpySE526I	ACGT	1 cut(s)	649
Hsp92II	CATG	7 cut(s)	48, 341, 389, 409, 417, 461, 637
Kzo9I	GATC	2 cut(s)	201, 760
LguI	GCTCTTC	1 cut(s)	909
LmnI	GCTCC	3 cut(s)	34, 559, 865
LpnPI	CCDG	9 cut(s)	182, 316, 408, 486, 531, 584, 747, 783, 792
Lsp1109I	GCAGC	2 cut(s)	665, 696
LweI	GCATC	2 cut(s)	361, 478
MaeI	CTAG	2 cut(s)	158, 717
MaeII	ACGT	1 cut(s)	649
MaeIII	GTNAC	1 cut(s)	841
MalI	GATC	2 cut(s)	203, 762
MboI	GATC	2 cut(s)	201, 760
MboII	GAAGA	6 cut(s)	239, 638, 641, 683, 779, 926
MhlI	GDGCHC	1 cut(s)	114
MluCI	AATT	4 cut(s)	29, 375, 637, 921
MnlI	CCTC	6 cut(s)	16, 65, 202, 626, 713, 856
MseI	TTAA	2 cut(s)	174, 906
MslI	CAYNNNNRTG	2 cut(s)	384, 854
MspI	CCGG	1 cut(s)	395
MvnI	CGCG	1 cut(s)	11
MwoI	GCNNNNNNNGC	2 cut(s)	163, 551
NdeII	GATC	2 cut(s)	201, 760
NlaIII	CATG	7 cut(s)	48, 341, 389, 409, 417, 461, 637
NspI	RCATGY	1 cut(s)	48
PciSI	GCTCTTC	1 cut(s)	909
PfeI	GAWTC	1 cut(s)	182
PkrI	GCNGC	4 cut(s)	10, 655, 686, 715
PmaCI	CACGTG	1 cut(s)	650
PmlI	CACGTG	1 cut(s)	650
Ppu21I	YACGTR	1 cut(s)	650
PsiI	TTATAA	1 cut(s)	854
PspCI	CACGTG	1 cut(s)	650
PspFI	CCCAGC	1 cut(s)	797
PspPI	GGNCC	1 cut(s)	360
PstI	CTGCAG	1 cut(s)	498
RsaI	GTAC	1 cut(s)	49
RsaNI	GTAC	1 cut(s)	48
RseI	CAYNNNNRTG	2 cut(s)	384, 854
SapI	GCTCTTC	1 cut(s)	909
SaqAI	TTAA	2 cut(s)	174, 906
SatI	GCNGC	4 cut(s)	9, 654, 685, 714
Sau3AI	GATC	2 cut(s)	201, 760
Sau96I	GGNCC	1 cut(s)	360
SduI	GDGCHC	1 cut(s)	114
SfaNI	GCATC	2 cut(s)	361, 478
SfcI	CTRYAG	1 cut(s)	494
SinI	GGWCC	1 cut(s)	360
SmiMI	CAYNNNNRTG	2 cut(s)	384, 854
Sse9I	AATT	4 cut(s)	29, 375, 637, 921
SsiI	CCGC	2 cut(s)	9, 713
SspMI	CTAG	2 cut(s)	158, 717
TaaI	ACNGT	4 cut(s)	52, 295, 841, 911
TaiI	ACGT	1 cut(s)	652
TaqI	TCGA	2 cut(s)	204, 793
TasI	AATT	4 cut(s)	29, 375, 637, 921
TatI	WGTACW	1 cut(s)	47
TauI	GCSGC	2 cut(s)	11, 716
TfiI	GAWTC	1 cut(s)	182
Tru1I	TTAA	2 cut(s)	174, 906
Tru9I	TTAA	2 cut(s)	174, 906
TscAI	CASTG	3 cut(s)	310, 498, 844
TseI	GCWGC	2 cut(s)	653, 684
TspDTI	ATGAA	7 cut(s)	255, 368, 474, 650, 779, 903, 909
TspRI	CASTG	3 cut(s)	310, 498, 844
VpaK11BI	GGWCC	1 cut(s)	360
XapI	RAATTY	1 cut(s)	637
XceI	RCATGY	1 cut(s)	48
XmiI	GTMKAC	1 cut(s)	346
XspI	CTAG	2 cut(s)	158, 717

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.