FvH4_4g14870

DEAD-box ATP-dependent RNA helicase 58

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Forward (+)
18497500 .. 18500671
3172 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g14870.t5

Sequence Viewer

Length: 1188 bp
ATGCGGGACCCATGTTCCGGACCACATACTCTGCAGAATGGAGGAGCTGGGGTACGTGGCGCCGACGCCGGTGCAGCGGCAAGCTCTGCCGGCTTTGTTTTCCGGCCGGGACTGCATTCTCCACGCGCAGGTTCTGGGAAGACGCTGACGTATCTGCTGTTGATATTTGCTGTGGTGAAGACTCAGAGATCGGCTGTGCAGGCCCTCATTGTAGTGCCCACTAGGGAACTTGGCATGCAAGTAACGAGGGTTGCTAGAATGTTGGCGGCGAAGCCGAAGGAGGGGGAAGTAGAGCAGAAAGCATGTACTGTTATGGCTCTTTTGGATGGGGGAATGTTGACAAGACACAAGAGTTGGTTGAAGGCAGAGCCGCCTACAATTGTGGTGGCAACGATAGGGAGTTTGTGCCATATGCTTGAGAAGCGTCTCATTAAGCTTGAGTCAATGCGAGTGTTGGTGATCGATGAGGTTGATTTCATGTTCGGTTCAAAAGAAGTCAGCTCTCTTCGGAAGCTTTTGACGTCTTACTCGTCAATCAATAGCCGTCAGACTGTTTTTGCCAGCGCTTCCATTCCTCAGCATAGGCGATTTTTACATGATTGTATACAGCAGAAATGGACCAAGAATGATGCAATTCATATCCACGTCAATCCGGTTCAGCCCATGCCATCATGTTTACACCATAGATTTGTGATAAGTGGTAAAAACAGAAGGCATGAAACCTTGTTGTCCTTATTACAGTCCGATGAGATGCAGTCTGGCATTATTTTTGTTGGCGAGCAGTCCGAGAAGTCAAAGAAGGCTGGAAATGCTCCACCAACAACTCTATTAGTTGATTTCCTGAAGGCTTCATATCAGGGATGTTCAGACATCCTCCTTTTGGAAGAAGATATGAATTTCAACTCACGTGCAGCTTCTCTATCAGAATTGAGACAAGGAAGCAGCTATCTCCTTGTGTCAACAGATATAGCGGCTAGAGGGGTTGACCTACCAGACACCACTCACATATACAACTTTGATCTGCCAAGAACTGCTGTTGATTATCTACATCGTGCTGGGAGAACAGGTAGGAAACCGTTTTCAGACAAGAAATGCACTGTAACCAACATTATAATGTCAGAGGAGCAATTTGTATTGCAAAAATATGAAAATGAACTGATGTTTAACTGTGAAGAGCTAATTGTATAG

Protein Analysis

396

Amino Acids

43.71

Weight (kDa)

9.03

Isoelectric Point (pI)

41.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DEAD PF00270 42 - 193 2.3e-24 DEAD/DEAH box helicase
ResIII PF04851 42 - 157 7.1e-08 Type III restriction enzyme, res subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1112
AatII GACGTC 1 cut(s) 524
Acc36I ACCTGC 1 cut(s) 119
AccB1I GGYRCC 1 cut(s) 59
AccI GTMKAC 1 cut(s) 604
AccII CGCG 1 cut(s) 126
AccIII TCCGGA 1 cut(s) 17
AciI CCGC 5 cut(s) 4, 77, 266, 371, 971
AcoI YGGCCR 1 cut(s) 104
AcsI RAATTY 1 cut(s) 895
AcuI CTGAAG 1 cut(s) 863
AcvI CACGTG 1 cut(s) 908
AcyI GRCGYC 3 cut(s) 60, 66, 521
AfaI GTAC 2 cut(s) 54, 307
AfeI AGCGCT 1 cut(s) 565
AfiI CCNNNNNNNGG 4 cut(s) 17, 128, 281, 880
AgsI TTSAA 3 cut(s) 361, 489, 901
AjiI CACGTC 1 cut(s) 646
AluBI AGCT 8 cut(s) 47, 84, 436, 501, 514, 914, 945, 1177
AluI AGCT 8 cut(s) 47, 84, 436, 501, 514, 914, 945, 1177
Alw26I GTCTC 2 cut(s) 431, 925
AlwNI CAGNNNCTG 1 cut(s) 134
Aor13HI TCCGGA 1 cut(s) 17
Aor51HI AGCGCT 1 cut(s) 565
AoxI GGCC 2 cut(s) 104, 201
ApeKI GCWGC 3 cut(s) 74, 911, 942
ApoI RAATTY 1 cut(s) 895
AspLEI GCGC 3 cut(s) 62, 128, 566
AspS9I GGNCC 4 cut(s) 7, 20, 202, 618
AsuC2I CCSGG 1 cut(s) 108
AsuHPI GGTGA 2 cut(s) 187, 469
AvaII GGWCC 3 cut(s) 7, 20, 618
BaeGI GKGCMC 1 cut(s) 219
BanI GGYRCC 1 cut(s) 59
BbrPI CACGTG 1 cut(s) 908
BbsI GAAGAC 2 cut(s) 146, 185
BbvCI CCTCAGC 1 cut(s) 576
BbvI GCAGC 3 cut(s) 86, 923, 954
BccI CCATC 2 cut(s) 320, 676
BceAI ACGGC 1 cut(s) 528
BcgI CGANNNNNNTGC 2 cut(s) 53, 87
BcnI CCSGG 1 cut(s) 108
BcoDI GTCTC 2 cut(s) 431, 925
BfaI CTAG 3 cut(s) 222, 255, 975
BfmI CTRYAG 1 cut(s) 32
BfoI RGCGCY 2 cut(s) 63, 567
BfuAI ACCTGC 1 cut(s) 119
BisI GCNGC 7 cut(s) 75, 78, 267, 371, 912, 943, 972
BlsI GCNGC 7 cut(s) 76, 79, 268, 372, 913, 944, 973
Bme1390I CCNGG 1 cut(s) 108
Bme18I GGWCC 3 cut(s) 7, 20, 618
BmgBI CACGTC 1 cut(s) 646
BmgT120I GGNCC 4 cut(s) 7, 20, 202, 618
BmiI GGNNCC 3 cut(s) 8, 9, 61
BmrFI CCNGG 1 cut(s) 108
BmsI GCATC 2 cut(s) 619, 741
BpiI GAAGAC 2 cut(s) 146, 185
Bpu10I CCTNAGC 1 cut(s) 576
BpuEI CTTGAG 2 cut(s) 437, 458
BpuMI CCSGG 1 cut(s) 108
Bsa29I ATCGAT 1 cut(s) 462
BsaAI YACGTR 2 cut(s) 56, 908
BsaHI GRCGYC 3 cut(s) 60, 66, 521
BsaWI WCCGGW 2 cut(s) 17, 652
BsaXI ACNNNNNCTCC 4 cut(s) 36, 66, 1051, 1081
Bsc4I CCNNNNNNNGG 4 cut(s) 17, 128, 281, 880
Bse118I RCCGGY 2 cut(s) 68, 89
BseAI TCCGGA 1 cut(s) 17
BseCI ATCGAT 1 cut(s) 462
BseGI GGATG 3 cut(s) 331, 866, 870
BseLI CCNNNNNNNGG 4 cut(s) 17, 128, 281, 880
BseMII CTCAG 2 cut(s) 197, 590
BseRI GAGGAG 2 cut(s) 57, 1136
BseSI GKGCMC 1 cut(s) 219
BseX3I CGGCCG 1 cut(s) 104
BseXI GCAGC 3 cut(s) 86, 923, 954
BseYI CCCAGC 2 cut(s) 47, 1055
BsgI GTGCAG 3 cut(s) 93, 218, 930
Bsh1236I CGCG 1 cut(s) 126
Bsh1285I CGRYCG 1 cut(s) 107
BshFI GGCC 2 cut(s) 106, 203
BshNI GGYRCC 1 cut(s) 59
BshVI ATCGAT 1 cut(s) 462
BsiEI CGRYCG 1 cut(s) 107
BsiSI CCGG 6 cut(s) 18, 69, 90, 103, 107, 653
BslFI GGGAC 2 cut(s) 20, 123
BslI CCNNNNNNNGG 4 cut(s) 17, 128, 281, 880
BsmAI GTCTC 2 cut(s) 431, 925
BsmBI CGTCTC 1 cut(s) 431
BsmFI GGGAC 2 cut(s) 20, 123
BsmI GAATGC 1 cut(s) 115
BsnI GGCC 2 cut(s) 106, 203
Bsp1286I GDGCHC 1 cut(s) 219
Bsp13I TCCGGA 1 cut(s) 17
Bsp143I GATC 3 cut(s) 188, 459, 1018
BspACI CCGC 5 cut(s) 4, 77, 266, 371, 971
BspANI GGCC 2 cut(s) 106, 203
BspCNI CTCAG 2 cut(s) 196, 589
BspDI ATCGAT 1 cut(s) 462
BspEI TCCGGA 1 cut(s) 17
BspFNI CGCG 1 cut(s) 126
BspLI GGNNCC 3 cut(s) 8, 9, 61
BspMAI CTGCAG 1 cut(s) 36
BspMI ACCTGC 1 cut(s) 119
BspQI GCTCTTC 1 cut(s) 1167
BspT107I GGYRCC 1 cut(s) 59
BsrFI RCCGGY 2 cut(s) 68, 89
BssAI RCCGGY 2 cut(s) 68, 89
BssMI GATC 3 cut(s) 188, 459, 1018
BssNAI GTATAC 1 cut(s) 605
BssNI GRCGYC 3 cut(s) 60, 66, 521
Bst1107I GTATAC 1 cut(s) 605
Bst4CI ACNGT 6 cut(s) 310, 553, 741, 1077, 1099, 1169
Bst6I CTCTTC 2 cut(s) 510, 1167
BstACI GRCGYC 3 cut(s) 60, 66, 521
BstAPI GCANNNNNTGC 1 cut(s) 86
BstBAI YACGTR 2 cut(s) 56, 908
BstC8I GCNNGC 6 cut(s) 82, 91, 201, 236, 562, 779
BstDEI CTNAG 2 cut(s) 183, 576
BstF5I GGATG 3 cut(s) 331, 866, 870
BstFNI CGCG 1 cut(s) 126
BstH2I RGCGCY 2 cut(s) 63, 567
BstHHI GCGC 3 cut(s) 62, 128, 566
BstKTI GATC 3 cut(s) 191, 462, 1021
BstMAI GTCTC 2 cut(s) 431, 925
BstMBI GATC 3 cut(s) 188, 459, 1018
BstMCI CGRYCG 1 cut(s) 107
BstMWI GCNNNNNNNGC 7 cut(s) 74, 86, 90, 112, 200, 421, 809
BstNSI RCATGY 2 cut(s) 238, 306
BstSCI CCNGG 1 cut(s) 106
BstSFI CTRYAG 1 cut(s) 32
BstSLI GKGCMC 1 cut(s) 219
BstUI CGCG 1 cut(s) 126
BstV1I GCAGC 3 cut(s) 86, 923, 954
BstV2I GAAGAC 2 cut(s) 146, 185
BstZ17I GTATAC 1 cut(s) 605
BstZI CGGCCG 1 cut(s) 104
Bsu15I ATCGAT 1 cut(s) 462
BsuRI GGCC 2 cut(s) 106, 203
BsuTUI ATCGAT 1 cut(s) 462
BtrI CACGTC 1 cut(s) 646
BtsCI GGATG 3 cut(s) 331, 866, 870
BtsIMutI CAGTG 1 cut(s) 1095
BveI ACCTGC 1 cut(s) 119
Cac8I GCNNGC 6 cut(s) 82, 91, 201, 236, 562, 779
CaiI CAGNNNCTG 1 cut(s) 134
CfoI GCGC 3 cut(s) 62, 128, 566
Cfr10I RCCGGY 2 cut(s) 68, 89
Cfr13I GGNCC 4 cut(s) 7, 20, 202, 618
ClaI ATCGAT 1 cut(s) 462
CseI GACGC 3 cut(s) 74, 151, 413
Csp6I GTAC 2 cut(s) 53, 306
CspCI CAANNNNNGTGG 2 cut(s) 366, 401
CviAII CATG 8 cut(s) 12, 235, 303, 478, 596, 664, 672, 716
CviQI GTAC 2 cut(s) 53, 306
DdeI CTNAG 2 cut(s) 183, 576
DinI GGCGCC 1 cut(s) 61
DpnI GATC 3 cut(s) 190, 461, 1020
DpnII GATC 3 cut(s) 188, 459, 1018
EaeI YGGCCR 1 cut(s) 104
EagI CGGCCG 1 cut(s) 104
Eam1104I CTCTTC 2 cut(s) 510, 1167
EarI CTCTTC 2 cut(s) 510, 1167
EclXI CGGCCG 1 cut(s) 104
Eco47I GGWCC 3 cut(s) 7, 20, 618
Eco47III AGCGCT 1 cut(s) 565
Eco52I CGGCCG 1 cut(s) 104
Eco57I CTGAAG 1 cut(s) 863
Eco72I CACGTG 1 cut(s) 908
EcoO109I RGGNCCY 2 cut(s) 7, 202
EgeI GGCGCC 1 cut(s) 61
EheI GGCGCC 1 cut(s) 61
Esp3I CGTCTC 1 cut(s) 431
FaeI CATG 8 cut(s) 15, 238, 306, 481, 599, 667, 675, 719
FaqI GGGAC 2 cut(s) 20, 123
FatI CATG 8 cut(s) 11, 234, 302, 477, 595, 663, 671, 715
FauNDI CATATG 1 cut(s) 411
FblI GTMKAC 1 cut(s) 604
Fnu4HI GCNGC 7 cut(s) 75, 78, 267, 371, 912, 943, 972
FokI GGATG 3 cut(s) 338, 857, 873
Fsp4HI GCNGC 7 cut(s) 75, 78, 267, 371, 912, 943, 972
FspBI CTAG 3 cut(s) 222, 255, 975
GlaI GCGC 3 cut(s) 61, 127, 565
GluI GCNGC 7 cut(s) 75, 78, 267, 371, 912, 943, 972
GsaI CCCAGC 2 cut(s) 51, 1059
HaeII RGCGCY 2 cut(s) 63, 567
HaeIII GGCC 2 cut(s) 106, 203
HapII CCGG 6 cut(s) 18, 69, 90, 103, 107, 653
HgaI GACGC 3 cut(s) 74, 151, 413
HhaI GCGC 3 cut(s) 62, 128, 566
Hin1I GRCGYC 3 cut(s) 60, 66, 521
Hin1II CATG 8 cut(s) 15, 238, 306, 481, 599, 667, 675, 719
Hin6I GCGC 3 cut(s) 60, 126, 564
HinP1I GCGC 3 cut(s) 60, 126, 564
HincII GTYRAC 3 cut(s) 339, 960, 985
HindII GTYRAC 3 cut(s) 339, 960, 985
HindIII AAGCTT 2 cut(s) 434, 512
HinfI GANTC 2 cut(s) 181, 440
HpaII CCGG 6 cut(s) 18, 69, 90, 103, 107, 653
HphI GGTGA 2 cut(s) 187, 469
Hpy166II GTNNAC 5 cut(s) 339, 605, 677, 960, 985
Hpy188I TCNGA 9 cut(s) 186, 510, 549, 745, 787, 868, 925, 1084, 1120
Hpy188III TCNNGA 2 cut(s) 18, 841
Hpy8I GTNNAC 5 cut(s) 339, 605, 677, 960, 985
Hpy99I CGWCG 1 cut(s) 68
HpyAV CCTTC 5 cut(s) 271, 355, 705, 793, 838
HpyCH4III ACNGT 6 cut(s) 310, 553, 741, 1077, 1099, 1169
HpyCH4IV ACGT 5 cut(s) 55, 149, 521, 645, 907
HpyF10VI GCNNNNNNNGC 7 cut(s) 74, 86, 90, 112, 200, 421, 809
HpyF3I CTNAG 2 cut(s) 183, 576
HpySE526I ACGT 5 cut(s) 55, 149, 521, 645, 907
Hsp92I GRCGYC 3 cut(s) 60, 66, 521
Hsp92II CATG 8 cut(s) 15, 238, 306, 481, 599, 667, 675, 719
HspAI GCGC 3 cut(s) 60, 126, 564
KasI GGCGCC 1 cut(s) 59
KflI GGGWCCC 1 cut(s) 7
Kpn2I TCCGGA 1 cut(s) 17
KroI GCCGGC 1 cut(s) 89
KroNI GCCGGC 1 cut(s) 91
Kzo9I GATC 3 cut(s) 188, 459, 1018
LguI GCTCTTC 1 cut(s) 1167
LmnI GCTCC 3 cut(s) 44, 817, 1123
Lsp1109I GCAGC 3 cut(s) 86, 923, 954
LweI GCATC 2 cut(s) 619, 741
MaeI CTAG 3 cut(s) 222, 255, 975
MaeII ACGT 5 cut(s) 55, 149, 521, 645, 907
MaeIII GTNAC 2 cut(s) 241, 1099
MalI GATC 3 cut(s) 190, 461, 1020
MboI GATC 3 cut(s) 188, 459, 1018
MboII GAAGA 6 cut(s) 151, 190, 497, 896, 899, 1184
MfeI CAATTG 1 cut(s) 378
MhlI GDGCHC 1 cut(s) 219
MluCI AATT 6 cut(s) 378, 633, 895, 926, 1127, 1179
Mly113I GGCGCC 1 cut(s) 60
MlyI GAGTC 2 cut(s) 175, 449
MnlI CCTC 9 cut(s) 35, 215, 240, 274, 460, 585, 884, 971, 1114
MroI TCCGGA 1 cut(s) 17
MroNI GCCGGC 1 cut(s) 89
MseI TTAA 2 cut(s) 432, 1164
MslI CAYNNNNRTG 2 cut(s) 212, 1112
MspA1I CMGCKG 1 cut(s) 77
MspI CCGG 6 cut(s) 18, 69, 90, 103, 107, 653
MspR9I CCNGG 1 cut(s) 108
MunI CAATTG 1 cut(s) 378
Mva1269I GAATGC 1 cut(s) 115
MvnI CGCG 1 cut(s) 126
MwoI GCNNNNNNNGC 7 cut(s) 74, 86, 90, 112, 200, 421, 809
NaeI GCCGGC 1 cut(s) 91
NarI GGCGCC 1 cut(s) 60
NciI CCSGG 1 cut(s) 108
NdeI CATATG 1 cut(s) 411
NdeII GATC 3 cut(s) 188, 459, 1018
NgoMIV GCCGGC 1 cut(s) 89
NlaIII CATG 8 cut(s) 15, 238, 306, 481, 599, 667, 675, 719
NlaIV GGNNCC 3 cut(s) 8, 9, 61
NspI RCATGY 2 cut(s) 238, 306
PaeI GCATGC 1 cut(s) 238
PciSI GCTCTTC 1 cut(s) 1167
PcsI WCGNNNNNNNCGW 1 cut(s) 527
PctI GAATGC 1 cut(s) 115
PdiI GCCGGC 1 cut(s) 91
PkrI GCNGC 7 cut(s) 76, 79, 268, 372, 913, 944, 973
PleI GAGTC 2 cut(s) 175, 448
PluTI GGCGCC 1 cut(s) 63
PmaCI CACGTG 1 cut(s) 908
PmlI CACGTG 1 cut(s) 908
PpsI GAGTC 2 cut(s) 175, 448
Ppu21I YACGTR 2 cut(s) 56, 908
PpuMI RGGWCCY 1 cut(s) 7
PsiI TTATAA 1 cut(s) 1112
Psp5II RGGWCCY 1 cut(s) 7
PspCI CACGTG 1 cut(s) 908
PspFI CCCAGC 2 cut(s) 47, 1055
PspN4I GGNNCC 3 cut(s) 8, 9, 61
PspPI GGNCC 4 cut(s) 7, 20, 202, 618
PspPPI RGGWCCY 1 cut(s) 7
PstI CTGCAG 1 cut(s) 36
PstNI CAGNNNCTG 1 cut(s) 134
RsaI GTAC 2 cut(s) 54, 307
RsaNI GTAC 2 cut(s) 53, 306
RseI CAYNNNNRTG 2 cut(s) 212, 1112
SapI GCTCTTC 1 cut(s) 1167
SaqAI TTAA 2 cut(s) 432, 1164
SatI GCNGC 7 cut(s) 75, 78, 267, 371, 912, 943, 972
Sau3AI GATC 3 cut(s) 188, 459, 1018
Sau96I GGNCC 4 cut(s) 7, 20, 202, 618
SchI GAGTC 2 cut(s) 175, 449
ScrFI CCNGG 1 cut(s) 108
SduI GDGCHC 1 cut(s) 219
SfaNI GCATC 2 cut(s) 619, 741
SfcI CTRYAG 1 cut(s) 32
SfoI GGCGCC 1 cut(s) 61
SgrAI CRCCGGYG 1 cut(s) 68
SinI GGWCC 3 cut(s) 7, 20, 618
SmiMI CAYNNNNRTG 2 cut(s) 212, 1112
SmlI CTYRAG 2 cut(s) 416, 437
SmoI CTYRAG 2 cut(s) 416, 437
SphI GCATGC 1 cut(s) 238
Sse9I AATT 6 cut(s) 378, 633, 895, 926, 1127, 1179
SsiI CCGC 5 cut(s) 4, 77, 266, 371, 971
SspDI GGCGCC 1 cut(s) 59
SspMI CTAG 3 cut(s) 222, 255, 975
StyD4I CCNGG 1 cut(s) 106
TaaI ACNGT 6 cut(s) 310, 553, 741, 1077, 1099, 1169
TaiI ACGT 5 cut(s) 58, 152, 524, 648, 910
TaqI TCGA 1 cut(s) 462
TasI AATT 6 cut(s) 378, 633, 895, 926, 1127, 1179
TatI WGTACW 1 cut(s) 305
TauI GCSGC 4 cut(s) 80, 269, 373, 974
Tru1I TTAA 2 cut(s) 432, 1164
Tru9I TTAA 2 cut(s) 432, 1164
TscAI CASTG 1 cut(s) 1102
TseI GCWGC 3 cut(s) 74, 911, 942
TspDTI ATGAA 7 cut(s) 466, 626, 732, 840, 908, 1161, 1167
TspRI CASTG 1 cut(s) 1102
VpaK11BI GGWCC 3 cut(s) 7, 20, 618
XapI RAATTY 1 cut(s) 895
XceI RCATGY 2 cut(s) 238, 306
XmiI GTMKAC 1 cut(s) 604
XspI CTAG 3 cut(s) 222, 255, 975
ZraI GACGTC 1 cut(s) 522
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.