Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0004068

Physical Location & Seq

Genomic Coordinates Reverse (-)

25692571 .. 25694752

Gene Structure 2182 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0147100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGCCATCCTTCATCACCTGTAGCCCAGAAACAAATATGACAAAAATTTATGACAAGGAAACAGGGATCACTAGAGCTCGTCTTTCAAATGGAATTGCTGTAAATTACAAGATTTCAAAAAGTGAGGCTCGGAGAGGTGTGATGAGGCTTATAGTTGGTGGTGGACGGGCAACTGAAAGTCCTGAATCAAAAGGTTCTGTTGTTGTGGGTGTACGAACTCTTAGCGAGGGAGGTCGTGTTGGAAACTTTTCAAGGGAGCAGGTAGAACTGTTCTGTGTGAATCACTTGATTAATTGCTCATTGGAGTCCACGGAGGAATTTATTTCTATGGAATTCTGTTTCACTTTAAGAGATAATGGGATGCGTGCCGCTTTCCAATTGCTTCACATGGTACTTGAGCATAGTGTCTGGCTGGATGATGCATTTGATAGAGCAAGACAATTATATTTGTCATATTATCGCTCCATCCCTAAAAGCTTGGAGCGCTCAACTGCTTACAAACTCATGTTGGCAATGTTGGACGGGGATGAGCGTTTTGTAGAACCTACACCAACATCATTGCAAAATTTAACTTTGCAATCTGTGAAGGATGCGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

199

Amino Acids

22.41

Weight (kDa)

6.84

Isoelectric Point (pI)

37.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004068)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19210 AT5G19210 AT5G19210
fragaria_vesca	FvH4_4g14870 FvH4_4g14870 FvH4_4g14870 FvH4_4g14870 FvH4_4g14870 FvH4_4g14870 FvH4_4g14870 FvH4_4g14870 FvH4_4g14870
malus_domestica	MD16G1186800.v1.1
prunus_persica	Prupe.1G153600_v2.0.a1 Prupe.1G153600_v2.0.a1 Prupe.1G153600_v2.0.a1 Prupe.1G153600_v2.0.a1 Prupe.1G153600_v2.0.a1 Prupe.1G153600_v2.0.a1
pyrus_communis	pycom13g16050 pycom16g15660 pycom16g15670
rosa_chinensis	RchiOBHm_Chr4g0417341
rosa_laevigata	RLG00000007916
rosa_multiflora	Rmu_ssc0000216.1_g000002
rosa_roxburghii	Rroxscaffold_5G00361100
rosa_rugosa	Rorug04G0147000 Rorug04G0147100
rosa_samantha	Rh4AG210600 Rh4BG211100 Rh4CG221500 Rh4DG208500
rosa_wichuraiana	Rw4G017790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	594
Acc36I	ACCTGC	1 cut(s)	250
AciI	CCGC	1 cut(s)	369
AclWI	GGATC	1 cut(s)	74
AcsI	RAATTY	4 cut(s)	45, 317, 332, 565
AfaI	GTAC	2 cut(s)	213, 393
AfeI	AGCGCT	1 cut(s)	485
AgsI	TTSAA	3 cut(s)	87, 117, 252
AluBI	AGCT	2 cut(s)	77, 477
AluI	AGCT	2 cut(s)	77, 477
Alw21I	GWGCWC	1 cut(s)	79
AlwI	GGATC	1 cut(s)	74
Aor51HI	AGCGCT	1 cut(s)	485
ApoI	RAATTY	4 cut(s)	45, 317, 332, 565
AseI	ATTAAT	1 cut(s)	291
Asp700I	GAANNNNTTC	1 cut(s)	247
AspLEI	GCGC	2 cut(s)	486, 595
AsuHPI	GGTGA	1 cut(s)	7
BanII	GRGCYC	1 cut(s)	79
Bbv12I	GWGCWC	1 cut(s)	79
BccI	CCATC	2 cut(s)	13, 473
BfaI	CTAG	1 cut(s)	72
BfmI	CTRYAG	1 cut(s)	19
BfoI	RGCGCY	1 cut(s)	487
BfuAI	ACCTGC	1 cut(s)	250
BisI	GCNGC	1 cut(s)	369
BlsI	GCNGC	1 cut(s)	370
BmsI	GCATC	3 cut(s)	351, 409, 580
BpuEI	CTTGAG	1 cut(s)	416
BsaJI	CCNNGG	1 cut(s)	309
BsaXI	ACNNNNNCTCC	2 cut(s)	222, 252
Bse3DI	GCAATG	2 cut(s)	519, 557
BseDI	CCNNGG	1 cut(s)	309
BseGI	GGATG	6 cut(s)	5, 366, 421, 465, 532, 595
BseMI	GCAATG	2 cut(s)	519, 557
BsiHKAI	GWGCWC	1 cut(s)	79
Bsp1286I	GDGCHC	1 cut(s)	79
Bsp143I	GATC	1 cut(s)	66
BspACI	CCGC	1 cut(s)	369
BspMI	ACCTGC	1 cut(s)	250
BspPI	GGATC	1 cut(s)	74
BsrDI	GCAATG	2 cut(s)	519, 557
BssECI	CCNNGG	1 cut(s)	309
BssMI	GATC	1 cut(s)	66
Bst4CI	ACNGT	1 cut(s)	270
BstC8I	GCNNGC	1 cut(s)	366
BstDEI	CTNAG	1 cut(s)	221
BstDSI	CCRYGG	1 cut(s)	309
BstF5I	GGATG	6 cut(s)	5, 366, 421, 465, 532, 595
BstH2I	RGCGCY	1 cut(s)	487
BstHHI	GCGC	2 cut(s)	486, 595
BstKTI	GATC	1 cut(s)	69
BstMBI	GATC	1 cut(s)	66
BstMWI	GCNNNNNNNGC	1 cut(s)	483
BstSFI	CTRYAG	1 cut(s)	19
BtgI	CCRYGG	1 cut(s)	309
BtsCI	GGATG	6 cut(s)	5, 366, 421, 465, 532, 595
BveI	ACCTGC	1 cut(s)	250
Cac8I	GCNNGC	1 cut(s)	366
CfoI	GCGC	2 cut(s)	486, 595
Csp6I	GTAC	2 cut(s)	212, 392
CviAII	CATG	2 cut(s)	388, 505
CviJI	RGCY	6 cut(s)	24, 77, 128, 148, 412, 477
CviKI_1	RGCY	6 cut(s)	24, 77, 128, 148, 412, 477
CviQI	GTAC	2 cut(s)	212, 392
DdeI	CTNAG	1 cut(s)	221
DpnI	GATC	1 cut(s)	68
DpnII	GATC	1 cut(s)	66
Ecl136II	GAGCTC	1 cut(s)	77
Eco24I	GRGCYC	1 cut(s)	79
Eco47III	AGCGCT	1 cut(s)	485
Eco53kI	GAGCTC	1 cut(s)	77
EcoICRI	GAGCTC	1 cut(s)	77
EcoRI	GAATTC	1 cut(s)	332
EcoT22I	ATGCAT	1 cut(s)	424
EcoT38I	GRGCYC	1 cut(s)	79
FaeI	CATG	2 cut(s)	391, 508
FaiI	YATR	9 cut(s)	38, 51, 152, 329, 389, 402, 445, 454, 506
FatI	CATG	2 cut(s)	387, 504
Fnu4HI	GCNGC	1 cut(s)	369
FokI	GGATG	4 cut(s)	373, 428, 452, 539
FriOI	GRGCYC	1 cut(s)	79
Fsp4HI	GCNGC	1 cut(s)	369
FspBI	CTAG	1 cut(s)	72
FspI	TGCGCA	1 cut(s)	594
GlaI	GCGC	2 cut(s)	485, 594
GluI	GCNGC	1 cut(s)	369
HaeII	RGCGCY	1 cut(s)	487
HhaI	GCGC	2 cut(s)	486, 595
Hin1II	CATG	2 cut(s)	391, 508
Hin6I	GCGC	2 cut(s)	484, 593
HinP1I	GCGC	2 cut(s)	484, 593
HindIII	AAGCTT	1 cut(s)	475
HinfI	GANTC	3 cut(s)	185, 280, 305
HphI	GGTGA	1 cut(s)	7
Hpy166II	GTNNAC	3 cut(s)	164, 212, 309
Hpy188I	TCNGA	1 cut(s)	132
Hpy188III	TCNNGA	1 cut(s)	182
Hpy8I	GTNNAC	3 cut(s)	164, 212, 309
HpyAV	CCTTC	2 cut(s)	19, 580
HpyCH4III	ACNGT	1 cut(s)	270
HpyCH4V	TGCA	3 cut(s)	422, 562, 577
HpyF10VI	GCNNNNNNNGC	1 cut(s)	483
HpyF3I	CTNAG	1 cut(s)	221
Hsp92II	CATG	2 cut(s)	391, 508
HspAI	GCGC	2 cut(s)	484, 593
Kzo9I	GATC	1 cut(s)	66
LmnI	GCTCC	3 cut(s)	256, 467, 481
LpnPI	CCDG	7 cut(s)	31, 39, 48, 195, 245, 394, 398
LweI	GCATC	3 cut(s)	351, 409, 580
MaeI	CTAG	1 cut(s)	72
MalI	GATC	1 cut(s)	68
MboI	GATC	1 cut(s)	66
MfeI	CAATTG	1 cut(s)	377
MhlI	GDGCHC	1 cut(s)	79
MluCI	AATT	9 cut(s)	45, 93, 103, 292, 317, 332, 377, 440, 565
MlyI	GAGTC	1 cut(s)	314
MmeI	TCCRAC	2 cut(s)	220, 498
MnlI	CCTC	6 cut(s)	118, 128, 138, 220, 224, 307
Mph1103I	ATGCAT	1 cut(s)	424
MroXI	GAANNNNTTC	1 cut(s)	247
MseI	TTAA	3 cut(s)	291, 347, 569
MunI	CAATTG	1 cut(s)	377
MwoI	GCNNNNNNNGC	1 cut(s)	483
NdeII	GATC	1 cut(s)	66
NlaIII	CATG	2 cut(s)	391, 508
NsbI	TGCGCA	1 cut(s)	594
NsiI	ATGCAT	1 cut(s)	424
PdmI	GAANNNNTTC	1 cut(s)	247
PfeI	GAWTC	2 cut(s)	185, 280
PkrI	GCNGC	1 cut(s)	370
PleI	GAGTC	1 cut(s)	313
PpsI	GAGTC	1 cut(s)	313
PshBI	ATTAAT	1 cut(s)	291
Psp124BI	GAGCTC	1 cut(s)	79
RsaI	GTAC	2 cut(s)	213, 393
RsaNI	GTAC	2 cut(s)	212, 392
SacI	GAGCTC	1 cut(s)	79
SaqAI	TTAA	3 cut(s)	291, 347, 569
SatI	GCNGC	1 cut(s)	369
Sau3AI	GATC	1 cut(s)	66
SchI	GAGTC	1 cut(s)	314
SduI	GDGCHC	1 cut(s)	79
SetI	ASST	8 cut(s)	20, 79, 139, 196, 235, 264, 479, 547
SfaNI	GCATC	3 cut(s)	351, 409, 580
SfcI	CTRYAG	1 cut(s)	19
SmlI	CTYRAG	1 cut(s)	395
SmoI	CTYRAG	1 cut(s)	395
Sse9I	AATT	9 cut(s)	45, 93, 103, 292, 317, 332, 377, 440, 565
SsiI	CCGC	1 cut(s)	369
SspMI	CTAG	1 cut(s)	72
SstI	GAGCTC	1 cut(s)	79
TaaI	ACNGT	1 cut(s)	270
TasI	AATT	9 cut(s)	45, 93, 103, 292, 317, 332, 377, 440, 565
TauI	GCSGC	1 cut(s)	371
TfiI	GAWTC	2 cut(s)	185, 280
Tru1I	TTAA	3 cut(s)	291, 347, 569
Tru9I	TTAA	3 cut(s)	291, 347, 569
TspGWI	ACGGA	1 cut(s)	326
VspI	ATTAAT	1 cut(s)	291
XapI	RAATTY	4 cut(s)	45, 317, 332, 565
XmnI	GAANNNNTTC	1 cut(s)	247
XspI	CTAG	1 cut(s)	72
Zsp2I	ATGCAT	1 cut(s)	424

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.