Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0004068

Physical Location & Seq

Genomic Coordinates Forward (+)

12102446 .. 12106054

Gene Structure 3609 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G153600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1422 bp

ATGGCAACGGCTACACTTTCAGCTACTCAGCTTCTCCCTCTGTCACTCCCTAAACCCTCTCAAAAACCCCGTCATGCCCATTTTCCCTTTCAATCCCTAAACCATAGCCCTAGACTTTTCTCCTCCAATGGTTTCGTATCCAACTGTAGCCCAATACAGGCACTTCTGAACTCCACACCTATCACCACCGAAGCTGGCTCCGAACCAGAACCCTTCACCCTCCGTCAAATTTGCCAATCCCACGTGCCCGACCACGTGCTCTGCAAAATGGAGGAACTGGGATTCGTTGTACCAACGCCCGTACAAAGGCAAGCTCTGCCGACTCTGTTCTCGGGCCGCGATTGTATTCTTCACGCGCAGACAGGTTCTGGGAAGACGCTGACATACCTGCTTTTGGTGTTTTCTATTGTGAACGCTCGAAGATCAGCTGTTCAAGCTCTCATTGTGGTGCCCACTAGGGAGCTTGGCATGCAAGTTACAAAGGTTGCTCGGATGTTGGCTACGAAGCCCAAGGAAGGCGAATTGGAGCAGAAATCCTGTACTGTTATGGCTCTTTTAGATGGAGGAATGTTGATGAGGCACAAGAGTTGGTTAAAGGCGGAGCCCCCTACTATTGTGGTGGCAACAATTGGGAGTTTGTGCCAAATGCTTGAGAAGCATATGATTAAGCTTGAAGCAATGCGAGTGCTGGTAATTGATGAGGTTGATTTCATGTTCAGTTCCAAACAAGTCAGTTCTCTTCGGAAGCTTTTGACTTCCTATTCGTCGATCAATACCCGTCAGACGGTTTTTGCCAGTGCTTCCATTCCTCAGCACAAAATCTTTTTAGATAAGTGTATACAGCAGAAATGGACCAAGAATGATACAATTCATGTCCATGTCAATCCAGTTGAGCCTATGCCATCATGTTTACATCATAGATTTGTGATATGCCTAAAAAATAGAAGGCATGAGACCTTGTTGTCCTTGTTACAGTCTGATGCACCACAGTCTGCTATTGTTTTTGTTGGTGAGCAGTCTGAGAAGTCAAAAAAAGCTGGAAATGCTTCTTCAGCAACTCTATTAATTAATTTCTTGAAGGCTTCATATGAGGGATATTCAGACATCCTCCTTTTGGAAGAAGACATGAATTTCAATTCACGAGCAGCTTCTCTGTCTGAAGTGAGACAAGCAGGCAGCTATCTTCTTGTATCAACAGACATAGCAGCCAGAGGGCTTGACTTGCCAGAAACTACTCATATATACAACTATGATCTGCCAAGAACTGCTATTGATTATCTTCATCGAGCTGGAAGAACAGGTAGAAAACCGTTTTCAGACAAAAAATGCTCTGTTACAAGCATTATAATCTCAAAGGAGCGGTTTGTTTTGGAAAAATATGAAAACGAACTGATGTTTAACTGCGAAGAGCTAATTGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

474

Amino Acids

52.76

Weight (kDa)

8.93

Isoelectric Point (pI)

41.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004068)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19210 AT5G19210 AT5G19210
fragaria_vesca	FvH4_4g14870 FvH4_4g14870 FvH4_4g14870 FvH4_4g14870 FvH4_4g14870 FvH4_4g14870 FvH4_4g14870 FvH4_4g14870 FvH4_4g14870
malus_domestica	MD16G1186800.v1.1
prunus_persica	Prupe.1G153600_v2.0.a1 Prupe.1G153600_v2.0.a1 Prupe.1G153600_v2.0.a1 Prupe.1G153600_v2.0.a1 Prupe.1G153600_v2.0.a1 Prupe.1G153600_v2.0.a1
pyrus_communis	pycom13g16050 pycom16g15660 pycom16g15670
rosa_chinensis	RchiOBHm_Chr4g0417341
rosa_laevigata	RLG00000007916
rosa_multiflora	Rmu_ssc0000216.1_g000002
rosa_roxburghii	Rroxscaffold_5G00361100
rosa_rugosa	Rorug04G0147000 Rorug04G0147100
rosa_samantha	Rh4AG210600 Rh4BG211100 Rh4CG221500 Rh4DG208500
rosa_wichuraiana	Rw4G017790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1346
AasI	GACNNNNNNGTC	1 cut(s)	961
Acc36I	ACCTGC	1 cut(s)	396
AccB1I	GGYRCC	1 cut(s)	448
AccBSI	CCGCTC	1 cut(s)	1360
AccI	GTMKAC	1 cut(s)	838
AccII	CGCG	2 cut(s)	339, 356
AciI	CCGC	3 cut(s)	337, 599, 1360
AcsI	RAATTY	2 cut(s)	228, 1129
AcuI	CTGAAG	2 cut(s)	1035, 1179
AcvI	CACGTG	2 cut(s)	244, 256
AfaI	GTAC	3 cut(s)	291, 303, 541
AfiI	CCNNNNNNNGG	6 cut(s)	157, 306, 394, 515, 784, 1114
AgsI	TTSAA	5 cut(s)	92, 434, 674, 1078, 1135
Alw21I	GWGCWC	1 cut(s)	261
Alw26I	GTCTC	2 cut(s)	947, 1159
AlwNI	CAGNNNCTG	1 cut(s)	368
Ama87I	CYCGRG	1 cut(s)	331
AoxI	GGCC	1 cut(s)	334
ApeKI	GCWGC	3 cut(s)	1145, 1176, 1205
ApoI	RAATTY	2 cut(s)	228, 1129
ArsI	GACNNNNNNTTYG	4 cut(s)	55, 87, 745, 777
AseI	ATTAAT	2 cut(s)	1064, 1068
Asp700I	GAANNNNTTC	1 cut(s)	1045
AspLEI	GCGC	1 cut(s)	358
AspS9I	GGNCC	2 cut(s)	334, 852
AsuHPI	GGTGA	3 cut(s)	175, 208, 1022
AvaI	CYCGRG	1 cut(s)	331
AvaII	GGWCC	1 cut(s)	852
BaeGI	GKGCMC	2 cut(s)	249, 453
BanI	GGYRCC	1 cut(s)	448
BanII	GRGCYC	1 cut(s)	606
BauI	CACGAG	1 cut(s)	1140
BbrPI	CACGTG	2 cut(s)	244, 256
BbsI	GAAGAC	2 cut(s)	380, 1128
Bbv12I	GWGCWC	1 cut(s)	261
BbvCI	CCTCAGC	1 cut(s)	810
BbvI	GCAGC	3 cut(s)	1157, 1188, 1217
BccI	CCATC	2 cut(s)	554, 910
BceAI	ACGGC	1 cut(s)	24
BciVI	GTATCC	1 cut(s)	148
BcoDI	GTCTC	2 cut(s)	947, 1159
BfaI	CTAG	2 cut(s)	111, 456
BfmI	CTRYAG	1 cut(s)	145
BfuAI	ACCTGC	1 cut(s)	396
BfuI	GTATCC	1 cut(s)	148
BisI	GCNGC	4 cut(s)	337, 1146, 1177, 1206
BlsI	GCNGC	4 cut(s)	338, 1147, 1178, 1207
Bme18I	GGWCC	1 cut(s)	852
BmeT110I	CYCGRG	1 cut(s)	331
BmgT120I	GGNCC	2 cut(s)	334, 852
BmiI	GGNNCC	3 cut(s)	199, 450, 603
BmrI	ACTGGG	1 cut(s)	287
BmsI	GCATC	1 cut(s)	970
BmuI	ACTGGG	1 cut(s)	287
BpiI	GAAGAC	2 cut(s)	380, 1128
Bpu10I	CCTNAGC	1 cut(s)	810
BpuEI	CTTGAG	1 cut(s)	671
BsaAI	YACGTR	2 cut(s)	244, 256
BsaI	GGTCTC	1 cut(s)	947
BsaJI	CCNNGG	1 cut(s)	510
Bsc4I	CCNNNNNNNGG	6 cut(s)	157, 306, 394, 515, 784, 1114
Bse1I	ACTGG	3 cut(s)	282, 795, 887
Bse3DI	GCAATG	1 cut(s)	684
BseDI	CCNNGG	1 cut(s)	510
BseGI	GGATG	2 cut(s)	498, 1104
BseLI	CCNNNNNNNGG	6 cut(s)	157, 306, 394, 515, 784, 1114
BseMI	GCAATG	1 cut(s)	684
BseMII	CTCAG	3 cut(s)	41, 824, 1011
BseNI	ACTGG	3 cut(s)	282, 795, 887
BseRI	GAGGAG	1 cut(s)	112
BseSI	GKGCMC	2 cut(s)	249, 453
BseXI	GCAGC	3 cut(s)	1157, 1188, 1217
Bsh1236I	CGCG	2 cut(s)	339, 356
BshFI	GGCC	1 cut(s)	336
BshNI	GGYRCC	1 cut(s)	448
BsiHKAI	GWGCWC	1 cut(s)	261
BsiHKCI	CYCGRG	1 cut(s)	331
BslI	CCNNNNNNNGG	6 cut(s)	157, 306, 394, 515, 784, 1114
BsmAI	GTCTC	2 cut(s)	947, 1159
BsnI	GGCC	1 cut(s)	336
Bso31I	GGTCTC	1 cut(s)	947
BsoBI	CYCGRG	1 cut(s)	331
Bsp1286I	GDGCHC	4 cut(s)	249, 261, 453, 606
Bsp143I	GATC	3 cut(s)	422, 768, 1252
BspACI	CCGC	3 cut(s)	337, 599, 1360
BspANI	GGCC	1 cut(s)	336
BspCNI	CTCAG	3 cut(s)	40, 823, 1012
BspFNI	CGCG	2 cut(s)	339, 356
BspLI	GGNNCC	3 cut(s)	199, 450, 603
BspMI	ACCTGC	1 cut(s)	396
BspQI	GCTCTTC	1 cut(s)	1401
BspT107I	GGYRCC	1 cut(s)	448
BspTNI	GGTCTC	1 cut(s)	947
BsrBI	CCGCTC	1 cut(s)	1360
BsrDI	GCAATG	1 cut(s)	684
BsrI	ACTGG	3 cut(s)	282, 795, 887
BssECI	CCNNGG	1 cut(s)	510
BssMI	GATC	3 cut(s)	422, 768, 1252
BssNAI	GTATAC	1 cut(s)	839
BssSI	CACGAG	1 cut(s)	1140
BssT1I	CCWWGG	1 cut(s)	510
Bst1107I	GTATAC	1 cut(s)	839
Bst2BI	CACGAG	1 cut(s)	1140
Bst4CI	ACNGT	6 cut(s)	146, 544, 787, 975, 990, 1311
Bst6I	CTCTTC	2 cut(s)	744, 1401
BstAPI	GCANNNNNTGC	1 cut(s)	316
BstBAI	YACGTR	2 cut(s)	244, 256
BstC8I	GCNNGC	4 cut(s)	196, 312, 470, 1174
BstDEI	CTNAG	3 cut(s)	27, 810, 1020
BstF5I	GGATG	2 cut(s)	498, 1104
BstFNI	CGCG	2 cut(s)	339, 356
BstHHI	GCGC	1 cut(s)	358
BstKTI	GATC	3 cut(s)	425, 771, 1255
BstMAI	GTCTC	2 cut(s)	947, 1159
BstMBI	GATC	3 cut(s)	422, 768, 1252
BstMWI	GCNNNNNNNGC	7 cut(s)	316, 434, 469, 655, 1043, 1052, 1222
BstNSI	RCATGY	1 cut(s)	472
BstSFI	CTRYAG	1 cut(s)	145
BstSLI	GKGCMC	2 cut(s)	249, 453
BstUI	CGCG	2 cut(s)	339, 356
BstV1I	GCAGC	3 cut(s)	1157, 1188, 1217
BstV2I	GAAGAC	2 cut(s)	380, 1128
BstZ17I	GTATAC	1 cut(s)	839
BsuI	GTATCC	1 cut(s)	148
BsuRI	GGCC	1 cut(s)	336
BtsCI	GGATG	2 cut(s)	498, 1104
BtsIMutI	CAGTG	1 cut(s)	802
BveI	ACCTGC	1 cut(s)	396
Cac8I	GCNNGC	4 cut(s)	196, 312, 470, 1174
CaiI	CAGNNNCTG	1 cut(s)	368
CfoI	GCGC	1 cut(s)	358
Cfr13I	GGNCC	2 cut(s)	334, 852
CseI	GACGC	1 cut(s)	385
Csp6I	GTAC	3 cut(s)	290, 302, 540
CviAII	CATG	8 cut(s)	74, 469, 712, 872, 878, 906, 950, 1126
CviQI	GTAC	3 cut(s)	290, 302, 540
DdeI	CTNAG	3 cut(s)	27, 810, 1020
DpnI	GATC	3 cut(s)	424, 770, 1254
DpnII	GATC	3 cut(s)	422, 768, 1252
DrdI	GACNNNNNNGTC	1 cut(s)	961
DseDI	GACNNNNNNGTC	1 cut(s)	961
Eam1104I	CTCTTC	2 cut(s)	744, 1401
EarI	CTCTTC	2 cut(s)	744, 1401
EciI	GGCGGA	1 cut(s)	614
Eco130I	CCWWGG	1 cut(s)	510
Eco24I	GRGCYC	1 cut(s)	606
Eco31I	GGTCTC	1 cut(s)	947
Eco47I	GGWCC	1 cut(s)	852
Eco57I	CTGAAG	2 cut(s)	1035, 1179
Eco72I	CACGTG	2 cut(s)	244, 256
Eco88I	CYCGRG	1 cut(s)	331
EcoT14I	CCWWGG	1 cut(s)	510
EcoT38I	GRGCYC	1 cut(s)	606
ErhI	CCWWGG	1 cut(s)	510
FaeI	CATG	8 cut(s)	77, 472, 715, 875, 881, 909, 953, 1129
FatI	CATG	8 cut(s)	73, 468, 711, 871, 877, 905, 949, 1125
FauNDI	CATATG	2 cut(s)	660, 1087
FblI	GTMKAC	1 cut(s)	838
Fnu4HI	GCNGC	4 cut(s)	337, 1146, 1177, 1206
FokI	GGATG	2 cut(s)	505, 1091
FriOI	GRGCYC	1 cut(s)	606
Fsp4HI	GCNGC	4 cut(s)	337, 1146, 1177, 1206
FspBI	CTAG	2 cut(s)	111, 456
GlaI	GCGC	1 cut(s)	357
GluI	GCNGC	4 cut(s)	337, 1146, 1177, 1206
HaeIII	GGCC	1 cut(s)	336
HgaI	GACGC	1 cut(s)	385
HhaI	GCGC	1 cut(s)	358
Hin1II	CATG	8 cut(s)	77, 472, 715, 875, 881, 909, 953, 1129
Hin6I	GCGC	1 cut(s)	356
HinP1I	GCGC	1 cut(s)	356
HindIII	AAGCTT	2 cut(s)	668, 746
HinfI	GANTC	2 cut(s)	282, 322
HphI	GGTGA	3 cut(s)	175, 208, 1022
Hpy166II	GTNNAC	3 cut(s)	412, 839, 911
Hpy188III	TCNNGA	2 cut(s)	1075, 1140
Hpy8I	GTNNAC	3 cut(s)	412, 839, 911
Hpy99I	CGWCG	1 cut(s)	769
HpyAV	CCTTC	4 cut(s)	223, 509, 939, 1072
HpyCH4III	ACNGT	6 cut(s)	146, 544, 787, 975, 990, 1311
HpyCH4IV	ACGT	2 cut(s)	243, 255
HpyCH4V	TGCA	3 cut(s)	264, 472, 983
HpyF10VI	GCNNNNNNNGC	7 cut(s)	316, 434, 469, 655, 1043, 1052, 1222
HpyF3I	CTNAG	3 cut(s)	27, 810, 1020
HpySE526I	ACGT	2 cut(s)	243, 255
Hsp92II	CATG	8 cut(s)	77, 472, 715, 875, 881, 909, 953, 1129
HspAI	GCGC	1 cut(s)	356
Kzo9I	GATC	3 cut(s)	422, 768, 1252
LguI	GCTCTTC	1 cut(s)	1401
LmnI	GCTCC	5 cut(s)	203, 460, 526, 601, 1357
Lsp1109I	GCAGC	3 cut(s)	1157, 1188, 1217
LweI	GCATC	1 cut(s)	970
MaeI	CTAG	2 cut(s)	111, 456
MaeII	ACGT	2 cut(s)	243, 255
MaeIII	GTNAC	4 cut(s)	42, 475, 969, 1333
MalI	GATC	3 cut(s)	424, 770, 1254
MbiI	CCGCTC	1 cut(s)	1360
MboI	GATC	3 cut(s)	422, 768, 1252
MfeI	CAATTG	1 cut(s)	627
MhlI	GDGCHC	4 cut(s)	249, 261, 453, 606
MlyI	GAGTC	1 cut(s)	316
MmeI	TCCRAC	1 cut(s)	165
MroXI	GAANNNNTTC	1 cut(s)	1045
MseI	TTAA	5 cut(s)	593, 666, 1064, 1068, 1398
MslI	CAYNNNNRTG	2 cut(s)	446, 876
MspA1I	CMGCKG	1 cut(s)	428
MunI	CAATTG	1 cut(s)	627
MvnI	CGCG	2 cut(s)	339, 356
MwoI	GCNNNNNNNGC	7 cut(s)	316, 434, 469, 655, 1043, 1052, 1222
NdeI	CATATG	2 cut(s)	660, 1087
NdeII	GATC	3 cut(s)	422, 768, 1252
NlaIII	CATG	8 cut(s)	77, 472, 715, 875, 881, 909, 953, 1129
NlaIV	GGNNCC	3 cut(s)	199, 450, 603
NmuCI	GTSAC	1 cut(s)	42
NspI	RCATGY	1 cut(s)	472
PacI	TTAATTAA	1 cut(s)	1068
PaeI	GCATGC	1 cut(s)	472
PciSI	GCTCTTC	1 cut(s)	1401
PdmI	GAANNNNTTC	1 cut(s)	1045
PfeI	GAWTC	1 cut(s)	282
PkrI	GCNGC	4 cut(s)	338, 1147, 1178, 1207
PleI	GAGTC	1 cut(s)	316
PmaCI	CACGTG	2 cut(s)	244, 256
PmlI	CACGTG	2 cut(s)	244, 256
PpsI	GAGTC	1 cut(s)	316
Ppu21I	YACGTR	2 cut(s)	244, 256
PshBI	ATTAAT	2 cut(s)	1064, 1068
PsiI	TTATAA	1 cut(s)	1346
PspCI	CACGTG	2 cut(s)	244, 256
PspN4I	GGNNCC	3 cut(s)	199, 450, 603
PspPI	GGNCC	2 cut(s)	334, 852
PstNI	CAGNNNCTG	1 cut(s)	368
PvuII	CAGCTG	1 cut(s)	428
RsaI	GTAC	3 cut(s)	291, 303, 541
RsaNI	GTAC	3 cut(s)	290, 302, 540
RseI	CAYNNNNRTG	2 cut(s)	446, 876
SapI	GCTCTTC	1 cut(s)	1401
SaqAI	TTAA	5 cut(s)	593, 666, 1064, 1068, 1398
SatI	GCNGC	4 cut(s)	337, 1146, 1177, 1206
Sau3AI	GATC	3 cut(s)	422, 768, 1252
Sau96I	GGNCC	2 cut(s)	334, 852
SchI	GAGTC	1 cut(s)	316
SduI	GDGCHC	4 cut(s)	249, 261, 453, 606
SfaNI	GCATC	1 cut(s)	970
SfcI	CTRYAG	1 cut(s)	145
SinI	GGWCC	1 cut(s)	852
SmiMI	CAYNNNNRTG	2 cut(s)	446, 876
SmlI	CTYRAG	1 cut(s)	650
SmoI	CTYRAG	1 cut(s)	650
SphI	GCATGC	1 cut(s)	472
SsiI	CCGC	3 cut(s)	337, 599, 1360
SspMI	CTAG	2 cut(s)	111, 456
StyI	CCWWGG	1 cut(s)	510
TaaI	ACNGT	6 cut(s)	146, 544, 787, 975, 990, 1311
TaiI	ACGT	2 cut(s)	246, 258
TaqI	TCGA	3 cut(s)	418, 767, 1285
TatI	WGTACW	1 cut(s)	539
TauI	GCSGC	1 cut(s)	339
TfiI	GAWTC	1 cut(s)	282
Tru1I	TTAA	5 cut(s)	593, 666, 1064, 1068, 1398
Tru9I	TTAA	5 cut(s)	593, 666, 1064, 1068, 1398
TscAI	CASTG	1 cut(s)	802
TseFI	GTSAC	1 cut(s)	42
TseI	GCWGC	3 cut(s)	1145, 1176, 1205
Tsp45I	GTSAC	1 cut(s)	42
TspDTI	ATGAA	6 cut(s)	700, 860, 1074, 1142, 1271, 1395
TspGWI	ACGGA	1 cut(s)	212
TspRI	CASTG	1 cut(s)	802
VpaK11BI	GGWCC	1 cut(s)	852
VspI	ATTAAT	2 cut(s)	1064, 1068
XapI	RAATTY	2 cut(s)	228, 1129
XceI	RCATGY	1 cut(s)	472
XmiI	GTMKAC	1 cut(s)	838
XmnI	GAANNNNTTC	1 cut(s)	1045
XspI	CTAG	2 cut(s)	111, 456

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.