Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004068

Physical Location & Seq

Genomic Coordinates Forward (+)

6461268 .. 6463866

Gene Structure 2599 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G19210.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGCAAGTTACAAAAGTTGCTCGAATGTTGGCTGCAAAATCGGAGATTGATGTGAAAGGATGTACTGTGATGGCTCTCTTAGATGGAGGGACGCTAAGAAGGCACAAAAGCTGGCTAAAGGCTGAGCCACCAGCAATTTTGGTTGCTACGGTAGCAAGTTTGTGTCACATGCTAGAAAAGCACATATTTAGAATTGACTCGGTGAGAGTTCTTGTTGTAGATGAGGTTGATTTCTTATTCTACTCATCAAAGCAAGTTGGTTCTGTGCGGAAGCTTTTGACATCATTTTCTTCATGCGATAAACGTCAGACAGTTTTTGCAAGTGCTTCTATTCCCCAGCATAAACATTTTGTGCATGACTGTATACAACAAAAGTGGACAAAGAGGGATGTTGTCCATGTTCATGTTAGCGCAATCATGCCCATGCCGTTGTGCCTTCTTCACAGATTTGTTATGTGTGAGAAGACAAACAAGCATCAAGTACTACTTGCCTTGTTAGAGTCTGATGCACCTGAATCAGCTATCATTTTTGTCGGCGAGCAGTCTGAGAAGTCAAAAAAGGCTGGAAATGATCCATCTACAACTCTACTAATGGAATTCCTAAAAACTTCATATAAAGGCTCGCTGGAGATCCTCCTACTAGAGGGGGATATGAATTTCAATTCACGAGCAGCTTCACTAACAGAAATCAGGCAAGGAGGAGGGTTTCTTCTTGTTTCTACTGATATTGCAGCAAGAGGGATTGATCTACCAGAAACAACTCATATTTTTAACTTTGATCTCCCACAAACGGTTACAGATTATCTGCACCGAGCTGGAAGAGCTGGTCGAAAACCCTTTTCTGACAGGAAGTGCATTGTCGCTAATCTGATCACCTCGGAGGAAAGATTTGTCTTGCAAAGATACGAAAATGAACTTATGTTCAGCTGCGAGGAAATGATGTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

315

Amino Acids

35.46

Weight (kDa)

8.37

Isoelectric Point (pI)

45.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	100 - 270	1.2e-31	DEAD/DEAH box helicase
ResIII	PF04851	112 - 238	1.2e-08	Type III restriction enzyme, res subunit
Helicase_C	PF00271	315 - 434	1.7e-20	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004068)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19210 AT5G19210 AT5G19210
fragaria_vesca	FvH4_4g14870 FvH4_4g14870 FvH4_4g14870 FvH4_4g14870 FvH4_4g14870 FvH4_4g14870 FvH4_4g14870 FvH4_4g14870 FvH4_4g14870
malus_domestica	MD16G1186800.v1.1
prunus_persica	Prupe.1G153600_v2.0.a1 Prupe.1G153600_v2.0.a1 Prupe.1G153600_v2.0.a1 Prupe.1G153600_v2.0.a1 Prupe.1G153600_v2.0.a1 Prupe.1G153600_v2.0.a1
pyrus_communis	pycom13g16050 pycom16g15660 pycom16g15670
rosa_chinensis	RchiOBHm_Chr4g0417341
rosa_laevigata	RLG00000007916
rosa_multiflora	Rmu_ssc0000216.1_g000002
rosa_roxburghii	Rroxscaffold_5G00361100
rosa_rugosa	Rorug04G0147000 Rorug04G0147100
rosa_samantha	Rh4AG210600 Rh4BG211100 Rh4CG221500 Rh4DG208500
rosa_wichuraiana	Rw4G017790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	364
AciI	CCGC	1 cut(s)	268
AclWI	GGATC	2 cut(s)	566, 625
AcsI	RAATTY	2 cut(s)	596, 655
AfaI	GTAC	2 cut(s)	64, 483
AfiI	CCNNNNNNNGG	2 cut(s)	643, 790
AgsI	TTSAA	1 cut(s)	661
AluBI	AGCT	7 cut(s)	111, 274, 521, 674, 815, 824, 927
AluI	AGCT	7 cut(s)	111, 274, 521, 674, 815, 824, 927
AlwI	GGATC	2 cut(s)	566, 625
ApeKI	GCWGC	4 cut(s)	32, 671, 731, 927
ApoI	RAATTY	2 cut(s)	596, 655
AspLEI	GCGC	1 cut(s)	413
AsuHPI	GGTGA	2 cut(s)	214, 865
BauI	CACGAG	1 cut(s)	666
BbsI	GAAGAC	1 cut(s)	470
BbvI	GCAGC	4 cut(s)	19, 683, 743, 914
BccI	CCATC	3 cut(s)	64, 77, 583
BceAI	ACGGC	1 cut(s)	412
BclI	TGATCA	1 cut(s)	870
BfaI	CTAG	2 cut(s)	173, 641
BisI	GCNGC	4 cut(s)	33, 672, 732, 928
BlpI	GCTNAGC	1 cut(s)	123
BlsI	GCNGC	4 cut(s)	34, 673, 733, 929
BmcAI	AGTACT	1 cut(s)	483
BmsI	GCATC	2 cut(s)	484, 496
BpiI	GAAGAC	1 cut(s)	470
BpmI	CTGGAG	1 cut(s)	647
Bpu1102I	GCTNAGC	1 cut(s)	123
BsaJI	CCNNGG	1 cut(s)	876
Bsc4I	CCNNNNNNNGG	2 cut(s)	643, 790
BseDI	CCNNGG	1 cut(s)	876
BseGI	GGATG	2 cut(s)	65, 394
BseLI	CCNNNNNNNGG	2 cut(s)	643, 790
BseMII	CTCAG	2 cut(s)	114, 537
BseRI	GAGGAG	1 cut(s)	714
BseXI	GCAGC	4 cut(s)	19, 683, 743, 914
BseYI	CCCAGC	1 cut(s)	336
BsgI	GTGCAG	1 cut(s)	791
BslFI	GGGAC	1 cut(s)	103
BslI	CCNNNNNNNGG	2 cut(s)	643, 790
BsmFI	GGGAC	1 cut(s)	103
Bsp143I	GATC	5 cut(s)	571, 630, 745, 778, 870
Bsp1720I	GCTNAGC	1 cut(s)	123
BspACI	CCGC	1 cut(s)	268
BspCNI	CTCAG	2 cut(s)	115, 538
BspPI	GGATC	2 cut(s)	566, 625
BspQI	GCTCTTC	1 cut(s)	814
BssECI	CCNNGG	1 cut(s)	876
BssMI	GATC	5 cut(s)	571, 630, 745, 778, 870
BssNAI	GTATAC	1 cut(s)	365
BssSI	CACGAG	1 cut(s)	666
Bst1107I	GTATAC	1 cut(s)	365
Bst2BI	CACGAG	1 cut(s)	666
Bst4CI	ACNGT	5 cut(s)	67, 151, 313, 362, 793
Bst6I	CTCTTC	1 cut(s)	814
BstC8I	GCNNGC	3 cut(s)	113, 539, 623
BstDEI	CTNAG	4 cut(s)	79, 95, 123, 546
BstENI	CCTNNNNNAGG	1 cut(s)	641
BstF5I	GGATG	2 cut(s)	65, 394
BstHHI	GCGC	1 cut(s)	413
BstKTI	GATC	5 cut(s)	574, 633, 748, 781, 873
BstMBI	GATC	5 cut(s)	571, 630, 745, 778, 870
BstMWI	GCNNNNNNNGC	4 cut(s)	100, 152, 178, 821
BstNSI	RCATGY	1 cut(s)	172
BstV1I	GCAGC	4 cut(s)	19, 683, 743, 914
BstV2I	GAAGAC	1 cut(s)	470
BstX2I	RGATCY	1 cut(s)	630
BstYI	RGATCY	1 cut(s)	630
BstZ17I	GTATAC	1 cut(s)	365
BtsCI	GGATG	2 cut(s)	65, 394
Cac8I	GCNNGC	3 cut(s)	113, 539, 623
CfoI	GCGC	1 cut(s)	413
CseI	GACGC	1 cut(s)	100
Csp6I	GTAC	2 cut(s)	63, 482
CspCI	CAANNNNNGTGG	2 cut(s)	356, 391
CviAII	CATG	7 cut(s)	169, 294, 356, 398, 404, 418, 424
CviQI	GTAC	2 cut(s)	63, 482
DdeI	CTNAG	4 cut(s)	79, 95, 123, 546
DpnI	GATC	5 cut(s)	573, 632, 747, 780, 872
DpnII	GATC	5 cut(s)	571, 630, 745, 778, 870
Eam1104I	CTCTTC	1 cut(s)	814
EarI	CTCTTC	1 cut(s)	814
EcoNI	CCTNNNNNAGG	1 cut(s)	641
EcoRI	GAATTC	1 cut(s)	596
FaeI	CATG	7 cut(s)	172, 297, 359, 401, 407, 421, 427
FalI	AAGNNNNNCTT	2 cut(s)	471, 503
FaqI	GGGAC	1 cut(s)	103
FatI	CATG	7 cut(s)	168, 293, 355, 397, 403, 417, 423
FbaI	TGATCA	1 cut(s)	870
FblI	GTMKAC	1 cut(s)	364
Fnu4HI	GCNGC	4 cut(s)	33, 672, 732, 928
FokI	GGATG	2 cut(s)	72, 401
Fsp4HI	GCNGC	4 cut(s)	33, 672, 732, 928
FspBI	CTAG	2 cut(s)	173, 641
GlaI	GCGC	1 cut(s)	412
GluI	GCNGC	4 cut(s)	33, 672, 732, 928
GsaI	CCCAGC	1 cut(s)	340
GsuI	CTGGAG	1 cut(s)	647
HgaI	GACGC	1 cut(s)	100
HhaI	GCGC	1 cut(s)	413
Hin1II	CATG	7 cut(s)	172, 297, 359, 401, 407, 421, 427
Hin6I	GCGC	1 cut(s)	411
HinP1I	GCGC	1 cut(s)	411
HindIII	AAGCTT	1 cut(s)	272
HinfI	GANTC	3 cut(s)	197, 500, 515
HphI	GGTGA	2 cut(s)	214, 865
Hpy166II	GTNNAC	2 cut(s)	365, 378
Hpy188I	TCNGA	7 cut(s)	43, 309, 505, 547, 844, 870, 880
Hpy188III	TCNNGA	1 cut(s)	666
Hpy8I	GTNNAC	2 cut(s)	365, 378
HpyAV	CCTTC	2 cut(s)	93, 446
HpyCH4III	ACNGT	5 cut(s)	67, 151, 313, 362, 793
HpyCH4IV	ACGT	1 cut(s)	304
HpyCH4V	TGCA	9 cut(s)	4, 35, 320, 355, 509, 731, 808, 855, 898
HpyF10VI	GCNNNNNNNGC	4 cut(s)	100, 152, 178, 821
HpyF3I	CTNAG	4 cut(s)	79, 95, 123, 546
HpySE526I	ACGT	1 cut(s)	304
Hsp92II	CATG	7 cut(s)	172, 297, 359, 401, 407, 421, 427
HspAI	GCGC	1 cut(s)	411
Ksp22I	TGATCA	1 cut(s)	870
Kzo9I	GATC	5 cut(s)	571, 630, 745, 778, 870
LguI	GCTCTTC	1 cut(s)	814
Lsp1109I	GCAGC	4 cut(s)	19, 683, 743, 914
LweI	GCATC	2 cut(s)	484, 496
MaeI	CTAG	2 cut(s)	173, 641
MaeII	ACGT	1 cut(s)	304
MaeIII	GTNAC	3 cut(s)	7, 164, 793
MalI	GATC	5 cut(s)	573, 632, 747, 780, 872
MboI	GATC	5 cut(s)	571, 630, 745, 778, 870
MboII	GAAGA	5 cut(s)	282, 431, 475, 701, 831
MflI	RGATCY	1 cut(s)	630
MluCI	AATT	5 cut(s)	135, 192, 596, 655, 661
MlyI	GAGTC	2 cut(s)	191, 509
MseI	TTAA	1 cut(s)	771
MslI	CAYNNNNRTG	2 cut(s)	402, 422
MspA1I	CMGCKG	1 cut(s)	927
MwoI	GCNNNNNNNGC	4 cut(s)	100, 152, 178, 821
NdeII	GATC	5 cut(s)	571, 630, 745, 778, 870
NlaIII	CATG	7 cut(s)	172, 297, 359, 401, 407, 421, 427
NmuCI	GTSAC	1 cut(s)	164
NspI	RCATGY	1 cut(s)	172
PciSI	GCTCTTC	1 cut(s)	814
PfeI	GAWTC	1 cut(s)	515
PkrI	GCNGC	4 cut(s)	34, 673, 733, 929
PleI	GAGTC	2 cut(s)	191, 508
PpsI	GAGTC	2 cut(s)	191, 508
PspFI	CCCAGC	1 cut(s)	336
PsuI	RGATCY	1 cut(s)	630
PvuII	CAGCTG	1 cut(s)	927
RsaI	GTAC	2 cut(s)	64, 483
RsaNI	GTAC	2 cut(s)	63, 482
RseI	CAYNNNNRTG	2 cut(s)	402, 422
SapI	GCTCTTC	1 cut(s)	814
SaqAI	TTAA	1 cut(s)	771
SatI	GCNGC	4 cut(s)	33, 672, 732, 928
Sau3AI	GATC	5 cut(s)	571, 630, 745, 778, 870
ScaI	AGTACT	1 cut(s)	483
SchI	GAGTC	2 cut(s)	191, 509
SfaNI	GCATC	2 cut(s)	484, 496
SmiMI	CAYNNNNRTG	2 cut(s)	402, 422
Sse9I	AATT	5 cut(s)	135, 192, 596, 655, 661
SsiI	CCGC	1 cut(s)	268
SspMI	CTAG	2 cut(s)	173, 641
TaaI	ACNGT	5 cut(s)	67, 151, 313, 362, 793
TaiI	ACGT	1 cut(s)	307
TaqI	TCGA	2 cut(s)	22, 829
TasI	AATT	5 cut(s)	135, 192, 596, 655, 661
TatI	WGTACW	2 cut(s)	62, 481
TfiI	GAWTC	1 cut(s)	515
Tru1I	TTAA	1 cut(s)	771
Tru9I	TTAA	1 cut(s)	771
TseFI	GTSAC	1 cut(s)	164
TseI	GCWGC	4 cut(s)	32, 671, 731, 927
Tsp45I	GTSAC	1 cut(s)	164
TspDTI	ATGAA	5 cut(s)	282, 392, 600, 668, 927
XagI	CCTNNNNNAGG	1 cut(s)	641
XapI	RAATTY	2 cut(s)	596, 655
XceI	RCATGY	1 cut(s)	172
XmiI	GTMKAC	1 cut(s)	364
XspI	CTAG	2 cut(s)	173, 641
ZrmI	AGTACT	1 cut(s)	483

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.