Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0004068

Physical Location & Seq

Genomic Coordinates Forward (+)

11817632 .. 11819157

Gene Structure 1526 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g16050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGCGGCTCAATGTTTCTCAGCTCCTCCATCTTCCACTCTCACTCCCAACTCAGAATCCCTGCCATGCCCATTTTCACTTTCACTCACTAAGCCTTAACCCTAGGCTTTTCTCCTTCAATGGCATCGTATCCAGTTGTCGTCCATTACAGGCCATTCTCAACACTCCCCTTGTCGCCACCGACGCCGAATCCGAACATGAACCCCTCACTGTTGATTTCATGTTCAGTTCCAACCAAGTTGCTTCTCTTCGAAAACTTTTGACATCCTACTCTTCAATCAATACTCGACAGACTGTTTTTGCTAGGGCTTCTATCCCTCAGCACAGACGATTTTTACATGACTGTATACATCATGTCCATGTTAATCCAATTCAGCCTATGCCATCATGTTTTTACAGCATACATTTATTGTACGAAAATTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

142

Amino Acids

16.08

Weight (kDa)

8.49

Isoelectric Point (pI)

38.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004068)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19210 AT5G19210 AT5G19210
fragaria_vesca	FvH4_4g14870 FvH4_4g14870 FvH4_4g14870 FvH4_4g14870 FvH4_4g14870 FvH4_4g14870 FvH4_4g14870 FvH4_4g14870 FvH4_4g14870
malus_domestica	MD16G1186800.v1.1
prunus_persica	Prupe.1G153600_v2.0.a1 Prupe.1G153600_v2.0.a1 Prupe.1G153600_v2.0.a1 Prupe.1G153600_v2.0.a1 Prupe.1G153600_v2.0.a1 Prupe.1G153600_v2.0.a1
pyrus_communis	pycom13g16050 pycom16g15660 pycom16g15670
rosa_chinensis	RchiOBHm_Chr4g0417341
rosa_laevigata	RLG00000007916
rosa_multiflora	Rmu_ssc0000216.1_g000002
rosa_roxburghii	Rroxscaffold_5G00361100
rosa_rugosa	Rorug04G0147000 Rorug04G0147100
rosa_samantha	Rh4AG210600 Rh4BG211100 Rh4CG221500 Rh4DG208500
rosa_wichuraiana	Rw4G017790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	346
AciI	CCGC	1 cut(s)	4
AcsI	RAATTY	1 cut(s)	418
AcyI	GRCGYC	1 cut(s)	183
AfaI	GTAC	1 cut(s)	413
AgsI	TTSAA	2 cut(s)	118, 276
AluBI	AGCT	1 cut(s)	22
AluI	AGCT	1 cut(s)	22
AoxI	GGCC	1 cut(s)	150
ApoI	RAATTY	1 cut(s)	418
AspA2I	CCTAGG	1 cut(s)	101
AsuII	TTCGAA	1 cut(s)	250
AvrII	CCTAGG	1 cut(s)	101
BbvCI	CCTCAGC	1 cut(s)	318
BccI	CCATC	2 cut(s)	36, 391
BciVI	GTATCC	1 cut(s)	139
BfaI	CTAG	2 cut(s)	102, 303
BfuI	GTATCC	1 cut(s)	139
BisI	GCNGC	1 cut(s)	5
BlnI	CCTAGG	1 cut(s)	101
BlsI	GCNGC	1 cut(s)	6
BmsI	GCATC	1 cut(s)	132
Bpu10I	CCTNAGC	1 cut(s)	318
Bpu14I	TTCGAA	1 cut(s)	250
BsaHI	GRCGYC	1 cut(s)	183
BsaJI	CCNNGG	1 cut(s)	101
BsaXI	ACNNNNNCTCC	2 cut(s)	27, 57
Bse1I	ACTGG	1 cut(s)	132
BseDI	CCNNGG	1 cut(s)	101
BseGI	GGATG	1 cut(s)	263
BseMII	CTCAG	3 cut(s)	32, 65, 332
BseNI	ACTGG	1 cut(s)	132
BseRI	GAGGAG	1 cut(s)	14
BshFI	GGCC	1 cut(s)	152
BsnI	GGCC	1 cut(s)	152
Bsp119I	TTCGAA	1 cut(s)	250
BspACI	CCGC	1 cut(s)	4
BspANI	GGCC	1 cut(s)	152
BspCNI	CTCAG	3 cut(s)	31, 64, 331
BspT104I	TTCGAA	1 cut(s)	250
BsrI	ACTGG	1 cut(s)	132
BssECI	CCNNGG	1 cut(s)	101
BssNAI	GTATAC	1 cut(s)	347
BssNI	GRCGYC	1 cut(s)	183
BssT1I	CCWWGG	1 cut(s)	101
Bst1107I	GTATAC	1 cut(s)	347
Bst4CI	ACNGT	3 cut(s)	211, 295, 344
Bst6I	CTCTTC	2 cut(s)	252, 277
BstACI	GRCGYC	1 cut(s)	183
BstBI	TTCGAA	1 cut(s)	250
BstDEI	CTNAG	4 cut(s)	18, 51, 89, 318
BstF5I	GGATG	1 cut(s)	263
BstMWI	GCNNNNNNNGC	1 cut(s)	182
BstZ17I	GTATAC	1 cut(s)	347
BsuI	GTATCC	1 cut(s)	139
BsuRI	GGCC	1 cut(s)	152
BtsCI	GGATG	1 cut(s)	263
BtsIMutI	CAGTG	1 cut(s)	207
CseI	GACGC	1 cut(s)	191
Csp6I	GTAC	1 cut(s)	412
CviAII	CATG	7 cut(s)	65, 197, 220, 338, 353, 359, 387
CviJI	RGCY	7 cut(s)	7, 22, 93, 106, 152, 308, 376
CviKI_1	RGCY	7 cut(s)	7, 22, 93, 106, 152, 308, 376
CviQI	GTAC	1 cut(s)	412
DdeI	CTNAG	4 cut(s)	18, 51, 89, 318
Eam1104I	CTCTTC	2 cut(s)	252, 277
EarI	CTCTTC	2 cut(s)	252, 277
Eco130I	CCWWGG	1 cut(s)	101
EcoT14I	CCWWGG	1 cut(s)	101
ErhI	CCWWGG	1 cut(s)	101
FaeI	CATG	7 cut(s)	68, 200, 223, 341, 356, 362, 390
FatI	CATG	7 cut(s)	64, 196, 219, 337, 352, 358, 386
FblI	GTMKAC	1 cut(s)	346
Fnu4HI	GCNGC	1 cut(s)	5
FokI	GGATG	1 cut(s)	250
Fsp4HI	GCNGC	1 cut(s)	5
FspBI	CTAG	2 cut(s)	102, 303
GluI	GCNGC	1 cut(s)	5
HaeIII	GGCC	1 cut(s)	152
HgaI	GACGC	1 cut(s)	191
Hin1I	GRCGYC	1 cut(s)	183
Hin1II	CATG	7 cut(s)	68, 200, 223, 341, 356, 362, 390
HinfI	GANTC	2 cut(s)	55, 188
Hpy166II	GTNNAC	1 cut(s)	347
Hpy188I	TCNGA	2 cut(s)	54, 193
Hpy8I	GTNNAC	1 cut(s)	347
Hpy99I	CGWCG	1 cut(s)	185
HpyAV	CCTTC	1 cut(s)	124
HpyCH4III	ACNGT	3 cut(s)	211, 295, 344
HpyF10VI	GCNNNNNNNGC	1 cut(s)	182
HpyF3I	CTNAG	4 cut(s)	18, 51, 89, 318
Hsp92I	GRCGYC	1 cut(s)	183
Hsp92II	CATG	7 cut(s)	68, 200, 223, 341, 356, 362, 390
LmnI	GCTCC	1 cut(s)	27
LpnPI	CCDG	3 cut(s)	73, 134, 145
LweI	GCATC	1 cut(s)	132
MaeI	CTAG	2 cut(s)	102, 303
MboII	GAAGA	3 cut(s)	23, 239, 264
MluCI	AATT	2 cut(s)	369, 418
MmeI	TCCRAC	1 cut(s)	255
MnlI	CCTC	3 cut(s)	35, 215, 327
MseI	TTAA	3 cut(s)	96, 363, 424
MslI	CAYNNNNRTG	1 cut(s)	357
MwoI	GCNNNNNNNGC	1 cut(s)	182
NlaIII	CATG	7 cut(s)	68, 200, 223, 341, 356, 362, 390
NspV	TTCGAA	1 cut(s)	250
PcsI	WCGNNNNNNNCGW	1 cut(s)	189
PfeI	GAWTC	2 cut(s)	55, 188
PkrI	GCNGC	1 cut(s)	6
RsaI	GTAC	1 cut(s)	413
RsaNI	GTAC	1 cut(s)	412
RseI	CAYNNNNRTG	1 cut(s)	357
SaqAI	TTAA	3 cut(s)	96, 363, 424
SatI	GCNGC	1 cut(s)	5
SetI	ASST	1 cut(s)	24
SfaNI	GCATC	1 cut(s)	132
SfuI	TTCGAA	1 cut(s)	250
SmiMI	CAYNNNNRTG	1 cut(s)	357
Sse9I	AATT	2 cut(s)	369, 418
SsiI	CCGC	1 cut(s)	4
SspMI	CTAG	2 cut(s)	102, 303
StyI	CCWWGG	1 cut(s)	101
TaaI	ACNGT	3 cut(s)	211, 295, 344
TaqI	TCGA	2 cut(s)	250, 286
TasI	AATT	2 cut(s)	369, 418
TauI	GCSGC	1 cut(s)	7
TfiI	GAWTC	2 cut(s)	55, 188
Tru1I	TTAA	3 cut(s)	96, 363, 424
Tru9I	TTAA	3 cut(s)	96, 363, 424
TscAI	CASTG	1 cut(s)	214
TspDTI	ATGAA	2 cut(s)	208, 213
TspRI	CASTG	1 cut(s)	214
XapI	RAATTY	1 cut(s)	418
XmaJI	CCTAGG	1 cut(s)	101
XmiI	GTMKAC	1 cut(s)	346
XspI	CTAG	2 cut(s)	102, 303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.