Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0004068

Physical Location & Seq

Genomic Coordinates Forward (+)

11620122 .. 11620823

Gene Structure 702 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g15660.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGCTACACTCTCAGCTACTCAGCTGCTCCATCTTCCACTCCCGCTTCAAACTCAAAAGCCTCGCCATGCCCATTTCCACTTTGAATCCCTAAACCCTAACCCCAGGCTCTTCTCCTCCAACGACGTCGTATCCAATTGTCGGCCATTACAGGCCATTATCAACACTCCCCTTATCGCCACCGACGCCAACTCCGAACAAGAACCCCTCACTCTCCGCCGCATTTGCCAACCCCACGTTCCCGACCACGTGCTCAAAAGAATGGAGGACTTGGGGTTCGTCGTTTCGACGCCCGTACAGCGGCAGGCTCTGCCGACTCTGTTTTCCGGCCGCGACTGCATACTTCACGCGCAGACAGGTTCTGGGAAAACGCTGACGTACCTGCTTTTGATATTTTCTGCTGTGAACACTCGGAGATCAGCTGTTCAAGCTCTCGTTGTGGTTCCCACTAGGGAACTTGGGATGCAAGTAAGTTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

160

Amino Acids

17.62

Weight (kDa)

9.2

Isoelectric Point (pI)

42.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004068)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19210 AT5G19210 AT5G19210
fragaria_vesca	FvH4_4g14870 FvH4_4g14870 FvH4_4g14870 FvH4_4g14870 FvH4_4g14870 FvH4_4g14870 FvH4_4g14870 FvH4_4g14870 FvH4_4g14870
malus_domestica	MD16G1186800.v1.1
prunus_persica	Prupe.1G153600_v2.0.a1 Prupe.1G153600_v2.0.a1 Prupe.1G153600_v2.0.a1 Prupe.1G153600_v2.0.a1 Prupe.1G153600_v2.0.a1 Prupe.1G153600_v2.0.a1
pyrus_communis	pycom13g16050 pycom16g15660 pycom16g15670
rosa_chinensis	RchiOBHm_Chr4g0417341
rosa_laevigata	RLG00000007916
rosa_multiflora	Rmu_ssc0000216.1_g000002
rosa_roxburghii	Rroxscaffold_5G00361100
rosa_rugosa	Rorug04G0147000 Rorug04G0147100
rosa_samantha	Rh4AG210600 Rh4BG211100 Rh4CG221500 Rh4DG208500
rosa_wichuraiana	Rw4G017790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	129
Acc36I	ACCTGC	1 cut(s)	390
AccII	CGCG	2 cut(s)	333, 350
AciI	CCGC	5 cut(s)	44, 217, 220, 301, 331
AcoI	YGGCCR	2 cut(s)	143, 328
AcvI	CACGTG	1 cut(s)	250
AcyI	GRCGYC	3 cut(s)	126, 186, 290
AfaI	GTAC	2 cut(s)	297, 380
AfiI	CCNNNNNNNGG	2 cut(s)	141, 300
AgsI	TTSAA	3 cut(s)	50, 86, 428
AjnI	CCWGG	1 cut(s)	104
AjuI	GAANNNNNNNTTGG	2 cut(s)	222, 254
AloI	GAACNNNNNNTCC	2 cut(s)	260, 292
AluBI	AGCT	4 cut(s)	17, 25, 422, 431
AluI	AGCT	4 cut(s)	17, 25, 422, 431
Alw21I	GWGCWC	1 cut(s)	255
AlwNI	CAGNNNCTG	2 cut(s)	310, 362
AoxI	GGCC	3 cut(s)	143, 153, 328
ApeKI	GCWGC	1 cut(s)	25
ArsI	GACNNNNNNTTYG	2 cut(s)	260, 292
AspLEI	GCGC	1 cut(s)	352
BbrPI	CACGTG	1 cut(s)	250
Bbv12I	GWGCWC	1 cut(s)	255
BbvI	GCAGC	1 cut(s)	12
BccI	CCATC	1 cut(s)	39
BciT130I	CCWGG	1 cut(s)	106
BciVI	GTATCC	1 cut(s)	142
BfaI	CTAG	2 cut(s)	450, 478
BfuAI	ACCTGC	1 cut(s)	390
BfuI	GTATCC	1 cut(s)	142
BisI	GCNGC	4 cut(s)	26, 220, 302, 331
BlsI	GCNGC	4 cut(s)	27, 221, 303, 332
Bme1390I	CCNGG	1 cut(s)	106
BmiI	GGNNCC	1 cut(s)	444
BmrFI	CCNGG	1 cut(s)	106
BmsI	GCATC	1 cut(s)	453
BsaAI	YACGTR	1 cut(s)	250
BsaHI	GRCGYC	3 cut(s)	126, 186, 290
BsaJI	CCNNGG	1 cut(s)	104
BsaXI	ACNNNNNCTCC	2 cut(s)	176, 206
Bsc4I	CCNNNNNNNGG	2 cut(s)	141, 300
BseBI	CCWGG	1 cut(s)	106
BseDI	CCNNGG	1 cut(s)	104
BseGI	GGATG	1 cut(s)	468
BseLI	CCNNNNNNNGG	2 cut(s)	141, 300
BseMII	CTCAG	2 cut(s)	27, 35
BseRI	GAGGAG	1 cut(s)	106
BseX3I	CGGCCG	1 cut(s)	328
BseXI	GCAGC	1 cut(s)	12
Bsh1236I	CGCG	2 cut(s)	333, 350
Bsh1285I	CGRYCG	1 cut(s)	331
BshFI	GGCC	3 cut(s)	145, 155, 330
BsiEI	CGRYCG	1 cut(s)	331
BsiHKAI	GWGCWC	1 cut(s)	255
BsiSI	CCGG	1 cut(s)	327
BslI	CCNNNNNNNGG	2 cut(s)	141, 300
BsnI	GGCC	3 cut(s)	145, 155, 330
Bsp1286I	GDGCHC	1 cut(s)	255
Bsp143I	GATC	1 cut(s)	416
BspACI	CCGC	5 cut(s)	44, 217, 220, 301, 331
BspANI	GGCC	3 cut(s)	145, 155, 330
BspCNI	CTCAG	2 cut(s)	26, 34
BspFNI	CGCG	2 cut(s)	333, 350
BspLI	GGNNCC	1 cut(s)	444
BspMI	ACCTGC	1 cut(s)	390
BspQI	GCTCTTC	1 cut(s)	116
BssECI	CCNNGG	1 cut(s)	104
BssMI	GATC	1 cut(s)	416
BssNI	GRCGYC	3 cut(s)	126, 186, 290
Bst2UI	CCWGG	1 cut(s)	106
Bst6I	CTCTTC	1 cut(s)	116
BstACI	GRCGYC	3 cut(s)	126, 186, 290
BstAPI	GCANNNNNTGC	1 cut(s)	310
BstBAI	YACGTR	1 cut(s)	250
BstC8I	GCNNGC	1 cut(s)	306
BstDEI	CTNAG	2 cut(s)	13, 21
BstF5I	GGATG	1 cut(s)	468
BstFNI	CGCG	2 cut(s)	333, 350
BstHHI	GCGC	1 cut(s)	352
BstKTI	GATC	1 cut(s)	419
BstMBI	GATC	1 cut(s)	416
BstMCI	CGRYCG	1 cut(s)	331
BstMWI	GCNNNNNNNGC	6 cut(s)	185, 225, 298, 310, 336, 428
BstNI	CCWGG	1 cut(s)	106
BstSCI	CCNGG	1 cut(s)	104
BstUI	CGCG	2 cut(s)	333, 350
BstV1I	GCAGC	1 cut(s)	12
BstZI	CGGCCG	1 cut(s)	328
BsuI	GTATCC	1 cut(s)	142
BsuRI	GGCC	3 cut(s)	145, 155, 330
BtsCI	GGATG	1 cut(s)	468
BveI	ACCTGC	1 cut(s)	390
Cac8I	GCNNGC	1 cut(s)	306
CaiI	CAGNNNCTG	2 cut(s)	310, 362
CfoI	GCGC	1 cut(s)	352
CseI	GACGC	2 cut(s)	194, 298
Csp6I	GTAC	2 cut(s)	296, 379
CviAII	CATG	1 cut(s)	68
CviQI	GTAC	2 cut(s)	296, 379
DdeI	CTNAG	2 cut(s)	13, 21
DpnI	GATC	1 cut(s)	418
DpnII	GATC	1 cut(s)	416
EaeI	YGGCCR	2 cut(s)	143, 328
EagI	CGGCCG	1 cut(s)	328
Eam1104I	CTCTTC	1 cut(s)	116
EarI	CTCTTC	1 cut(s)	116
EciI	GGCGGA	1 cut(s)	206
EclXI	CGGCCG	1 cut(s)	328
Eco52I	CGGCCG	1 cut(s)	328
Eco72I	CACGTG	1 cut(s)	250
EcoRII	CCWGG	1 cut(s)	104
FaeI	CATG	1 cut(s)	71
FaiI	YATR	2 cut(s)	69, 341
FatI	CATG	1 cut(s)	67
FauI	CCCGC	1 cut(s)	51
Fnu4HI	GCNGC	4 cut(s)	26, 220, 302, 331
FokI	GGATG	1 cut(s)	475
Fsp4HI	GCNGC	4 cut(s)	26, 220, 302, 331
FspBI	CTAG	2 cut(s)	450, 478
GlaI	GCGC	1 cut(s)	351
GluI	GCNGC	4 cut(s)	26, 220, 302, 331
HaeIII	GGCC	3 cut(s)	145, 155, 330
HapII	CCGG	1 cut(s)	327
HgaI	GACGC	2 cut(s)	194, 298
HhaI	GCGC	1 cut(s)	352
Hin1I	GRCGYC	3 cut(s)	126, 186, 290
Hin1II	CATG	1 cut(s)	71
Hin6I	GCGC	1 cut(s)	350
HinP1I	GCGC	1 cut(s)	350
HinfI	GANTC	2 cut(s)	86, 316
HpaII	CCGG	1 cut(s)	327
Hpy166II	GTNNAC	1 cut(s)	406
Hpy188I	TCNGA	2 cut(s)	196, 414
Hpy188III	TCNNGA	1 cut(s)	242
Hpy8I	GTNNAC	1 cut(s)	406
Hpy99I	CGWCG	5 cut(s)	128, 131, 188, 284, 292
HpyCH4IV	ACGT	4 cut(s)	126, 237, 249, 377
HpyCH4V	TGCA	2 cut(s)	339, 466
HpyF10VI	GCNNNNNNNGC	6 cut(s)	185, 225, 298, 310, 336, 428
HpyF3I	CTNAG	2 cut(s)	13, 21
HpySE526I	ACGT	4 cut(s)	126, 237, 249, 377
Hsp92I	GRCGYC	3 cut(s)	126, 186, 290
Hsp92II	CATG	1 cut(s)	71
HspAI	GCGC	1 cut(s)	350
Kzo9I	GATC	1 cut(s)	416
LguI	GCTCTTC	1 cut(s)	116
LmnI	GCTCC	1 cut(s)	33
LpnPI	CCDG	8 cut(s)	91, 118, 137, 290, 340, 342, 348, 395
Lsp1109I	GCAGC	1 cut(s)	12
LweI	GCATC	1 cut(s)	453
MaeI	CTAG	2 cut(s)	450, 478
MaeII	ACGT	4 cut(s)	126, 237, 249, 377
MalI	GATC	1 cut(s)	418
MboI	GATC	1 cut(s)	416
MboII	GAAGA	2 cut(s)	26, 103
MfeI	CAATTG	1 cut(s)	136
MhlI	GDGCHC	1 cut(s)	255
MluCI	AATT	1 cut(s)	136
MlyI	GAGTC	1 cut(s)	310
MmeI	TCCRAC	1 cut(s)	144
MnlI	CCTC	4 cut(s)	72, 127, 218, 259
MspA1I	CMGCKG	3 cut(s)	25, 301, 422
MspI	CCGG	1 cut(s)	327
MspR9I	CCNGG	1 cut(s)	106
MunI	CAATTG	1 cut(s)	136
MvaI	CCWGG	1 cut(s)	106
MvnI	CGCG	2 cut(s)	333, 350
MwoI	GCNNNNNNNGC	6 cut(s)	185, 225, 298, 310, 336, 428
NdeII	GATC	1 cut(s)	416
NlaIII	CATG	1 cut(s)	71
NlaIV	GGNNCC	1 cut(s)	444
PciSI	GCTCTTC	1 cut(s)	116
PcsI	WCGNNNNNNNCGW	1 cut(s)	192
PfeI	GAWTC	1 cut(s)	86
PkrI	GCNGC	4 cut(s)	27, 221, 303, 332
PleI	GAGTC	1 cut(s)	310
PmaCI	CACGTG	1 cut(s)	250
PmlI	CACGTG	1 cut(s)	250
PpsI	GAGTC	1 cut(s)	310
Ppu21I	YACGTR	1 cut(s)	250
Psp6I	CCWGG	1 cut(s)	104
PspCI	CACGTG	1 cut(s)	250
PspGI	CCWGG	1 cut(s)	104
PspN4I	GGNNCC	1 cut(s)	444
PstNI	CAGNNNCTG	2 cut(s)	310, 362
PvuII	CAGCTG	2 cut(s)	25, 422
RsaI	GTAC	2 cut(s)	297, 380
RsaNI	GTAC	2 cut(s)	296, 379
SapI	GCTCTTC	1 cut(s)	116
SatI	GCNGC	4 cut(s)	26, 220, 302, 331
Sau3AI	GATC	1 cut(s)	416
SchI	GAGTC	1 cut(s)	310
ScrFI	CCNGG	1 cut(s)	106
SduI	GDGCHC	1 cut(s)	255
SfaNI	GCATC	1 cut(s)	453
Sse9I	AATT	1 cut(s)	136
SsiI	CCGC	5 cut(s)	44, 217, 220, 301, 331
SspMI	CTAG	2 cut(s)	450, 478
StyD4I	CCNGG	1 cut(s)	104
TaiI	ACGT	4 cut(s)	129, 240, 252, 380
TaqI	TCGA	1 cut(s)	287
TasI	AATT	1 cut(s)	136
TauI	GCSGC	3 cut(s)	222, 304, 333
TfiI	GAWTC	1 cut(s)	86
TseI	GCWGC	1 cut(s)	25
XspI	CTAG	2 cut(s)	450, 478
ZraI	GACGTC	1 cut(s)	127

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.