Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0018520

Physical Location & Seq

Genomic Coordinates Reverse (-)

15441367 .. 15444327

Gene Structure 2961 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G179100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGGTTCCAAAGCGCCGAAGTACGCGCATACTTCGAACAAGATTTGCTAGTACCCGCAAAGACAAGGGTGAAGGCTCTGGACCTGAGGTAATTGTAACAATCGATGATGATGATGATAGCAGTGACGAAAGTGGTGCTGCAGAGGCTGAGATTAGCACCCACAGGCAAGAGAGCACTCATGGCACAAGTGGCATGGATGAGGACCCTGATGAAGGCCAATACTATAGCCATGATGAAGACACATGTTTGGATTTCGACATTCCCTTGGAGGAGCCAGGTGCCTCAGACATGCCTCCTGAGTTTGCTAGTGACCATGGGCAGCGTGTTGACATTACATTGGTTGTGCCCACTACAGGTTACTCATCGGAGGCCGGCCTTGACTTTCCTGCTACTGTTGCTGACGCCATCTTGGGTCTTCCAGCAGCGCGGCCTCCTGCTCCTCCTGTCCTAGGCACATCTGACGCGGCTGCCGACACCTCTCCACCACTTCCAGCAATGCCACCTCCGACTCCTCTTATCTTGGGCACATCCGATATGGCTGTCGACGCCTCTCCACCACTTCCGGCAGTGCCACCTCTGACTCCTCTTATCTTGGGCACATCCGATATGGCTGTCGACGCCTCTCCACCACTTCCGGCAGTGCTTCCTCCTACTGAGATCATTGACAATAGCCATAAGGATGGTGATGCCTTTATCGCAGGTACCTCCGGCAGGCATTCATCCGGGAAAAGCATGTCTTGGCAGGATTGGGAAAATTCCTTCATGGCATTCAAAGCCTTTTTCGATGGGGGTGTCATAATTCTTCGGTCCGTCGACGAGCTTCTTTCGCTTTGCCACAAATTCAACGGTTATGTGGCATTCCAAGGCGCACTTGTGTATCCAGAGACAGTTGCGGTCTTGAGAAATTCATGGATAACTACGGCAATTTCATGGAAGCTACCGACATCACCACTTCTTTCTCAAGGTGTACTGCCTTTCGAGCCCTTGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000943 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003887 GO:0003964 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006278 GO:0006508 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0019538 GO:0032196 GO:0032197 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVP_2 RVT_1 Retrotrans_gag rve zf-CCHC

Protein Analysis

331

Amino Acids

34.98

Weight (kDa)

4.29

Isoelectric Point (pI)

56.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018520)

Species	Orthologous Gene IDs
prunus_persica	Prupe.1G179100_v2.0.a1 Prupe.1G193100_v2.0.a1 Prupe.1G203500_v2.0.a1 Prupe.1G421900_v2.0.a1 Prupe.1G571800_v2.0.a1 Prupe.4G258600_v2.0.a1 Prupe.4G286200_v2.0.a1 Prupe.6G176900_v2.0.a1 Prupe.6G176900_v2.0.a1 Prupe.6G176900_v2.0.a1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	689
Acc65I	GGTACC	1 cut(s)	701
AccB1I	GGYRCC	2 cut(s)	278, 701
AccI	GTMKAC	3 cut(s)	543, 615, 813
AccII	CGCG	3 cut(s)	25, 427, 464
AciI	CCGC	4 cut(s)	55, 427, 464, 893
AcsI	RAATTY	3 cut(s)	754, 839, 904
AcyI	GRCGYC	3 cut(s)	402, 546, 618
AfaI	GTAC	4 cut(s)	22, 52, 703, 969
AfiI	CCNNNNNNNGG	4 cut(s)	212, 353, 449, 711
AflIII	ACRYGT	1 cut(s)	242
AgsI	TTSAA	2 cut(s)	772, 844
AjnI	CCWGG	1 cut(s)	274
AluBI	AGCT	2 cut(s)	820, 937
AluI	AGCT	2 cut(s)	820, 937
Alw21I	GWGCWC	1 cut(s)	176
Alw26I	GTCTC	1 cut(s)	878
AlwNI	CAGNNNCTG	1 cut(s)	146
AoxI	GGCC	4 cut(s)	214, 369, 373, 428
ApeKI	GCWGC	4 cut(s)	137, 319, 422, 467
ApoI	RAATTY	3 cut(s)	754, 839, 904
Asp718I	GGTACC	1 cut(s)	701
AspA2I	CCTAGG	1 cut(s)	448
AspLEI	GCGC	4 cut(s)	15, 27, 427, 869
AspS9I	GGNCC	3 cut(s)	80, 202, 807
AsuC2I	CCSGG	1 cut(s)	724
AsuHPI	GGTGA	3 cut(s)	80, 695, 939
AsuII	TTCGAA	1 cut(s)	34
AvaII	GGWCC	3 cut(s)	80, 202, 807
AvrII	CCTAGG	1 cut(s)	448
AxyI	CCTNAGG	1 cut(s)	84
BaeGI	GKGCMC	3 cut(s)	348, 527, 599
BaeI	ACNNNNGTAYC	2 cut(s)	860, 893
BanI	GGYRCC	2 cut(s)	278, 701
BanII	GRGCYC	1 cut(s)	984
BbsI	GAAGAC	2 cut(s)	243, 407
Bbv12I	GWGCWC	1 cut(s)	176
BbvI	GCAGC	4 cut(s)	124, 331, 434, 454
BccI	CCATC	3 cut(s)	413, 674, 779
BceAI	ACGGC	1 cut(s)	936
BcgI	CGANNNNNNTGC	2 cut(s)	116, 150
BciT130I	CCWGG	1 cut(s)	276
BciVI	GTATCC	1 cut(s)	888
BcnI	CCSGG	1 cut(s)	724
BcoDI	GTCTC	1 cut(s)	878
BfaI	CTAG	3 cut(s)	48, 306, 449
BfmI	CTRYAG	3 cut(s)	138, 223, 351
BfoI	RGCGCY	1 cut(s)	16
BfuAI	ACCTGC	1 cut(s)	689
BfuI	GTATCC	1 cut(s)	888
BisI	GCNGC	6 cut(s)	138, 320, 423, 428, 465, 468
BlnI	CCTAGG	1 cut(s)	448
BlsI	GCNGC	6 cut(s)	139, 321, 424, 429, 466, 469
Bme1390I	CCNGG	2 cut(s)	276, 724
Bme18I	GGWCC	3 cut(s)	80, 202, 807
BmgT120I	GGNCC	3 cut(s)	80, 202, 807
BmiI	GGNNCC	5 cut(s)	6, 204, 273, 280, 703
BmrFI	CCNGG	2 cut(s)	276, 724
BmsI	GCATC	1 cut(s)	676
BpiI	GAAGAC	2 cut(s)	243, 407
Bpu14I	TTCGAA	1 cut(s)	34
BpuEI	CTTGAG	2 cut(s)	919, 945
BpuMI	CCSGG	1 cut(s)	724
Bsa29I	ATCGAT	1 cut(s)	102
BsaHI	GRCGYC	3 cut(s)	402, 546, 618
BsaJI	CCNNGG	5 cut(s)	264, 313, 448, 862, 984
Bsc4I	CCNNNNNNNGG	4 cut(s)	212, 353, 449, 711
Bse118I	RCCGGY	1 cut(s)	371
Bse21I	CCTNAGG	1 cut(s)	84
Bse3DI	GCAATG	1 cut(s)	501
BseBI	CCWGG	1 cut(s)	276
BseCI	ATCGAT	1 cut(s)	102
BseDI	CCNNGG	5 cut(s)	264, 313, 448, 862, 984
BseGI	GGATG	5 cut(s)	202, 527, 599, 685, 719
BseLI	CCNNNNNNNGG	4 cut(s)	212, 353, 449, 711
BseMI	GCAATG	1 cut(s)	501
BseMII	CTCAG	5 cut(s)	75, 138, 288, 297, 645
BseRI	GAGGAG	4 cut(s)	284, 429, 501, 573
BseSI	GKGCMC	3 cut(s)	348, 527, 599
BseXI	GCAGC	4 cut(s)	124, 331, 434, 454
Bsh1236I	CGCG	3 cut(s)	25, 427, 464
BshFI	GGCC	4 cut(s)	216, 371, 375, 430
BshNI	GGYRCC	2 cut(s)	278, 701
BshVI	ATCGAT	1 cut(s)	102
BsiHKAI	GWGCWC	1 cut(s)	176
BsiSI	CCGG	5 cut(s)	372, 563, 635, 708, 723
BslI	CCNNNNNNNGG	4 cut(s)	212, 353, 449, 711
BsmAI	GTCTC	1 cut(s)	878
BsmI	GAATGC	3 cut(s)	715, 767, 857
BsnI	GGCC	4 cut(s)	216, 371, 375, 430
Bsp119I	TTCGAA	1 cut(s)	34
Bsp1286I	GDGCHC	5 cut(s)	176, 348, 527, 599, 984
Bsp143I	GATC	1 cut(s)	657
Bsp19I	CCATGG	1 cut(s)	313
BspACI	CCGC	4 cut(s)	55, 427, 464, 893
BspANI	GGCC	4 cut(s)	216, 371, 375, 430
BspCNI	CTCAG	5 cut(s)	76, 139, 289, 296, 646
BspDI	ATCGAT	1 cut(s)	102
BspFNI	CGCG	3 cut(s)	25, 427, 464
BspLI	GGNNCC	5 cut(s)	6, 204, 273, 280, 703
BspMAI	CTGCAG	1 cut(s)	142
BspMI	ACCTGC	1 cut(s)	689
BspT104I	TTCGAA	1 cut(s)	34
BspT107I	GGYRCC	2 cut(s)	278, 701
BsrDI	GCAATG	1 cut(s)	501
BsrFI	RCCGGY	1 cut(s)	371
BssAI	RCCGGY	1 cut(s)	371
BssECI	CCNNGG	5 cut(s)	264, 313, 448, 862, 984
BssMI	GATC	1 cut(s)	657
BssNI	GRCGYC	3 cut(s)	402, 546, 618
BssT1I	CCWWGG	5 cut(s)	264, 313, 448, 862, 984
Bst2UI	CCWGG	1 cut(s)	276
Bst4CI	ACNGT	3 cut(s)	394, 848, 889
BstACI	GRCGYC	3 cut(s)	402, 546, 618
BstBI	TTCGAA	1 cut(s)	34
BstC8I	GCNNGC	2 cut(s)	373, 713
BstDEI	CTNAG	6 cut(s)	84, 147, 283, 297, 654, 990
BstDSI	CCRYGG	1 cut(s)	313
BstENI	CCTNNNNNAGG	3 cut(s)	210, 447, 709
BstF5I	GGATG	5 cut(s)	202, 527, 599, 685, 719
BstFNI	CGCG	3 cut(s)	25, 427, 464
BstH2I	RGCGCY	1 cut(s)	16
BstHHI	GCGC	4 cut(s)	15, 27, 427, 869
BstKTI	GATC	1 cut(s)	660
BstMAI	GTCTC	1 cut(s)	878
BstMBI	GATC	1 cut(s)	657
BstNI	CCWGG	1 cut(s)	276
BstNSI	RCATGY	3 cut(s)	246, 292, 736
BstSCI	CCNGG	2 cut(s)	274, 722
BstSFI	CTRYAG	3 cut(s)	138, 223, 351
BstSLI	GKGCMC	3 cut(s)	348, 527, 599
BstUI	CGCG	3 cut(s)	25, 427, 464
BstV1I	GCAGC	4 cut(s)	124, 331, 434, 454
BstV2I	GAAGAC	2 cut(s)	243, 407
BstXI	CCANNNNNNTGG	1 cut(s)	680
Bsu15I	ATCGAT	1 cut(s)	102
Bsu36I	CCTNAGG	1 cut(s)	84
BsuI	GTATCC	1 cut(s)	888
BsuRI	GGCC	4 cut(s)	216, 371, 375, 430
BsuTUI	ATCGAT	1 cut(s)	102
BtgI	CCRYGG	1 cut(s)	313
BtsCI	GGATG	5 cut(s)	202, 527, 599, 685, 719
BtsI	GCAGTG	3 cut(s)	127, 573, 645
BtsIMutI	CAGTG	3 cut(s)	127, 573, 645
BveI	ACCTGC	1 cut(s)	689
Cac8I	GCNNGC	2 cut(s)	373, 713
CaiI	CAGNNNCTG	1 cut(s)	146
CfoI	GCGC	4 cut(s)	15, 27, 427, 869
Cfr10I	RCCGGY	1 cut(s)	371
Cfr13I	GGNCC	3 cut(s)	80, 202, 807
ClaI	ATCGAT	1 cut(s)	102
CpoI	CGGWCCG	1 cut(s)	807
CseI	GACGC	4 cut(s)	410, 470, 554, 626
Csp6I	GTAC	4 cut(s)	21, 51, 702, 968
CspI	CGGWCCG	1 cut(s)	807
CviQI	GTAC	4 cut(s)	21, 51, 702, 968
DdeI	CTNAG	6 cut(s)	84, 147, 283, 297, 654, 990
DpnI	GATC	1 cut(s)	659
DpnII	GATC	1 cut(s)	657
Eco130I	CCWWGG	5 cut(s)	264, 313, 448, 862, 984
Eco24I	GRGCYC	1 cut(s)	984
Eco47I	GGWCC	3 cut(s)	80, 202, 807
Eco81I	CCTNAGG	1 cut(s)	84
EcoNI	CCTNNNNNAGG	3 cut(s)	210, 447, 709
EcoO109I	RGGNCCY	1 cut(s)	202
EcoRII	CCWGG	1 cut(s)	274
EcoT14I	CCWWGG	5 cut(s)	264, 313, 448, 862, 984
EcoT38I	GRGCYC	1 cut(s)	984
ErhI	CCWWGG	5 cut(s)	264, 313, 448, 862, 984
FalI	AAGNNNNNCTT	4 cut(s)	721, 753, 855, 887
FauI	CCCGC	1 cut(s)	62
FblI	GTMKAC	3 cut(s)	543, 615, 813
Fnu4HI	GCNGC	6 cut(s)	138, 320, 423, 428, 465, 468
FokI	GGATG	5 cut(s)	209, 514, 586, 692, 706
FriOI	GRGCYC	1 cut(s)	984
FseI	GGCCGGCC	1 cut(s)	375
Fsp4HI	GCNGC	6 cut(s)	138, 320, 423, 428, 465, 468
FspBI	CTAG	3 cut(s)	48, 306, 449
GlaI	GCGC	4 cut(s)	14, 26, 426, 868
GluI	GCNGC	6 cut(s)	138, 320, 423, 428, 465, 468
HaeII	RGCGCY	1 cut(s)	16
HaeIII	GGCC	4 cut(s)	216, 371, 375, 430
HapII	CCGG	5 cut(s)	372, 563, 635, 708, 723
HgaI	GACGC	4 cut(s)	410, 470, 554, 626
HhaI	GCGC	4 cut(s)	15, 27, 427, 869
Hin1I	GRCGYC	3 cut(s)	402, 546, 618
Hin6I	GCGC	4 cut(s)	13, 25, 425, 867
HinP1I	GCGC	4 cut(s)	13, 25, 425, 867
HincII	GTYRAC	4 cut(s)	328, 544, 616, 814
HindII	GTYRAC	4 cut(s)	328, 544, 616, 814
HinfI	GANTC	2 cut(s)	508, 580
HpaII	CCGG	5 cut(s)	372, 563, 635, 708, 723
HphI	GGTGA	3 cut(s)	80, 695, 939
Hpy166II	GTNNAC	5 cut(s)	328, 544, 616, 814, 968
Hpy188I	TCNGA	7 cut(s)	286, 367, 460, 507, 532, 579, 604
Hpy188III	TCNNGA	4 cut(s)	78, 296, 881, 898
Hpy8I	GTNNAC	5 cut(s)	328, 544, 616, 814, 968
Hpy99I	CGWCG	4 cut(s)	548, 620, 815, 818
HpyAV	CCTTC	3 cut(s)	65, 206, 769
HpyCH4III	ACNGT	3 cut(s)	394, 848, 889
HpyCH4V	TGCA	1 cut(s)	140
HpyF3I	CTNAG	6 cut(s)	84, 147, 283, 297, 654, 990
Hsp92I	GRCGYC	3 cut(s)	402, 546, 618
HspAI	GCGC	4 cut(s)	13, 25, 425, 867
KpnI	GGTACC	1 cut(s)	705
KroI	GCCGGC	1 cut(s)	371
KroNI	GCCGGC	1 cut(s)	373
Kzo9I	GATC	1 cut(s)	657
LmnI	GCTCC	2 cut(s)	271, 442
Lsp1109I	GCAGC	4 cut(s)	124, 331, 434, 454
LweI	GCATC	1 cut(s)	676
MaeI	CTAG	3 cut(s)	48, 306, 449
MaeIII	GTNAC	4 cut(s)	94, 122, 308, 356
MalI	GATC	1 cut(s)	659
MboI	GATC	1 cut(s)	657
MboII	GAAGA	3 cut(s)	248, 407, 794
MhlI	GDGCHC	5 cut(s)	176, 348, 527, 599, 984
MluCI	AATT	6 cut(s)	90, 754, 798, 839, 904, 924
MlyI	GAGTC	2 cut(s)	502, 574
MmeI	TCCRAC	1 cut(s)	530
MroNI	GCCGGC	1 cut(s)	371
MslI	CAYNNNNRTG	1 cut(s)	678
MspI	CCGG	5 cut(s)	372, 563, 635, 708, 723
MspR9I	CCNGG	2 cut(s)	276, 724
Mva1269I	GAATGC	3 cut(s)	715, 767, 857
MvaI	CCWGG	1 cut(s)	276
MvnI	CGCG	3 cut(s)	25, 427, 464
NaeI	GCCGGC	1 cut(s)	373
NciI	CCSGG	1 cut(s)	724
NcoI	CCATGG	1 cut(s)	313
NdeII	GATC	1 cut(s)	657
NgoMIV	GCCGGC	1 cut(s)	371
NlaIV	GGNNCC	5 cut(s)	6, 204, 273, 280, 703
NmuCI	GTSAC	2 cut(s)	122, 308
NspI	RCATGY	3 cut(s)	246, 292, 736
NspV	TTCGAA	1 cut(s)	34
PciI	ACATGT	1 cut(s)	242
PcsI	WCGNNNNNNNCGW	1 cut(s)	468
PctI	GAATGC	3 cut(s)	715, 767, 857
PdiI	GCCGGC	1 cut(s)	373
PfoI	TCCNGGA	1 cut(s)	722
PkrI	GCNGC	6 cut(s)	139, 321, 424, 429, 466, 469
PleI	GAGTC	2 cut(s)	502, 574
PpsI	GAGTC	2 cut(s)	502, 574
PpuMI	RGGWCCY	1 cut(s)	202
PscI	ACATGT	1 cut(s)	242
Psp5II	RGGWCCY	1 cut(s)	202
Psp6I	CCWGG	1 cut(s)	274
PspGI	CCWGG	1 cut(s)	274
PspN4I	GGNNCC	5 cut(s)	6, 204, 273, 280, 703
PspPI	GGNCC	3 cut(s)	80, 202, 807
PspPPI	RGGWCCY	1 cut(s)	202
PstI	CTGCAG	1 cut(s)	142
PstNI	CAGNNNCTG	1 cut(s)	146
RigI	GGCCGGCC	1 cut(s)	375
RsaI	GTAC	4 cut(s)	22, 52, 703, 969
RsaNI	GTAC	4 cut(s)	21, 51, 702, 968
RseI	CAYNNNNRTG	1 cut(s)	678
Rsr2I	CGGWCCG	1 cut(s)	807
RsrII	CGGWCCG	1 cut(s)	807
SalI	GTCGAC	3 cut(s)	542, 614, 812
SatI	GCNGC	6 cut(s)	138, 320, 423, 428, 465, 468
Sau3AI	GATC	1 cut(s)	657
Sau96I	GGNCC	3 cut(s)	80, 202, 807
SchI	GAGTC	2 cut(s)	502, 574
ScrFI	CCNGG	2 cut(s)	276, 724
SduI	GDGCHC	5 cut(s)	176, 348, 527, 599, 984
SfaNI	GCATC	1 cut(s)	676
SfcI	CTRYAG	3 cut(s)	138, 223, 351
SfuI	TTCGAA	1 cut(s)	34
SgrDI	CGTCGACG	1 cut(s)	812
SinI	GGWCC	3 cut(s)	80, 202, 807
SmiMI	CAYNNNNRTG	1 cut(s)	678
SmlI	CTYRAG	2 cut(s)	898, 960
SmoI	CTYRAG	2 cut(s)	898, 960
Sse9I	AATT	6 cut(s)	90, 754, 798, 839, 904, 924
SsiI	CCGC	4 cut(s)	55, 427, 464, 893
SspMI	CTAG	3 cut(s)	48, 306, 449
StyD4I	CCNGG	2 cut(s)	274, 722
StyI	CCWWGG	5 cut(s)	264, 313, 448, 862, 984
TaaI	ACNGT	3 cut(s)	394, 848, 889
TaqI	TCGA	8 cut(s)	34, 102, 255, 543, 615, 783, 813, 978
TaqII	GACCGA	1 cut(s)	795
TasI	AATT	6 cut(s)	90, 754, 798, 839, 904, 924
TatI	WGTACW	1 cut(s)	967
TauI	GCSGC	2 cut(s)	430, 467
TscAI	CASTG	3 cut(s)	127, 573, 645
TseFI	GTSAC	2 cut(s)	122, 308
TseI	GCWGC	4 cut(s)	137, 319, 422, 467
Tsp45I	GTSAC	2 cut(s)	122, 308
TspDTI	ATGAA	6 cut(s)	225, 249, 708, 751, 897, 918
TspGWI	ACGGA	1 cut(s)	799
TspRI	CASTG	3 cut(s)	127, 573, 645
VpaK11BI	GGWCC	3 cut(s)	80, 202, 807
XagI	CCTNNNNNAGG	3 cut(s)	210, 447, 709
XapI	RAATTY	3 cut(s)	754, 839, 904
XceI	RCATGY	3 cut(s)	246, 292, 736
XmaJI	CCTAGG	1 cut(s)	448
XmiI	GTMKAC	3 cut(s)	543, 615, 813
XspI	CTAG	3 cut(s)	48, 306, 449

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.