Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0018520

Physical Location & Seq

Genomic Coordinates Forward (+)

18126911 .. 18131828

Gene Structure 4918 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G176900.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGCGCCTTCCAGCAGCGCAGCCTCCTGCTCATCCTTTCCTAAACACATCTGACACAACTGCTGGCACCTCTCCACAGCTTCCAGCAGTGCTGCCTCCTTTCCTAAGCACATCCGACACAACTGTCGGCACCTCTCCACAGCTTCCAGCAGTGCTGCCTCCTTTCCTAAGCACATCCGACATAACTTCCGGCACCTCTCCACAGCTTCCAGCAGTGCTGCCTCGTGGTGAGATTATTGATGACAGCCATAAGGAGGATGATGTTTCCATTTCCATGGGGCATTTATCGGAGGAAAGCATGTCTTGGCAAGATTGGGAGAATTCCTTCATGGCGTTCAAAGCCTTTTTTAATGGTGGTGCTAAGATATGTGAGGCCATAACTCTGGGCTTTCATGTGGACTTCCCCATCAATCTCGTGAGGAACCTAGCATGTGCTGTCTTTGGAGTGCGGGCCATTCATAGCATGAAATTATCACATGGTTCTAGTGAGGTGAAAGCTGCTGCCGACACTTTGAACATTAAGCAACAGGAATTGGATAGCCAGCGCAGGGAAGTGCATGCCTTTTTCCTTGCTAAGTGCGTGACGGAGACAACAACCAGATCATCTCCTAGGGCTTCTTTCGTTCTTTTTGGGCATTCTTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PMD

Protein Analysis

215

Amino Acids

23.07

Weight (kDa)

5.7

Isoelectric Point (pI)

57.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018520)

Species	Orthologous Gene IDs
prunus_persica	Prupe.1G179100_v2.0.a1 Prupe.1G193100_v2.0.a1 Prupe.1G203500_v2.0.a1 Prupe.1G421900_v2.0.a1 Prupe.1G571800_v2.0.a1 Prupe.4G258600_v2.0.a1 Prupe.4G286200_v2.0.a1 Prupe.6G176900_v2.0.a1 Prupe.6G176900_v2.0.a1 Prupe.6G176900_v2.0.a1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	122
AccB1I	GGYRCC	3 cut(s)	65, 128, 191
AciI	CCGC	1 cut(s)	448
AcsI	RAATTY	1 cut(s)	319
AfiI	CCNNNNNNNGG	2 cut(s)	253, 547
AgsI	TTSAA	2 cut(s)	337, 514
AluBI	AGCT	4 cut(s)	79, 142, 205, 497
AluI	AGCT	4 cut(s)	79, 142, 205, 497
Alw26I	GTCTC	1 cut(s)	581
AoxI	GGCC	2 cut(s)	372, 450
ApeKI	GCWGC	7 cut(s)	14, 19, 91, 154, 217, 497, 500
ApoI	RAATTY	1 cut(s)	319
Asp700I	GAANNNNTTC	1 cut(s)	323
AspA2I	CCTAGG	1 cut(s)	608
AspLEI	GCGC	3 cut(s)	6, 19, 546
AspS9I	GGNCC	1 cut(s)	450
AsuHPI	GGTGA	2 cut(s)	239, 502
AvrII	CCTAGG	1 cut(s)	608
BanI	GGYRCC	3 cut(s)	65, 128, 191
BauI	CACGAG	2 cut(s)	222, 413
BbvI	GCAGC	7 cut(s)	26, 31, 78, 141, 204, 484, 487
BccI	CCATC	1 cut(s)	413
BcoDI	GTCTC	1 cut(s)	581
BfaI	CTAG	3 cut(s)	425, 483, 609
BisI	GCNGC	7 cut(s)	15, 20, 92, 155, 218, 498, 501
BlnI	CCTAGG	1 cut(s)	608
BlsI	GCNGC	7 cut(s)	16, 21, 93, 156, 219, 499, 502
BmgT120I	GGNCC	1 cut(s)	450
BmiI	GGNNCC	4 cut(s)	67, 130, 193, 422
Bpu10I	CCTNAGC	2 cut(s)	104, 167
BsaJI	CCNNGG	2 cut(s)	273, 608
Bsc4I	CCNNNNNNNGG	2 cut(s)	253, 547
BseDI	CCNNGG	2 cut(s)	273, 608
BseGI	GGATG	4 cut(s)	31, 110, 173, 262
BseLI	CCNNNNNNNGG	2 cut(s)	253, 547
BseXI	GCAGC	7 cut(s)	26, 31, 78, 141, 204, 484, 487
BshFI	GGCC	2 cut(s)	374, 452
BshNI	GGYRCC	3 cut(s)	65, 128, 191
BsiSI	CCGG	1 cut(s)	189
BslI	CCNNNNNNNGG	2 cut(s)	253, 547
BsmAI	GTCTC	1 cut(s)	581
BsmI	GAATGC	1 cut(s)	634
BsnI	GGCC	2 cut(s)	374, 452
Bsp143I	GATC	1 cut(s)	599
Bsp19I	CCATGG	1 cut(s)	273
BspACI	CCGC	1 cut(s)	448
BspANI	GGCC	2 cut(s)	374, 452
BspLI	GGNNCC	4 cut(s)	67, 130, 193, 422
BspT107I	GGYRCC	3 cut(s)	65, 128, 191
BssECI	CCNNGG	2 cut(s)	273, 608
BssMI	GATC	1 cut(s)	599
BssSI	CACGAG	2 cut(s)	222, 413
BssT1I	CCWWGG	2 cut(s)	273, 608
Bst2BI	CACGAG	2 cut(s)	222, 413
Bst4CI	ACNGT	1 cut(s)	124
BstC8I	GCNNGC	4 cut(s)	64, 450, 542, 558
BstDEI	CTNAG	4 cut(s)	104, 167, 360, 573
BstDSI	CCRYGG	1 cut(s)	273
BstF5I	GGATG	4 cut(s)	31, 110, 173, 262
BstHHI	GCGC	3 cut(s)	6, 19, 546
BstKTI	GATC	1 cut(s)	602
BstMAI	GTCTC	1 cut(s)	581
BstMBI	GATC	1 cut(s)	599
BstMWI	GCNNNNNNNGC	1 cut(s)	338
BstNSI	RCATGY	3 cut(s)	301, 432, 560
BstV1I	GCAGC	7 cut(s)	26, 31, 78, 141, 204, 484, 487
BstXI	CCANNNNNNTGG	2 cut(s)	274, 382
BsuRI	GGCC	2 cut(s)	374, 452
BtgI	CCRYGG	1 cut(s)	273
BtsCI	GGATG	4 cut(s)	31, 110, 173, 262
BtsI	GCAGTG	3 cut(s)	93, 156, 219
BtsIMutI	CAGTG	3 cut(s)	93, 156, 219
Cac8I	GCNNGC	4 cut(s)	64, 450, 542, 558
CfoI	GCGC	3 cut(s)	6, 19, 546
Cfr13I	GGNCC	1 cut(s)	450
CviAII	CATG	8 cut(s)	274, 298, 328, 392, 429, 463, 476, 557
DdeI	CTNAG	4 cut(s)	104, 167, 360, 573
DpnI	GATC	1 cut(s)	601
DpnII	GATC	1 cut(s)	599
DrdI	GACNNNNNNGTC	1 cut(s)	122
DseDI	GACNNNNNNGTC	1 cut(s)	122
Eco130I	CCWWGG	2 cut(s)	273, 608
EcoRI	GAATTC	1 cut(s)	319
EcoT14I	CCWWGG	2 cut(s)	273, 608
ErhI	CCWWGG	2 cut(s)	273, 608
FaeI	CATG	8 cut(s)	277, 301, 331, 395, 432, 466, 479, 560
FalI	AAGNNNNNCTT	2 cut(s)	286, 318
FatI	CATG	8 cut(s)	273, 297, 327, 391, 428, 462, 475, 556
FauI	CCCGC	1 cut(s)	441
Fnu4HI	GCNGC	7 cut(s)	15, 20, 92, 155, 218, 498, 501
FokI	GGATG	4 cut(s)	18, 97, 160, 269
Fsp4HI	GCNGC	7 cut(s)	15, 20, 92, 155, 218, 498, 501
FspBI	CTAG	3 cut(s)	425, 483, 609
GlaI	GCGC	3 cut(s)	5, 18, 545
GluI	GCNGC	7 cut(s)	15, 20, 92, 155, 218, 498, 501
HaeIII	GGCC	2 cut(s)	374, 452
HapII	CCGG	1 cut(s)	189
HhaI	GCGC	3 cut(s)	6, 19, 546
Hin1II	CATG	8 cut(s)	277, 301, 331, 395, 432, 466, 479, 560
Hin6I	GCGC	3 cut(s)	4, 17, 544
HinP1I	GCGC	3 cut(s)	4, 17, 544
HpaII	CCGG	1 cut(s)	189
HphI	GGTGA	2 cut(s)	239, 502
Hpy166II	GTNNAC	1 cut(s)	397
Hpy188I	TCNGA	4 cut(s)	52, 115, 178, 289
Hpy188III	TCNNGA	1 cut(s)	415
Hpy8I	GTNNAC	1 cut(s)	397
HpyAV	CCTTC	2 cut(s)	17, 334
HpyCH4III	ACNGT	1 cut(s)	124
HpyCH4V	TGCA	1 cut(s)	556
HpyF10VI	GCNNNNNNNGC	1 cut(s)	338
HpyF3I	CTNAG	4 cut(s)	104, 167, 360, 573
Hsp92II	CATG	8 cut(s)	277, 301, 331, 395, 432, 466, 479, 560
HspAI	GCGC	3 cut(s)	4, 17, 544
Kzo9I	GATC	1 cut(s)	599
Lsp1109I	GCAGC	7 cut(s)	26, 31, 78, 141, 204, 484, 487
MaeI	CTAG	3 cut(s)	425, 483, 609
MaeIII	GTNAC	1 cut(s)	580
MalI	GATC	1 cut(s)	601
MboI	GATC	1 cut(s)	599
MboII	GAAGA	1 cut(s)	630
MluCI	AATT	3 cut(s)	319, 467, 530
MmeI	TCCRAC	2 cut(s)	138, 201
MroXI	GAANNNNTTC	1 cut(s)	323
MseI	TTAA	2 cut(s)	348, 519
MslI	CAYNNNNRTG	1 cut(s)	272
MspI	CCGG	1 cut(s)	189
Mva1269I	GAATGC	1 cut(s)	634
MwoI	GCNNNNNNNGC	1 cut(s)	338
NcoI	CCATGG	1 cut(s)	273
NdeII	GATC	1 cut(s)	599
NlaIII	CATG	8 cut(s)	277, 301, 331, 395, 432, 466, 479, 560
NlaIV	GGNNCC	4 cut(s)	67, 130, 193, 422
NmuCI	GTSAC	1 cut(s)	580
NspI	RCATGY	3 cut(s)	301, 432, 560
PaeI	GCATGC	1 cut(s)	560
PctI	GAATGC	1 cut(s)	634
PdmI	GAANNNNTTC	1 cut(s)	323
PkrI	GCNGC	7 cut(s)	16, 21, 93, 156, 219, 499, 502
PspN4I	GGNNCC	4 cut(s)	67, 130, 193, 422
PspPI	GGNCC	1 cut(s)	450
RseI	CAYNNNNRTG	1 cut(s)	272
SaqAI	TTAA	2 cut(s)	348, 519
SatI	GCNGC	7 cut(s)	15, 20, 92, 155, 218, 498, 501
Sau3AI	GATC	1 cut(s)	599
Sau96I	GGNCC	1 cut(s)	450
SetI	ASST	9 cut(s)	71, 81, 134, 144, 197, 207, 426, 492, 499
SmiMI	CAYNNNNRTG	1 cut(s)	272
SphI	GCATGC	1 cut(s)	560
Sse9I	AATT	3 cut(s)	319, 467, 530
SsiI	CCGC	1 cut(s)	448
SspMI	CTAG	3 cut(s)	425, 483, 609
StyI	CCWWGG	2 cut(s)	273, 608
TaaI	ACNGT	1 cut(s)	124
TasI	AATT	3 cut(s)	319, 467, 530
Tru1I	TTAA	2 cut(s)	348, 519
Tru9I	TTAA	2 cut(s)	348, 519
TscAI	CASTG	3 cut(s)	93, 156, 219
TseFI	GTSAC	1 cut(s)	580
TseI	GCWGC	7 cut(s)	14, 19, 91, 154, 217, 497, 500
Tsp45I	GTSAC	1 cut(s)	580
TspDTI	ATGAA	5 cut(s)	316, 380, 446, 479, 630
TspGWI	ACGGA	1 cut(s)	599
TspRI	CASTG	3 cut(s)	93, 156, 219
XapI	RAATTY	1 cut(s)	319
XceI	RCATGY	3 cut(s)	301, 432, 560
XmaJI	CCTAGG	1 cut(s)	608
XmnI	GAANNNNTTC	1 cut(s)	323
XspI	CTAG	3 cut(s)	425, 483, 609

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.