Prupe.1G421900_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0018520
Physical Location & Seq
Reverse (-)
36427829 .. 36431528
3700 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G421900.1

Sequence Viewer

Length: 210 bp
ATGCCTCAAAGCTGGTCTGCAACTTCTGTGTTCATCCATGGCTGGTGTATACGTCTCTGGCACAGGCAGGGGAGGGTGCCGAAAGCCTGCGTTGTATCCATTGTCGCTGGAAGCTTCGAGTTTACCAATTTCGCAACTTGGCAATTTAGATTTCTATCTCAATTTCTCAGGACTCACATAATAAGTCCCAATGACCTTTGTGATGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

70

Amino Acids

8.06

Weight (kDa)

8.68

Isoelectric Point (pI)

56.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 76
AccI GTMKAC 1 cut(s) 49
AluBI AGCT 2 cut(s) 12, 114
AluI AGCT 2 cut(s) 12, 114
Alw26I GTCTC 1 cut(s) 59
BanI GGYRCC 1 cut(s) 76
BciVI GTATCC 1 cut(s) 106
BcoDI GTCTC 1 cut(s) 59
BfuI GTATCC 1 cut(s) 106
BmiI GGNNCC 1 cut(s) 78
BsaBI GATNNNNATC 1 cut(s) 154
BsaJI CCNNGG 1 cut(s) 37
Bse8I GATNNNNATC 1 cut(s) 154
BseDI CCNNGG 1 cut(s) 37
BseGI GGATG 1 cut(s) 33
BseJI GATNNNNATC 1 cut(s) 154
BseMII CTCAG 1 cut(s) 181
BshNI GGYRCC 1 cut(s) 76
BslFI GGGAC 1 cut(s) 171
BsmAI GTCTC 1 cut(s) 59
BsmBI CGTCTC 1 cut(s) 59
BsmFI GGGAC 1 cut(s) 171
Bsp19I CCATGG 1 cut(s) 37
BspCNI CTCAG 1 cut(s) 180
BspLI GGNNCC 1 cut(s) 78
BspT107I GGYRCC 1 cut(s) 76
BssECI CCNNGG 1 cut(s) 37
BssNAI GTATAC 1 cut(s) 50
BssT1I CCWWGG 1 cut(s) 37
Bst1107I GTATAC 1 cut(s) 50
BstC8I GCNNGC 1 cut(s) 88
BstDEI CTNAG 1 cut(s) 167
BstDSI CCRYGG 1 cut(s) 37
BstF5I GGATG 1 cut(s) 33
BstMAI GTCTC 1 cut(s) 59
BstZ17I GTATAC 1 cut(s) 50
BsuI GTATCC 1 cut(s) 106
BtgI CCRYGG 1 cut(s) 37
BtsCI GGATG 1 cut(s) 33
Cac8I GCNNGC 1 cut(s) 88
CviAII CATG 1 cut(s) 38
CviJI RGCY 4 cut(s) 12, 42, 86, 114
CviKI_1 RGCY 4 cut(s) 12, 42, 86, 114
DdeI CTNAG 1 cut(s) 167
Eco130I CCWWGG 1 cut(s) 37
EcoT14I CCWWGG 1 cut(s) 37
ErhI CCWWGG 1 cut(s) 37
Esp3I CGTCTC 1 cut(s) 59
FaeI CATG 1 cut(s) 41
FaiI YATR 3 cut(s) 39, 50, 179
FaqI GGGAC 1 cut(s) 171
FatI CATG 1 cut(s) 37
FblI GTMKAC 1 cut(s) 49
FokI GGATG 1 cut(s) 20
Hin1II CATG 1 cut(s) 41
HindIII AAGCTT 1 cut(s) 112
HinfI GANTC 1 cut(s) 172
Hpy166II GTNNAC 2 cut(s) 50, 123
Hpy188III TCNNGA 1 cut(s) 169
Hpy8I GTNNAC 2 cut(s) 50, 123
HpyCH4IV ACGT 1 cut(s) 52
HpyCH4V TGCA 1 cut(s) 20
HpyF3I CTNAG 1 cut(s) 167
HpySE526I ACGT 1 cut(s) 52
Hsp92II CATG 1 cut(s) 41
LpnPI CCDG 7 cut(s) 28, 43, 49, 53, 93, 100, 154
MaeII ACGT 1 cut(s) 52
MluCI AATT 3 cut(s) 127, 143, 161
MlyI GAGTC 1 cut(s) 166
MnlI CCTC 2 cut(s) 15, 66
NcoI CCATGG 1 cut(s) 37
NlaIII CATG 1 cut(s) 41
NlaIV GGNNCC 1 cut(s) 78
PleI GAGTC 1 cut(s) 166
PpsI GAGTC 1 cut(s) 166
PspN4I GGNNCC 1 cut(s) 78
SchI GAGTC 1 cut(s) 166
SetI ASST 4 cut(s) 14, 55, 116, 198
Sse9I AATT 3 cut(s) 127, 143, 161
StyI CCWWGG 1 cut(s) 37
TaiI ACGT 1 cut(s) 55
TaqI TCGA 1 cut(s) 117
TasI AATT 3 cut(s) 127, 143, 161
TspDTI ATGAA 1 cut(s) 22
XmiI GTMKAC 1 cut(s) 49
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.