Prupe.4G258600_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0018520
Physical Location & Seq
Reverse (-)
18423935 .. 18426101
2167 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G258600.1

Sequence Viewer

Length: 201 bp
ATGCCTCAAAGCTGGTCTGCAACTTCTGTGTTCATCCATGGCTGGTGTATACGTCTCTGGCACAGGCAGGGAGGGTGCCGAAAGCTTGTGTTGTATCCATTGTCACTGGAAGCTTCGAGTTTACCAATTTCGCAACTTGGCAATTTGGATTTCTATCTCGATTTCTCAGTAAATAGTTCTGCTCCTTCACTGGAATCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

67

Amino Acids

7.4

Weight (kDa)

6.69

Isoelectric Point (pI)

62.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 75
AccI GTMKAC 1 cut(s) 49
AluBI AGCT 3 cut(s) 12, 85, 113
AluI AGCT 3 cut(s) 12, 85, 113
Alw26I GTCTC 1 cut(s) 59
BanI GGYRCC 1 cut(s) 75
BciVI GTATCC 1 cut(s) 105
BcoDI GTCTC 1 cut(s) 59
BfuI GTATCC 1 cut(s) 105
BmiI GGNNCC 1 cut(s) 77
BsaBI GATNNNNATC 1 cut(s) 153
BsaJI CCNNGG 1 cut(s) 37
Bse1I ACTGG 2 cut(s) 111, 195
Bse8I GATNNNNATC 1 cut(s) 153
BseDI CCNNGG 1 cut(s) 37
BseGI GGATG 1 cut(s) 33
BseJI GATNNNNATC 1 cut(s) 153
BseMII CTCAG 1 cut(s) 180
BseNI ACTGG 2 cut(s) 111, 195
BshNI GGYRCC 1 cut(s) 75
BsmAI GTCTC 1 cut(s) 59
BsmBI CGTCTC 1 cut(s) 59
Bsp19I CCATGG 1 cut(s) 37
BspCNI CTCAG 1 cut(s) 179
BspLI GGNNCC 1 cut(s) 77
BspT107I GGYRCC 1 cut(s) 75
BsrI ACTGG 2 cut(s) 111, 195
BssECI CCNNGG 1 cut(s) 37
BssNAI GTATAC 1 cut(s) 50
BssT1I CCWWGG 1 cut(s) 37
Bst1107I GTATAC 1 cut(s) 50
BstDEI CTNAG 1 cut(s) 166
BstDSI CCRYGG 1 cut(s) 37
BstF5I GGATG 1 cut(s) 33
BstMAI GTCTC 1 cut(s) 59
BstZ17I GTATAC 1 cut(s) 50
BsuI GTATCC 1 cut(s) 105
BtgI CCRYGG 1 cut(s) 37
BtsCI GGATG 1 cut(s) 33
BtsIMutI CAGTG 2 cut(s) 104, 188
CviAII CATG 1 cut(s) 38
CviJI RGCY 4 cut(s) 12, 42, 85, 113
CviKI_1 RGCY 4 cut(s) 12, 42, 85, 113
DdeI CTNAG 1 cut(s) 166
Eco130I CCWWGG 1 cut(s) 37
EcoT14I CCWWGG 1 cut(s) 37
ErhI CCWWGG 1 cut(s) 37
Esp3I CGTCTC 1 cut(s) 59
FaeI CATG 1 cut(s) 41
FaiI YATR 2 cut(s) 39, 50
FatI CATG 1 cut(s) 37
FblI GTMKAC 1 cut(s) 49
FokI GGATG 1 cut(s) 20
Hin1II CATG 1 cut(s) 41
HindIII AAGCTT 2 cut(s) 83, 111
HinfI GANTC 1 cut(s) 194
Hpy166II GTNNAC 2 cut(s) 50, 122
Hpy188III TCNNGA 2 cut(s) 158, 198
Hpy8I GTNNAC 2 cut(s) 50, 122
HpyAV CCTTC 1 cut(s) 195
HpyCH4IV ACGT 1 cut(s) 52
HpyCH4V TGCA 1 cut(s) 20
HpyF3I CTNAG 1 cut(s) 166
HpySE526I ACGT 1 cut(s) 52
Hsp92II CATG 1 cut(s) 41
LmnI GCTCC 1 cut(s) 187
LpnPI CCDG 6 cut(s) 28, 43, 49, 53, 92, 176
MaeII ACGT 1 cut(s) 52
MaeIII GTNAC 1 cut(s) 102
MluCI AATT 2 cut(s) 126, 142
MnlI CCTC 2 cut(s) 15, 65
NcoI CCATGG 1 cut(s) 37
NlaIII CATG 1 cut(s) 41
NlaIV GGNNCC 1 cut(s) 77
NmuCI GTSAC 1 cut(s) 102
PfeI GAWTC 1 cut(s) 194
PspN4I GGNNCC 1 cut(s) 77
SetI ASST 4 cut(s) 14, 55, 87, 115
Sse9I AATT 2 cut(s) 126, 142
StyI CCWWGG 1 cut(s) 37
TaiI ACGT 1 cut(s) 55
TaqI TCGA 2 cut(s) 116, 159
TasI AATT 2 cut(s) 126, 142
TfiI GAWTC 1 cut(s) 194
TscAI CASTG 2 cut(s) 111, 195
TseFI GTSAC 1 cut(s) 102
Tsp45I GTSAC 1 cut(s) 102
TspDTI ATGAA 1 cut(s) 22
TspRI CASTG 2 cut(s) 111, 195
XmiI GTMKAC 1 cut(s) 49
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.