Prupe.4G286200_v2.0.a1

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0018520
Physical Location & Seq
Reverse (-)
25030407 .. 25035064
4658 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G286200.1

Sequence Viewer

Length: 804 bp
ATGGCTGGTGTATACGTCTCTGGCACAGGCAGGGGAGGGTGCCGAAAGCCTGCGTTGTATCCATTGTCGCTGGAAGCTTCGAGTTTACCAATTTCGCAACTTGGCAATTTGGATTTCTATCTCGATTTCTCAGTTGAGAGCATCTCACAAGTCGCGGAGGATACACTTCCTACTCCTCCTCTTGGGACGTCCAGCGTAGCTGCTGACACTGCCCTGCGTCTTCCAGCAGCGCAACCTCCTGCTCATCCTTTCCTAAGCACATCTGACACAACTGCTGGCACCTCTCCACAGCTTCCAGCAGTGCTGCCTCCTACTCCTCTTTTCCTAAGCACATCCGACATAACTTCCGGCACCTCTCCACAGCTTCCAGCAGTGCTGCCTCGTGGTGAGATTATTGATGACAGCCATAAGGAGGATGATGTTTCCATTTCCATGGGGCATTTATCGGAGGAAAGCATGTCTTGGCAAGATTGGGAGAATTCCTTCATGGCGTTCAAAGCCTTTTTTGATGGTGGTGCTAAGATATGTGAGGCCATAACTCTGGGCTTTCATGTGGACTTCCCCATCAATCTCGTGAGGAACCTAGCATGTGCTGTCTTTGGAGTGCGGGCCATTCATAGCATGAAATTATCACATGGTTCTAGTGAGGTGAAAGCTGATGCCGACACTTTGAACATTAAGCAACAGGAATTGGATAGCCAGCGCAGGGAAGTGCATGCCTTTTCCCTTGCTAAGTGCGTGACGGAGACAACAACCAGATCATCTCCTAGGGCTTCTTTCGTTCTTTTTGGGCATTCTTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

268

Amino Acids

28.48

Weight (kDa)

5.08

Isoelectric Point (pI)

49.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 191
AccB1I GGYRCC 3 cut(s) 39, 278, 350
AccI GTMKAC 1 cut(s) 12
AccII CGCG 1 cut(s) 155
AciI CCGC 2 cut(s) 155, 607
AcsI RAATTY 1 cut(s) 478
AcyI GRCGYC 1 cut(s) 188
AfiI CCNNNNNNNGG 3 cut(s) 182, 412, 706
AgsI TTSAA 2 cut(s) 496, 673
AluBI AGCT 5 cut(s) 77, 200, 292, 364, 656
AluI AGCT 5 cut(s) 77, 200, 292, 364, 656
Alw26I GTCTC 2 cut(s) 22, 740
AoxI GGCC 2 cut(s) 531, 609
ApeKI GCWGC 4 cut(s) 200, 227, 304, 376
ApoI RAATTY 1 cut(s) 478
Asp700I GAANNNNTTC 1 cut(s) 482
AspA2I CCTAGG 1 cut(s) 767
AspLEI GCGC 2 cut(s) 232, 705
AspS9I GGNCC 1 cut(s) 609
AsuHPI GGTGA 2 cut(s) 398, 661
AvrII CCTAGG 1 cut(s) 767
BanI GGYRCC 3 cut(s) 39, 278, 350
BauI CACGAG 2 cut(s) 381, 572
BbsI GAAGAC 1 cut(s) 212
BbvI GCAGC 4 cut(s) 187, 239, 291, 363
BccI CCATC 2 cut(s) 503, 572
BciVI GTATCC 2 cut(s) 69, 154
BcoDI GTCTC 2 cut(s) 22, 740
BfaI CTAG 3 cut(s) 584, 642, 768
BfuI GTATCC 2 cut(s) 69, 154
BisI GCNGC 4 cut(s) 201, 228, 305, 377
BlnI CCTAGG 1 cut(s) 767
BlsI GCNGC 4 cut(s) 202, 229, 306, 378
BmgT120I GGNCC 1 cut(s) 609
BmiI GGNNCC 4 cut(s) 41, 280, 352, 581
BmsI GCATC 2 cut(s) 150, 649
BpiI GAAGAC 1 cut(s) 212
BplI GAGNNNNNCTC 2 cut(s) 128, 160
Bpu10I CCTNAGC 2 cut(s) 254, 326
BsaBI GATNNNNATC 1 cut(s) 117
BsaHI GRCGYC 1 cut(s) 188
BsaJI CCNNGG 2 cut(s) 432, 767
Bsc4I CCNNNNNNNGG 3 cut(s) 182, 412, 706
Bse8I GATNNNNATC 1 cut(s) 117
BseDI CCNNGG 2 cut(s) 432, 767
BseGI GGATG 3 cut(s) 244, 332, 421
BseJI GATNNNNATC 1 cut(s) 117
BseLI CCNNNNNNNGG 3 cut(s) 182, 412, 706
BseMII CTCAG 1 cut(s) 144
BseRI GAGGAG 3 cut(s) 165, 168, 306
BseXI GCAGC 4 cut(s) 187, 239, 291, 363
Bsh1236I CGCG 1 cut(s) 155
BshFI GGCC 2 cut(s) 533, 611
BshNI GGYRCC 3 cut(s) 39, 278, 350
BsiSI CCGG 1 cut(s) 348
BslFI GGGAC 1 cut(s) 199
BslI CCNNNNNNNGG 3 cut(s) 182, 412, 706
BsmAI GTCTC 2 cut(s) 22, 740
BsmBI CGTCTC 1 cut(s) 22
BsmFI GGGAC 1 cut(s) 199
BsmI GAATGC 1 cut(s) 793
BsnI GGCC 2 cut(s) 533, 611
Bsp143I GATC 1 cut(s) 758
Bsp19I CCATGG 1 cut(s) 432
BspACI CCGC 2 cut(s) 155, 607
BspANI GGCC 2 cut(s) 533, 611
BspCNI CTCAG 1 cut(s) 143
BspFNI CGCG 1 cut(s) 155
BspLI GGNNCC 4 cut(s) 41, 280, 352, 581
BspT107I GGYRCC 3 cut(s) 39, 278, 350
BssECI CCNNGG 2 cut(s) 432, 767
BssMI GATC 1 cut(s) 758
BssNAI GTATAC 1 cut(s) 13
BssNI GRCGYC 1 cut(s) 188
BssSI CACGAG 2 cut(s) 381, 572
BssT1I CCWWGG 2 cut(s) 432, 767
Bst1107I GTATAC 1 cut(s) 13
Bst2BI CACGAG 2 cut(s) 381, 572
BstACI GRCGYC 1 cut(s) 188
BstC8I GCNNGC 5 cut(s) 51, 277, 609, 701, 717
BstDEI CTNAG 5 cut(s) 130, 254, 326, 519, 732
BstDSI CCRYGG 1 cut(s) 432
BstF5I GGATG 3 cut(s) 244, 332, 421
BstFNI CGCG 1 cut(s) 155
BstHHI GCGC 2 cut(s) 232, 705
BstKTI GATC 1 cut(s) 761
BstMAI GTCTC 2 cut(s) 22, 740
BstMBI GATC 1 cut(s) 758
BstMWI GCNNNNNNNGC 2 cut(s) 209, 497
BstNSI RCATGY 3 cut(s) 460, 591, 719
BstUI CGCG 1 cut(s) 155
BstV1I GCAGC 4 cut(s) 187, 239, 291, 363
BstV2I GAAGAC 1 cut(s) 212
BstXI CCANNNNNNTGG 2 cut(s) 433, 541
BstZ17I GTATAC 1 cut(s) 13
BsuI GTATCC 2 cut(s) 69, 154
BsuRI GGCC 2 cut(s) 533, 611
BtgI CCRYGG 1 cut(s) 432
BtsCI GGATG 3 cut(s) 244, 332, 421
BtsI GCAGTG 3 cut(s) 207, 306, 378
BtsIMutI CAGTG 3 cut(s) 207, 306, 378
Cac8I GCNNGC 5 cut(s) 51, 277, 609, 701, 717
CfoI GCGC 2 cut(s) 232, 705
Cfr13I GGNCC 1 cut(s) 609
CseI GACGC 1 cut(s) 206
CviAII CATG 8 cut(s) 433, 457, 487, 551, 588, 622, 635, 716
DdeI CTNAG 5 cut(s) 130, 254, 326, 519, 732
DpnI GATC 1 cut(s) 760
DpnII GATC 1 cut(s) 758
Eco130I CCWWGG 2 cut(s) 432, 767
EcoRI GAATTC 1 cut(s) 478
EcoT14I CCWWGG 2 cut(s) 432, 767
ErhI CCWWGG 2 cut(s) 432, 767
Esp3I CGTCTC 1 cut(s) 22
FaeI CATG 8 cut(s) 436, 460, 490, 554, 591, 625, 638, 719
FalI AAGNNNNNCTT 2 cut(s) 445, 477
FaqI GGGAC 1 cut(s) 199
FatI CATG 8 cut(s) 432, 456, 486, 550, 587, 621, 634, 715
FauI CCCGC 1 cut(s) 600
FblI GTMKAC 1 cut(s) 12
Fnu4HI GCNGC 4 cut(s) 201, 228, 305, 377
FokI GGATG 3 cut(s) 231, 319, 428
Fsp4HI GCNGC 4 cut(s) 201, 228, 305, 377
FspBI CTAG 3 cut(s) 584, 642, 768
GlaI GCGC 2 cut(s) 231, 704
GluI GCNGC 4 cut(s) 201, 228, 305, 377
HaeIII GGCC 2 cut(s) 533, 611
HapII CCGG 1 cut(s) 348
HgaI GACGC 1 cut(s) 206
HhaI GCGC 2 cut(s) 232, 705
Hin1I GRCGYC 1 cut(s) 188
Hin1II CATG 8 cut(s) 436, 460, 490, 554, 591, 625, 638, 719
Hin6I GCGC 2 cut(s) 230, 703
HinP1I GCGC 2 cut(s) 230, 703
HindIII AAGCTT 1 cut(s) 75
HpaII CCGG 1 cut(s) 348
HphI GGTGA 2 cut(s) 398, 661
Hpy166II GTNNAC 3 cut(s) 13, 86, 556
Hpy188I TCNGA 3 cut(s) 265, 337, 448
Hpy188III TCNNGA 2 cut(s) 122, 574
Hpy8I GTNNAC 3 cut(s) 13, 86, 556
HpyAV CCTTC 1 cut(s) 493
HpyCH4IV ACGT 2 cut(s) 15, 188
HpyCH4V TGCA 1 cut(s) 715
HpyF10VI GCNNNNNNNGC 2 cut(s) 209, 497
HpyF3I CTNAG 5 cut(s) 130, 254, 326, 519, 732
HpySE526I ACGT 2 cut(s) 15, 188
Hsp92I GRCGYC 1 cut(s) 188
Hsp92II CATG 8 cut(s) 436, 460, 490, 554, 591, 625, 638, 719
HspAI GCGC 2 cut(s) 230, 703
Kzo9I GATC 1 cut(s) 758
Lsp1109I GCAGC 4 cut(s) 187, 239, 291, 363
LweI GCATC 2 cut(s) 150, 649
MaeI CTAG 3 cut(s) 584, 642, 768
MaeII ACGT 2 cut(s) 15, 188
MaeIII GTNAC 1 cut(s) 739
MalI GATC 1 cut(s) 760
MboI GATC 1 cut(s) 758
MboII GAAGA 2 cut(s) 212, 789
MluCI AATT 5 cut(s) 90, 106, 478, 626, 689
MmeI TCCRAC 1 cut(s) 360
MroXI GAANNNNTTC 1 cut(s) 482
MseI TTAA 1 cut(s) 678
MslI CAYNNNNRTG 1 cut(s) 431
MspI CCGG 1 cut(s) 348
Mva1269I GAATGC 1 cut(s) 793
MvnI CGCG 1 cut(s) 155
MwoI GCNNNNNNNGC 2 cut(s) 209, 497
NcoI CCATGG 1 cut(s) 432
NdeII GATC 1 cut(s) 758
NlaIII CATG 8 cut(s) 436, 460, 490, 554, 591, 625, 638, 719
NlaIV GGNNCC 4 cut(s) 41, 280, 352, 581
NmuCI GTSAC 1 cut(s) 739
NspI RCATGY 3 cut(s) 460, 591, 719
PaeI GCATGC 1 cut(s) 719
PctI GAATGC 1 cut(s) 793
PdmI GAANNNNTTC 1 cut(s) 482
PkrI GCNGC 4 cut(s) 202, 229, 306, 378
PspN4I GGNNCC 4 cut(s) 41, 280, 352, 581
PspPI GGNCC 1 cut(s) 609
RseI CAYNNNNRTG 1 cut(s) 431
SaqAI TTAA 1 cut(s) 678
SatI GCNGC 4 cut(s) 201, 228, 305, 377
Sau3AI GATC 1 cut(s) 758
Sau96I GGNCC 1 cut(s) 609
SfaNI GCATC 2 cut(s) 150, 649
SmiMI CAYNNNNRTG 1 cut(s) 431
SphI GCATGC 1 cut(s) 719
Sse9I AATT 5 cut(s) 90, 106, 478, 626, 689
SsiI CCGC 2 cut(s) 155, 607
SspMI CTAG 3 cut(s) 584, 642, 768
StyI CCWWGG 2 cut(s) 432, 767
TaiI ACGT 2 cut(s) 18, 191
TaqI TCGA 2 cut(s) 80, 123
TasI AATT 5 cut(s) 90, 106, 478, 626, 689
Tru1I TTAA 1 cut(s) 678
Tru9I TTAA 1 cut(s) 678
TscAI CASTG 3 cut(s) 214, 306, 378
TseFI GTSAC 1 cut(s) 739
TseI GCWGC 4 cut(s) 200, 227, 304, 376
Tsp45I GTSAC 1 cut(s) 739
TspDTI ATGAA 5 cut(s) 475, 539, 605, 638, 789
TspGWI ACGGA 1 cut(s) 758
TspRI CASTG 3 cut(s) 214, 306, 378
XapI RAATTY 1 cut(s) 478
XceI RCATGY 3 cut(s) 460, 591, 719
XmaJI CCTAGG 1 cut(s) 767
XmiI GTMKAC 1 cut(s) 12
XmnI GAANNNNTTC 1 cut(s) 482
XspI CTAG 3 cut(s) 584, 642, 768
ZraI GACGTC 1 cut(s) 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.