Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0019799

Physical Location & Seq

Genomic Coordinates Reverse (-)

16759554 .. 16764490

Gene Structure 4937 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G184900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGTTACCTATATTTTTCTTCGTCCACTTCATTGGCACCTTTTCTGCTTCAGAAATCGAAACCGAAATTGCGAGTAATCACCCAAGAGCACCCGGTGTAAAGACTGGCCAGACTCGAAAAACTTCCTTTCTCATTCCGCACCACACCTGCTATCCTGTAACTGAAGTCCTTTGTGCTCAGATAAAGGAGGTAGGGTTCACACTCAGAAAGAGAGAAGATTTAAATTCGTACAGGAGGGATAGTGTTCAAGTTATTTATCAGTACTTGGACGAGAACAAGTCATTGATTCTGAAGATCGTTCAGAGCCAGAATACTGGGAAATTGAGTGAATGCGCAGAATGTTGTTTCGCTAGAGCACCAATGAAGAAAGCATTTAGATTTGATGTGTTTGATGTCAATGGTATGAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTGGTTTGGGATTTTTGAAATTTTTTTTTGTGAATTAATTTTGCTGGGTTTAATGATATTATCAGCTAGCAGCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003712 GO:0003713 GO:0007275 GO:0007389 GO:0008150 GO:0008283 GO:0009889 GO:0009891 GO:0009893 GO:0009955 GO:0010556 GO:0010557 GO:0010604 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0045935 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SSXT

Protein Analysis

174

Amino Acids

19.66

Weight (kDa)

7.62

Isoelectric Point (pI)

39.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019799)

Species	Orthologous Gene IDs
prunus_persica	Prupe.1G184900_v2.0.a1 Prupe.1G184900_v2.0.a1 Prupe.5G064200_v2.0.a1 Prupe.6G045700_v2.0.a1 Prupe.6G163900_v2.0.a1
rosa_samantha	Rh1AG140500 Rh4CG194500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	155
Acc16I	TGCGCA	1 cut(s)	334
Acc36I	ACCTGC	1 cut(s)	155
AccB1I	GGYRCC	1 cut(s)	35
AciI	CCGC	1 cut(s)	137
AcoI	YGGCCR	1 cut(s)	106
AcsI	RAATTY	2 cut(s)	223, 462
AcuI	CTGAAG	3 cut(s)	33, 183, 311
AdeI	CACNNNGTG	1 cut(s)	95
AfaI	GTAC	2 cut(s)	230, 263
AgsI	TTSAA	2 cut(s)	248, 461
AloI	GAACNNNNNNTCC	2 cut(s)	179, 211
AluBI	AGCT	1 cut(s)	509
AluI	AGCT	1 cut(s)	509
Alw21I	GWGCWC	3 cut(s)	91, 178, 358
AoxI	GGCC	1 cut(s)	106
ApeKI	GCWGC	1 cut(s)	513
ApoI	RAATTY	2 cut(s)	223, 462
AseI	ATTAAT	1 cut(s)	479
Asp700I	GAANNNNTTC	1 cut(s)	121
AspLEI	GCGC	1 cut(s)	335
AsuC2I	CCSGG	1 cut(s)	93
AsuHPI	GGTGA	1 cut(s)	71
AsuNHI	GCTAGC	1 cut(s)	509
BalI	TGGCCA	1 cut(s)	108
BanI	GGYRCC	1 cut(s)	35
Bbv12I	GWGCWC	3 cut(s)	91, 178, 358
BcnI	CCSGG	1 cut(s)	93
BfaI	CTAG	2 cut(s)	351, 510
BfuAI	ACCTGC	1 cut(s)	155
BisI	GCNGC	1 cut(s)	514
BlsI	GCNGC	1 cut(s)	515
BmcAI	AGTACT	1 cut(s)	263
Bme1390I	CCNGG	1 cut(s)	93
BmiI	GGNNCC	1 cut(s)	37
BmrFI	CCNGG	1 cut(s)	93
BmrI	ACTGGG	1 cut(s)	324
BmtI	GCTAGC	1 cut(s)	513
BmuI	ACTGGG	1 cut(s)	324
BpuMI	CCSGG	1 cut(s)	93
BsaXI	ACNNNNNCTCC	4 cut(s)	179, 209, 226, 256
Bse1I	ACTGG	2 cut(s)	109, 319
BseMII	CTCAG	2 cut(s)	191, 217
BseNI	ACTGG	2 cut(s)	109, 319
BseYI	CCCAGC	1 cut(s)	487
BshFI	GGCC	1 cut(s)	108
BshNI	GGYRCC	1 cut(s)	35
BsiHKAI	GWGCWC	3 cut(s)	91, 178, 358
BsiSI	CCGG	1 cut(s)	93
BsmI	GAATGC	1 cut(s)	335
BsnI	GGCC	1 cut(s)	108
Bsp1286I	GDGCHC	3 cut(s)	91, 178, 358
Bsp143I	GATC	1 cut(s)	294
BspACI	CCGC	1 cut(s)	137
BspANI	GGCC	1 cut(s)	108
BspCNI	CTCAG	2 cut(s)	190, 216
BspLI	GGNNCC	1 cut(s)	37
BspMI	ACCTGC	1 cut(s)	155
BspOI	GCTAGC	1 cut(s)	513
BspT107I	GGYRCC	1 cut(s)	35
BsrI	ACTGG	2 cut(s)	109, 319
BssMI	GATC	1 cut(s)	294
BstC8I	GCNNGC	1 cut(s)	511
BstDEI	CTNAG	2 cut(s)	177, 203
BstHHI	GCGC	1 cut(s)	335
BstKTI	GATC	1 cut(s)	297
BstMBI	GATC	1 cut(s)	294
BstSCI	CCNGG	1 cut(s)	91
BstXI	CCANNNNNNTGG	2 cut(s)	32, 314
BsuRI	GGCC	1 cut(s)	108
BveI	ACCTGC	1 cut(s)	155
Cac8I	GCNNGC	1 cut(s)	511
CfoI	GCGC	1 cut(s)	335
Csp6I	GTAC	2 cut(s)	229, 262
CviJI	RGCY	3 cut(s)	108, 306, 509
CviKI_1	RGCY	3 cut(s)	108, 306, 509
CviQI	GTAC	2 cut(s)	229, 262
DdeI	CTNAG	2 cut(s)	177, 203
DpnI	GATC	1 cut(s)	296
DpnII	GATC	1 cut(s)	294
DraI	TTTAAA	1 cut(s)	222
DraIII	CACNNNGTG	1 cut(s)	95
EaeI	YGGCCR	1 cut(s)	106
Eco57I	CTGAAG	3 cut(s)	33, 183, 311
FaiI	YATR	2 cut(s)	11, 404
Fnu4HI	GCNGC	1 cut(s)	514
Fsp4HI	GCNGC	1 cut(s)	514
FspBI	CTAG	2 cut(s)	351, 510
FspI	TGCGCA	1 cut(s)	334
GlaI	GCGC	1 cut(s)	334
GluI	GCNGC	1 cut(s)	514
GsaI	CCCAGC	1 cut(s)	491
HaeIII	GGCC	1 cut(s)	108
HapII	CCGG	1 cut(s)	93
HhaI	GCGC	1 cut(s)	335
Hin6I	GCGC	1 cut(s)	333
HinP1I	GCGC	1 cut(s)	333
HinfI	GANTC	3 cut(s)	112, 286, 406
HpaII	CCGG	1 cut(s)	93
HphI	GGTGA	1 cut(s)	71
Hpy166II	GTNNAC	2 cut(s)	25, 198
Hpy188I	TCNGA	5 cut(s)	52, 180, 206, 291, 303
Hpy8I	GTNNAC	2 cut(s)	25, 198
HpyF3I	CTNAG	2 cut(s)	177, 203
HspAI	GCGC	1 cut(s)	333
Kzo9I	GATC	1 cut(s)	294
LpnPI	CCDG	9 cut(s)	90, 106, 122, 160, 168, 217, 300, 320, 473
MaeI	CTAG	2 cut(s)	351, 510
MaeIII	GTNAC	2 cut(s)	3, 157
MalI	GATC	1 cut(s)	296
MboI	GATC	1 cut(s)	294
MboII	GAAGA	4 cut(s)	10, 227, 304, 376
MhlI	GDGCHC	3 cut(s)	91, 178, 358
MlsI	TGGCCA	1 cut(s)	108
MluCI	AATT	6 cut(s)	66, 223, 320, 462, 476, 480
MluNI	TGGCCA	1 cut(s)	108
MlyI	GAGTC	1 cut(s)	106
MnlI	CCTC	2 cut(s)	181, 228
Mox20I	TGGCCA	1 cut(s)	108
MroXI	GAANNNNTTC	1 cut(s)	121
MscI	TGGCCA	1 cut(s)	108
MseI	TTAA	3 cut(s)	221, 479, 494
Msp20I	TGGCCA	1 cut(s)	108
MspI	CCGG	1 cut(s)	93
MspR9I	CCNGG	1 cut(s)	93
Mva1269I	GAATGC	1 cut(s)	335
NciI	CCSGG	1 cut(s)	93
NdeII	GATC	1 cut(s)	294
NheI	GCTAGC	1 cut(s)	509
NlaIV	GGNNCC	1 cut(s)	37
NsbI	TGCGCA	1 cut(s)	334
PaqCI	CACCTGC	1 cut(s)	155
PctI	GAATGC	1 cut(s)	335
PdmI	GAANNNNTTC	1 cut(s)	121
PfeI	GAWTC	2 cut(s)	286, 406
PkrI	GCNGC	1 cut(s)	515
PleI	GAGTC	1 cut(s)	106
PpsI	GAGTC	1 cut(s)	106
PshBI	ATTAAT	1 cut(s)	479
PspFI	CCCAGC	1 cut(s)	487
PspN4I	GGNNCC	1 cut(s)	37
RsaI	GTAC	2 cut(s)	230, 263
RsaNI	GTAC	2 cut(s)	229, 262
SaqAI	TTAA	3 cut(s)	221, 479, 494
SatI	GCNGC	1 cut(s)	514
Sau3AI	GATC	1 cut(s)	294
ScaI	AGTACT	1 cut(s)	263
SchI	GAGTC	1 cut(s)	106
ScrFI	CCNGG	1 cut(s)	93
SduI	GDGCHC	3 cut(s)	91, 178, 358
SetI	ASST	5 cut(s)	10, 41, 149, 192, 511
SmiI	ATTTAAAT	1 cut(s)	222
Sse9I	AATT	6 cut(s)	66, 223, 320, 462, 476, 480
SsiI	CCGC	1 cut(s)	137
SspMI	CTAG	2 cut(s)	351, 510
StyD4I	CCNGG	1 cut(s)	91
SwaI	ATTTAAAT	1 cut(s)	222
TaqI	TCGA	2 cut(s)	57, 115
TasI	AATT	6 cut(s)	66, 223, 320, 462, 476, 480
TatI	WGTACW	1 cut(s)	261
TfiI	GAWTC	2 cut(s)	286, 406
Tru1I	TTAA	3 cut(s)	221, 479, 494
Tru9I	TTAA	3 cut(s)	221, 479, 494
TseI	GCWGC	1 cut(s)	513
TspDTI	ATGAA	3 cut(s)	19, 377, 419
VspI	ATTAAT	1 cut(s)	479
XapI	RAATTY	2 cut(s)	223, 462
XmnI	GAANNNNTTC	1 cut(s)	121
XspI	CTAG	2 cut(s)	351, 510
ZrmI	AGTACT	1 cut(s)	263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.