Prupe.5G064200_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
Physical Location & Seq
Forward (+)
7814368 .. 7817857
3490 bp
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UTR
Exon/CDS
Intron
Prupe.5G064200.1

Sequence Viewer

Length: 453 bp
ATGTTACTTATATTTTCTTCCTCCACTTTACTGGCACTCTTTTCTGCTTCAGAAATCCAAATCGAGAGTAACCACTCAGGAACACCCAGTGTAAAGACTGGTCAGACCCAAAAACCTTGCTTTCTCATTCCGCACCACACCTGTTACCTTGTAACTGAAGGAGAGGTTATACACCATTCACCATTAGAGAAAGCACCAGCAAGCCCAAGGCTTATAATTCATGGTCGCCAACTCTTGAAGCATTGTTCTCAACTGCGTCTGTTCTTCTTGCGGGAAACCTTGCTGATCCAAAATCAAAATAGATCTAGAAAGTTGGGACAAAGTGAAATTGTAACCTCCACCATCGACAATTTGGGAGGTGTTGCAATCAGATTTGGTATCATAATGTGGAAAATTGATCTAGAAAGTTGGGACAAAGTATTGCTGGTTTGGCTTTACCTTTGTGATGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

151

Amino Acids

16.93

Weight (kDa)

8.42

Isoelectric Point (pI)

40.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 215
AciI CCGC 2 cut(s) 131, 271
AclWI GGATC 1 cut(s) 280
AcuI CTGAAG 2 cut(s) 33, 177
AdeI CACNNNGTG 1 cut(s) 89
AgsI TTSAA 1 cut(s) 238
AlwI GGATC 1 cut(s) 280
AsuHPI GGTGA 1 cut(s) 171
BccI CCATC 2 cut(s) 350, 440
BfaI CTAG 2 cut(s) 306, 401
BglII AGATCT 1 cut(s) 302
BmrI ACTGGG 1 cut(s) 81
BmuI ACTGGG 1 cut(s) 81
BsaJI CCNNGG 1 cut(s) 206
Bse1I ACTGG 3 cut(s) 36, 87, 103
BseDI CCNNGG 1 cut(s) 206
BseMII CTCAG 1 cut(s) 90
BseNI ACTGG 3 cut(s) 36, 87, 103
BslFI GGGAC 2 cut(s) 330, 425
BsmFI GGGAC 2 cut(s) 330, 425
Bsp143I GATC 3 cut(s) 285, 302, 397
BspACI CCGC 2 cut(s) 131, 271
BspCNI CTCAG 1 cut(s) 89
BspPI GGATC 1 cut(s) 280
BsrI ACTGG 3 cut(s) 36, 87, 103
BssECI CCNNGG 1 cut(s) 206
BssMI GATC 3 cut(s) 285, 302, 397
BssT1I CCWWGG 1 cut(s) 206
BstC8I GCNNGC 1 cut(s) 202
BstDEI CTNAG 1 cut(s) 76
BstKTI GATC 3 cut(s) 288, 305, 400
BstMBI GATC 3 cut(s) 285, 302, 397
BstMWI GCNNNNNNNGC 1 cut(s) 430
BstX2I RGATCY 1 cut(s) 302
BstXI CCANNNNNNTGG 1 cut(s) 31
BstYI RGATCY 1 cut(s) 302
BtsIMutI CAGTG 1 cut(s) 94
Cac8I GCNNGC 1 cut(s) 202
CseI GACGC 1 cut(s) 245
CviAII CATG 1 cut(s) 221
CviJI RGCY 3 cut(s) 204, 211, 433
CviKI_1 RGCY 3 cut(s) 204, 211, 433
DdeI CTNAG 1 cut(s) 76
DpnI GATC 3 cut(s) 287, 304, 399
DpnII GATC 3 cut(s) 285, 302, 397
DraIII CACNNNGTG 1 cut(s) 89
Eco130I CCWWGG 1 cut(s) 206
Eco57I CTGAAG 2 cut(s) 33, 177
EcoT14I CCWWGG 1 cut(s) 206
ErhI CCWWGG 1 cut(s) 206
FaeI CATG 1 cut(s) 224
FaiI YATR 5 cut(s) 11, 170, 215, 222, 383
FaqI GGGAC 2 cut(s) 330, 425
FatI CATG 1 cut(s) 220
FauI CCCGC 1 cut(s) 264
FspBI CTAG 2 cut(s) 306, 401
HgaI GACGC 1 cut(s) 245
Hin1II CATG 1 cut(s) 224
HphI GGTGA 1 cut(s) 171
Hpy188I TCNGA 3 cut(s) 52, 105, 371
Hpy188III TCNNGA 5 cut(s) 64, 78, 235, 306, 401
HpyAV CCTTC 1 cut(s) 152
HpyCH4V TGCA 1 cut(s) 365
HpyF10VI GCNNNNNNNGC 1 cut(s) 430
HpyF3I CTNAG 1 cut(s) 76
Hsp92II CATG 1 cut(s) 224
Kzo9I GATC 3 cut(s) 285, 302, 397
LpnPI CCDG 7 cut(s) 17, 63, 84, 100, 154, 210, 410
MaeI CTAG 2 cut(s) 306, 401
MaeIII GTNAC 5 cut(s) 3, 68, 143, 151, 331
MalI GATC 3 cut(s) 287, 304, 399
MboI GATC 3 cut(s) 285, 302, 397
MboII GAAGA 2 cut(s) 9, 256
MflI RGATCY 1 cut(s) 302
MluCI AATT 4 cut(s) 216, 327, 349, 393
MnlI CCTC 4 cut(s) 31, 157, 346, 350
MwoI GCNNNNNNNGC 1 cut(s) 430
NdeII GATC 3 cut(s) 285, 302, 397
NlaIII CATG 1 cut(s) 224
PsiI TTATAA 1 cut(s) 215
PsuI RGATCY 1 cut(s) 302
Sau3AI GATC 3 cut(s) 285, 302, 397
SetI ASST 8 cut(s) 118, 143, 150, 168, 281, 338, 361, 441
Sse9I AATT 4 cut(s) 216, 327, 349, 393
SsiI CCGC 2 cut(s) 131, 271
SspMI CTAG 2 cut(s) 306, 401
StyI CCWWGG 1 cut(s) 206
TaqI TCGA 2 cut(s) 63, 345
TasI AATT 4 cut(s) 216, 327, 349, 393
TscAI CASTG 1 cut(s) 94
TspDTI ATGAA 1 cut(s) 209
TspRI CASTG 1 cut(s) 94
XbaI TCTAGA 2 cut(s) 305, 400
XcmI CCANNNNNNNNNTGG 1 cut(s) 349
XspI CTAG 2 cut(s) 306, 401
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.