Prupe.6G163900_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0019799
Physical Location & Seq
Reverse (-)
15732248 .. 15737125
4878 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G163900.1

Sequence Viewer

Length: 345 bp
ATGGGTACAAGATTAAGGGAAGGAAAGGAAGAAAAGCTGAAGAACGTGGAGAAAAATTGCACGGGTTCAGAACCCACGAAGCTGACGGTTTCCACAATTTTAGAACCCATCACCACCATGTTACCTATATTTTTCTTCGTCCACTTCATTGGCACCTTTTCTGCTTCAGAAATCGAAATCGAAATTGCGAGTAATCACCCAAGAGCACCCGGTGTAAAGACTGGCCAGACTCGAAAAACTTCCTTTCTCATTCCGCACCACACCTGCTATCCTGTAACTGAAGATAAAGGAGGTAGGGTTCACACTCAGAAAGAGAGAAGATTTAAATTCGTACAGGGGGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

115

Amino Acids

12.83

Weight (kDa)

9.47

Isoelectric Point (pI)

42.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 272
Acc36I ACCTGC 1 cut(s) 272
AccB1I GGYRCC 1 cut(s) 152
AciI CCGC 1 cut(s) 254
AcoI YGGCCR 1 cut(s) 223
AcsI RAATTY 1 cut(s) 326
AcuI CTGAAG 3 cut(s) 59, 150, 300
AdeI CACNNNGTG 1 cut(s) 212
AfaI GTAC 2 cut(s) 7, 333
AloI GAACNNNNNNTCC 2 cut(s) 282, 314
AluBI AGCT 2 cut(s) 37, 82
AluI AGCT 2 cut(s) 37, 82
Alw21I GWGCWC 1 cut(s) 208
AoxI GGCC 1 cut(s) 223
ApoI RAATTY 1 cut(s) 326
Asp700I GAANNNNTTC 1 cut(s) 238
AsuC2I CCSGG 1 cut(s) 210
AsuHPI GGTGA 2 cut(s) 103, 188
BalI TGGCCA 1 cut(s) 225
BanI GGYRCC 1 cut(s) 152
Bbv12I GWGCWC 1 cut(s) 208
BccI CCATC 1 cut(s) 116
BcnI CCSGG 1 cut(s) 210
BfuAI ACCTGC 1 cut(s) 272
Bme1390I CCNGG 1 cut(s) 210
BmiI GGNNCC 1 cut(s) 154
BmrFI CCNGG 1 cut(s) 210
BpuMI CCSGG 1 cut(s) 210
BsaXI ACNNNNNCTCC 2 cut(s) 282, 312
Bse1I ACTGG 1 cut(s) 226
BseMII CTCAG 1 cut(s) 320
BseNI ACTGG 1 cut(s) 226
BshFI GGCC 1 cut(s) 225
BshNI GGYRCC 1 cut(s) 152
BsiHKAI GWGCWC 1 cut(s) 208
BsiSI CCGG 1 cut(s) 210
BsnI GGCC 1 cut(s) 225
Bsp1286I GDGCHC 1 cut(s) 208
BspACI CCGC 1 cut(s) 254
BspANI GGCC 1 cut(s) 225
BspCNI CTCAG 1 cut(s) 319
BspLI GGNNCC 1 cut(s) 154
BspMI ACCTGC 1 cut(s) 272
BspT107I GGYRCC 1 cut(s) 152
BsrI ACTGG 1 cut(s) 226
Bst4CI ACNGT 1 cut(s) 88
BstDEI CTNAG 1 cut(s) 306
BstSCI CCNGG 1 cut(s) 208
BstXI CCANNNNNNTGG 1 cut(s) 149
BsuRI GGCC 1 cut(s) 225
BveI ACCTGC 1 cut(s) 272
Csp6I GTAC 2 cut(s) 6, 332
CviAII CATG 1 cut(s) 118
CviJI RGCY 3 cut(s) 37, 82, 225
CviKI_1 RGCY 3 cut(s) 37, 82, 225
CviQI GTAC 2 cut(s) 6, 332
DdeI CTNAG 1 cut(s) 306
DraI TTTAAA 1 cut(s) 325
DraIII CACNNNGTG 1 cut(s) 212
EaeI YGGCCR 1 cut(s) 223
Eco57I CTGAAG 3 cut(s) 59, 150, 300
FaeI CATG 1 cut(s) 121
FaiI YATR 2 cut(s) 119, 128
FatI CATG 1 cut(s) 117
HaeIII GGCC 1 cut(s) 225
HapII CCGG 1 cut(s) 210
Hin1II CATG 1 cut(s) 121
HinfI GANTC 1 cut(s) 229
HpaII CCGG 1 cut(s) 210
HphI GGTGA 2 cut(s) 103, 188
Hpy166II GTNNAC 2 cut(s) 142, 301
Hpy188I TCNGA 3 cut(s) 70, 169, 309
Hpy8I GTNNAC 2 cut(s) 142, 301
HpyAV CCTTC 1 cut(s) 14
HpyCH4III ACNGT 1 cut(s) 88
HpyCH4IV ACGT 1 cut(s) 45
HpyCH4V TGCA 1 cut(s) 60
HpyF3I CTNAG 1 cut(s) 306
HpySE526I ACGT 1 cut(s) 45
Hsp92II CATG 1 cut(s) 121
LpnPI CCDG 6 cut(s) 207, 223, 239, 277, 285, 320
MaeII ACGT 1 cut(s) 45
MaeIII GTNAC 2 cut(s) 120, 274
MboII GAAGA 5 cut(s) 41, 52, 127, 293, 330
MhlI GDGCHC 1 cut(s) 208
MlsI TGGCCA 1 cut(s) 225
MluCI AATT 4 cut(s) 55, 96, 183, 326
MluNI TGGCCA 1 cut(s) 225
MlyI GAGTC 1 cut(s) 223
MnlI CCTC 1 cut(s) 284
Mox20I TGGCCA 1 cut(s) 225
MroXI GAANNNNTTC 1 cut(s) 238
MscI TGGCCA 1 cut(s) 225
MseI TTAA 2 cut(s) 14, 324
MslI CAYNNNNRTG 1 cut(s) 116
Msp20I TGGCCA 1 cut(s) 225
MspI CCGG 1 cut(s) 210
MspR9I CCNGG 1 cut(s) 210
NciI CCSGG 1 cut(s) 210
NlaIII CATG 1 cut(s) 121
NlaIV GGNNCC 1 cut(s) 154
PaqCI CACCTGC 1 cut(s) 272
PdmI GAANNNNTTC 1 cut(s) 238
PleI GAGTC 1 cut(s) 223
PpsI GAGTC 1 cut(s) 223
PspN4I GGNNCC 1 cut(s) 154
RsaI GTAC 2 cut(s) 7, 333
RsaNI GTAC 2 cut(s) 6, 332
RseI CAYNNNNRTG 1 cut(s) 116
SaqAI TTAA 2 cut(s) 14, 324
SchI GAGTC 1 cut(s) 223
ScrFI CCNGG 1 cut(s) 210
SduI GDGCHC 1 cut(s) 208
SetI ASST 7 cut(s) 39, 48, 84, 127, 158, 266, 295
SmiI ATTTAAAT 1 cut(s) 325
SmiMI CAYNNNNRTG 1 cut(s) 116
Sse9I AATT 4 cut(s) 55, 96, 183, 326
SsiI CCGC 1 cut(s) 254
StyD4I CCNGG 1 cut(s) 208
SwaI ATTTAAAT 1 cut(s) 325
TaaI ACNGT 1 cut(s) 88
TaiI ACGT 1 cut(s) 48
TaqI TCGA 3 cut(s) 174, 180, 232
TasI AATT 4 cut(s) 55, 96, 183, 326
Tru1I TTAA 2 cut(s) 14, 324
Tru9I TTAA 2 cut(s) 14, 324
TspDTI ATGAA 1 cut(s) 136
XapI RAATTY 1 cut(s) 326
XmnI GAANNNNTTC 1 cut(s) 238
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.