Rh4CG194500
MADS Family

MADS-box transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0019799
Physical Location & Seq
Reverse (-)
41583526 .. 41586931
3406 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG194500.1

Sequence Viewer

Length: 369 bp
ATGAGCTCGCTATGTCAAATTAATATGCCAAGCCCAAACCTCAAGTTGAGAATTCAATTGGGTCTGGGATCAGCTGGACAAGTTTCCAGGACCATGATCAAGGAGGAGGGTTTTGGTTCATTGTATAAGGACCTGAGTAACCAACCTAGGTTATTGCAAACCCAACTTTCCGAAATAAAGAAGAGATTAAGCTGTTGGACGAACCCTGATATGATCAACAATGTAGATCAGTTGGGGCAAATGGAAGATTCAATTCGAGAATCGCGTAACCAGATTCGAACACATAAGTATTTGGACGAGAACAAGTCATTGATTCTGAAGATTGTTGAGAGCCAGAATTCAGGGAAATTGAGTGAATGTGCAGAGTGA

Protein Analysis

122

Amino Acids

13.84

Weight (kDa)

8.49

Isoelectric Point (pI)

51.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SSXT PF05030 93 - 121 2.1e-06 SSXT protein (N-terminal region)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 265
AclWI GGATC 1 cut(s) 76
AcsI RAATTY 2 cut(s) 51, 337
AcuI CTGAAG 1 cut(s) 338
AgsI TTSAA 2 cut(s) 56, 252
AjnI CCWGG 1 cut(s) 86
AluBI AGCT 3 cut(s) 6, 74, 192
AluI AGCT 3 cut(s) 6, 74, 192
Alw21I GWGCWC 1 cut(s) 8
AlwI GGATC 1 cut(s) 76
ApoI RAATTY 2 cut(s) 51, 337
AseI ATTAAT 1 cut(s) 21
AspA2I CCTAGG 1 cut(s) 146
AspS9I GGNCC 2 cut(s) 90, 130
AsuII TTCGAA 1 cut(s) 277
AvaII GGWCC 2 cut(s) 90, 130
AvrII CCTAGG 1 cut(s) 146
BanII GRGCYC 1 cut(s) 8
Bbv12I GWGCWC 1 cut(s) 8
BciT130I CCWGG 1 cut(s) 88
BclI TGATCA 2 cut(s) 96, 213
BfaI CTAG 1 cut(s) 147
BlnI CCTAGG 1 cut(s) 146
Bme1390I CCNGG 1 cut(s) 88
Bme18I GGWCC 2 cut(s) 90, 130
BmgT120I GGNCC 2 cut(s) 90, 130
BmrFI CCNGG 1 cut(s) 88
Bpu14I TTCGAA 1 cut(s) 277
BpuEI CTTGAG 1 cut(s) 26
BsaJI CCNNGG 1 cut(s) 146
BseBI CCWGG 1 cut(s) 88
BseDI CCNNGG 1 cut(s) 146
BseMII CTCAG 1 cut(s) 125
BseRI GAGGAG 1 cut(s) 119
Bsh1236I CGCG 1 cut(s) 265
BsiHKAI GWGCWC 1 cut(s) 8
Bsp119I TTCGAA 1 cut(s) 277
Bsp1286I GDGCHC 1 cut(s) 8
Bsp143I GATC 4 cut(s) 68, 96, 213, 226
BspCNI CTCAG 1 cut(s) 126
BspFNI CGCG 1 cut(s) 265
BspPI GGATC 1 cut(s) 76
BspT104I TTCGAA 1 cut(s) 277
BssECI CCNNGG 1 cut(s) 146
BssMI GATC 4 cut(s) 68, 96, 213, 226
BssT1I CCWWGG 1 cut(s) 146
Bst2UI CCWGG 1 cut(s) 88
Bst6I CTCTTC 1 cut(s) 176
BstBI TTCGAA 1 cut(s) 277
BstC8I GCNNGC 1 cut(s) 8
BstDEI CTNAG 1 cut(s) 134
BstFNI CGCG 1 cut(s) 265
BstKTI GATC 4 cut(s) 71, 99, 216, 229
BstMBI GATC 4 cut(s) 68, 96, 213, 226
BstNI CCWGG 1 cut(s) 88
BstSCI CCNGG 1 cut(s) 86
BstUI CGCG 1 cut(s) 265
Cac8I GCNNGC 1 cut(s) 8
Cfr13I GGNCC 2 cut(s) 90, 130
CviAII CATG 1 cut(s) 94
CviJI RGCY 5 cut(s) 6, 33, 74, 192, 333
CviKI_1 RGCY 5 cut(s) 6, 33, 74, 192, 333
DdeI CTNAG 1 cut(s) 134
DpnI GATC 4 cut(s) 70, 98, 215, 228
DpnII GATC 4 cut(s) 68, 96, 213, 226
Eam1104I CTCTTC 1 cut(s) 176
EarI CTCTTC 1 cut(s) 176
Ecl136II GAGCTC 1 cut(s) 6
Eco130I CCWWGG 1 cut(s) 146
Eco24I GRGCYC 1 cut(s) 8
Eco47I GGWCC 2 cut(s) 90, 130
Eco53kI GAGCTC 1 cut(s) 6
Eco57I CTGAAG 1 cut(s) 338
EcoICRI GAGCTC 1 cut(s) 6
EcoO109I RGGNCCY 1 cut(s) 130
EcoRI GAATTC 2 cut(s) 51, 337
EcoRII CCWGG 1 cut(s) 86
EcoT14I CCWWGG 1 cut(s) 146
EcoT38I GRGCYC 1 cut(s) 8
ErhI CCWWGG 1 cut(s) 146
FaeI CATG 1 cut(s) 97
FaiI YATR 6 cut(s) 13, 26, 95, 126, 212, 285
FatI CATG 1 cut(s) 93
FbaI TGATCA 2 cut(s) 96, 213
FriOI GRGCYC 1 cut(s) 8
FspBI CTAG 1 cut(s) 147
Hin1II CATG 1 cut(s) 97
HinfI GANTC 4 cut(s) 248, 260, 274, 313
Hpy188I TCNGA 2 cut(s) 172, 318
Hpy188III TCNNGA 1 cut(s) 257
HpyCH4V TGCA 2 cut(s) 157, 362
HpyF3I CTNAG 1 cut(s) 134
Hsp92II CATG 1 cut(s) 97
Ksp22I TGATCA 2 cut(s) 96, 213
Kzo9I GATC 4 cut(s) 68, 96, 213, 226
LpnPI CCDG 9 cut(s) 50, 60, 73, 100, 146, 219, 284, 327, 347
MaeI CTAG 1 cut(s) 147
MaeIII GTNAC 2 cut(s) 137, 266
MalI GATC 4 cut(s) 70, 98, 215, 228
MboI GATC 4 cut(s) 68, 96, 213, 226
MboII GAAGA 3 cut(s) 193, 257, 331
MfeI CAATTG 1 cut(s) 56
MhlI GDGCHC 1 cut(s) 8
MluCI AATT 6 cut(s) 18, 51, 56, 252, 337, 347
MmeI TCCRAC 1 cut(s) 176
MnlI CCTC 3 cut(s) 50, 97, 100
MseI TTAA 2 cut(s) 21, 188
MspA1I CMGCKG 1 cut(s) 74
MspR9I CCNGG 1 cut(s) 88
MunI CAATTG 1 cut(s) 56
MvaI CCWGG 1 cut(s) 88
MvnI CGCG 1 cut(s) 265
NdeII GATC 4 cut(s) 68, 96, 213, 226
NlaIII CATG 1 cut(s) 97
NspV TTCGAA 1 cut(s) 277
PcsI WCGNNNNNNNCGW 1 cut(s) 262
PfeI GAWTC 4 cut(s) 248, 260, 274, 313
PfoI TCCNGGA 1 cut(s) 86
PpuMI RGGWCCY 1 cut(s) 130
PshBI ATTAAT 1 cut(s) 21
Psp124BI GAGCTC 1 cut(s) 8
Psp5II RGGWCCY 1 cut(s) 130
Psp6I CCWGG 1 cut(s) 86
PspGI CCWGG 1 cut(s) 86
PspPI GGNCC 2 cut(s) 90, 130
PspPPI RGGWCCY 1 cut(s) 130
PvuII CAGCTG 1 cut(s) 74
SacI GAGCTC 1 cut(s) 8
SaqAI TTAA 2 cut(s) 21, 188
Sau3AI GATC 4 cut(s) 68, 96, 213, 226
Sau96I GGNCC 2 cut(s) 90, 130
ScrFI CCNGG 1 cut(s) 88
SduI GDGCHC 1 cut(s) 8
SetI ASST 7 cut(s) 8, 42, 76, 135, 148, 152, 194
SfuI TTCGAA 1 cut(s) 277
SinI GGWCC 2 cut(s) 90, 130
SmlI CTYRAG 1 cut(s) 41
SmoI CTYRAG 1 cut(s) 41
Sse9I AATT 6 cut(s) 18, 51, 56, 252, 337, 347
SspMI CTAG 1 cut(s) 147
SstI GAGCTC 1 cut(s) 8
StyD4I CCNGG 1 cut(s) 86
StyI CCWWGG 1 cut(s) 146
TaqI TCGA 2 cut(s) 256, 277
TasI AATT 6 cut(s) 18, 51, 56, 252, 337, 347
TfiI GAWTC 4 cut(s) 248, 260, 274, 313
Tru1I TTAA 2 cut(s) 21, 188
Tru9I TTAA 2 cut(s) 21, 188
TspDTI ATGAA 1 cut(s) 108
VpaK11BI GGWCC 2 cut(s) 90, 130
VspI ATTAAT 1 cut(s) 21
XapI RAATTY 2 cut(s) 51, 337
XmaJI CCTAGG 1 cut(s) 146
XspI CTAG 1 cut(s) 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.