Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0019799

Physical Location & Seq

Genomic Coordinates Forward (+)

26562533 .. 26577970

Gene Structure 15438 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG140500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 186 bp

ATGCGGAACAATTTAACCAAGGGTGAACAAAATCAGTTGGGGCAAATGGAAGATTCAATTCGAGAATCGCGTAACCAGATTCGAACACATAAGTATTTGGAAGAGAACAAGTCATTGATTCTGAAGATTGTTGAGAGCCAGAATTCAGGGAAATTGAGTGAATGTGCAGAGTTATGGAGGTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003712 GO:0003713 GO:0007275 GO:0007389 GO:0008150 GO:0008283 GO:0009889 GO:0009891 GO:0009893 GO:0009955 GO:0010556 GO:0010557 GO:0010604 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0045935 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SSXT

Protein Analysis

61

Amino Acids

7.16

Weight (kDa)

7.91

Isoelectric Point (pI)

60.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SSXT	PF05030	26 - 57	1.3e-06	SSXT protein (N-terminal region)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0019799)

Species	Orthologous Gene IDs
prunus_persica	Prupe.1G184900_v2.0.a1 Prupe.1G184900_v2.0.a1 Prupe.5G064200_v2.0.a1 Prupe.6G045700_v2.0.a1 Prupe.6G163900_v2.0.a1
rosa_samantha	Rh1AG140500 Rh4CG194500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	70
AciI	CCGC	1 cut(s)	4
AcsI	RAATTY	1 cut(s)	142
AcuI	CTGAAG	1 cut(s)	143
AgsI	TTSAA	1 cut(s)	57
ApoI	RAATTY	1 cut(s)	142
AsuHPI	GGTGA	1 cut(s)	35
AsuII	TTCGAA	1 cut(s)	82
Bpu14I	TTCGAA	1 cut(s)	82
BsaJI	CCNNGG	1 cut(s)	18
BseDI	CCNNGG	1 cut(s)	18
BsgI	GTGCAG	1 cut(s)	186
Bsh1236I	CGCG	1 cut(s)	70
Bsp119I	TTCGAA	1 cut(s)	82
BspACI	CCGC	1 cut(s)	4
BspFNI	CGCG	1 cut(s)	70
BspHI	TCATGA	1 cut(s)	182
BspT104I	TTCGAA	1 cut(s)	82
BssECI	CCNNGG	1 cut(s)	18
BssT1I	CCWWGG	1 cut(s)	18
Bst6I	CTCTTC	1 cut(s)	96
BstBI	TTCGAA	1 cut(s)	82
BstFNI	CGCG	1 cut(s)	70
BstUI	CGCG	1 cut(s)	70
CciI	TCATGA	1 cut(s)	182
CviAII	CATG	1 cut(s)	183
CviJI	RGCY	1 cut(s)	138
CviKI_1	RGCY	1 cut(s)	138
Eam1104I	CTCTTC	1 cut(s)	96
EarI	CTCTTC	1 cut(s)	96
Eco130I	CCWWGG	1 cut(s)	18
Eco57I	CTGAAG	1 cut(s)	143
EcoRI	GAATTC	1 cut(s)	142
EcoT14I	CCWWGG	1 cut(s)	18
ErhI	CCWWGG	1 cut(s)	18
FaeI	CATG	1 cut(s)	186
FaiI	YATR	3 cut(s)	90, 175, 184
FatI	CATG	1 cut(s)	182
Hin1II	CATG	1 cut(s)	186
HinfI	GANTC	4 cut(s)	53, 65, 79, 118
HphI	GGTGA	1 cut(s)	35
Hpy166II	GTNNAC	1 cut(s)	26
Hpy188I	TCNGA	1 cut(s)	123
Hpy188III	TCNNGA	2 cut(s)	62, 183
Hpy8I	GTNNAC	1 cut(s)	26
HpyCH4V	TGCA	1 cut(s)	167
Hsp92II	CATG	1 cut(s)	186
LpnPI	CCDG	3 cut(s)	89, 132, 152
MaeIII	GTNAC	1 cut(s)	71
MboII	GAAGA	3 cut(s)	62, 113, 136
MluCI	AATT	4 cut(s)	10, 57, 142, 152
MnlI	CCTC	1 cut(s)	171
MseI	TTAA	1 cut(s)	14
MvnI	CGCG	1 cut(s)	70
NlaIII	CATG	1 cut(s)	186
NspV	TTCGAA	1 cut(s)	82
PagI	TCATGA	1 cut(s)	182
PcsI	WCGNNNNNNNCGW	1 cut(s)	67
PfeI	GAWTC	4 cut(s)	53, 65, 79, 118
SaqAI	TTAA	1 cut(s)	14
SetI	ASST	1 cut(s)	182
SfuI	TTCGAA	1 cut(s)	82
SgeI	CNNG	7 cut(s)	31, 74, 81, 88, 121, 151, 159
Sse9I	AATT	4 cut(s)	10, 57, 142, 152
SsiI	CCGC	1 cut(s)	4
StyI	CCWWGG	1 cut(s)	18
TaqI	TCGA	2 cut(s)	61, 82
TasI	AATT	4 cut(s)	10, 57, 142, 152
TfiI	GAWTC	4 cut(s)	53, 65, 79, 118
Tru1I	TTAA	1 cut(s)	14
Tru9I	TTAA	1 cut(s)	14
XapI	RAATTY	1 cut(s)	142

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.