Prupe.6G045700_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Reverse (-)
3307810 .. 3308333
524 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G045700.1

Sequence Viewer

Length: 228 bp
ATGTTACCTATATTTTTCTTCGTCCACTTCATTGGCACCTTTTCTGCTTCAGAAATCGAAACCGAAATTGCGAGTAATCACCCAAGAGCACCCGGTGTAAAGACTGGCCAGACTCGAAAAACTTCCTTTCTCATTCCGCACCACACCTGCTATCCTGTAACTGAAGATAAAGGAGGTAGGGTTCACACTCAGAAAGAGAGAAGATTTAAATTCGTACAGGAGGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

76

Amino Acids

8.57

Weight (kDa)

9.43

Isoelectric Point (pI)

39.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 155
Acc36I ACCTGC 1 cut(s) 155
AccB1I GGYRCC 1 cut(s) 35
AciI CCGC 1 cut(s) 137
AcoI YGGCCR 1 cut(s) 106
AcsI RAATTY 1 cut(s) 209
AcuI CTGAAG 2 cut(s) 33, 183
AdeI CACNNNGTG 1 cut(s) 95
AfaI GTAC 1 cut(s) 216
AloI GAACNNNNNNTCC 2 cut(s) 165, 197
Alw21I GWGCWC 1 cut(s) 91
AoxI GGCC 1 cut(s) 106
ApoI RAATTY 1 cut(s) 209
Asp700I GAANNNNTTC 1 cut(s) 121
AsuC2I CCSGG 1 cut(s) 93
AsuHPI GGTGA 1 cut(s) 71
BalI TGGCCA 1 cut(s) 108
BanI GGYRCC 1 cut(s) 35
Bbv12I GWGCWC 1 cut(s) 91
BcnI CCSGG 1 cut(s) 93
BfuAI ACCTGC 1 cut(s) 155
Bme1390I CCNGG 1 cut(s) 93
BmiI GGNNCC 1 cut(s) 37
BmrFI CCNGG 1 cut(s) 93
BpuMI CCSGG 1 cut(s) 93
BsaXI ACNNNNNCTCC 2 cut(s) 165, 195
Bse1I ACTGG 1 cut(s) 109
BseMII CTCAG 1 cut(s) 203
BseNI ACTGG 1 cut(s) 109
BshFI GGCC 1 cut(s) 108
BshNI GGYRCC 1 cut(s) 35
BsiHKAI GWGCWC 1 cut(s) 91
BsiSI CCGG 1 cut(s) 93
BsnI GGCC 1 cut(s) 108
Bsp1286I GDGCHC 1 cut(s) 91
BspACI CCGC 1 cut(s) 137
BspANI GGCC 1 cut(s) 108
BspCNI CTCAG 1 cut(s) 202
BspLI GGNNCC 1 cut(s) 37
BspMI ACCTGC 1 cut(s) 155
BspT107I GGYRCC 1 cut(s) 35
BsrI ACTGG 1 cut(s) 109
BstDEI CTNAG 1 cut(s) 189
BstSCI CCNGG 1 cut(s) 91
BstXI CCANNNNNNTGG 1 cut(s) 32
BsuRI GGCC 1 cut(s) 108
BveI ACCTGC 1 cut(s) 155
Csp6I GTAC 1 cut(s) 215
CviJI RGCY 1 cut(s) 108
CviKI_1 RGCY 1 cut(s) 108
CviQI GTAC 1 cut(s) 215
DdeI CTNAG 1 cut(s) 189
DraI TTTAAA 1 cut(s) 208
DraIII CACNNNGTG 1 cut(s) 95
EaeI YGGCCR 1 cut(s) 106
Eco57I CTGAAG 2 cut(s) 33, 183
FaiI YATR 1 cut(s) 11
HaeIII GGCC 1 cut(s) 108
HapII CCGG 1 cut(s) 93
HinfI GANTC 1 cut(s) 112
HpaII CCGG 1 cut(s) 93
HphI GGTGA 1 cut(s) 71
Hpy166II GTNNAC 2 cut(s) 25, 184
Hpy188I TCNGA 2 cut(s) 52, 192
Hpy8I GTNNAC 2 cut(s) 25, 184
HpyF3I CTNAG 1 cut(s) 189
LpnPI CCDG 6 cut(s) 90, 106, 122, 160, 168, 203
MaeIII GTNAC 2 cut(s) 3, 157
MboII GAAGA 3 cut(s) 10, 176, 213
MhlI GDGCHC 1 cut(s) 91
MlsI TGGCCA 1 cut(s) 108
MluCI AATT 2 cut(s) 66, 209
MluNI TGGCCA 1 cut(s) 108
MlyI GAGTC 1 cut(s) 106
MnlI CCTC 2 cut(s) 167, 214
Mox20I TGGCCA 1 cut(s) 108
MroXI GAANNNNTTC 1 cut(s) 121
MscI TGGCCA 1 cut(s) 108
MseI TTAA 1 cut(s) 207
Msp20I TGGCCA 1 cut(s) 108
MspI CCGG 1 cut(s) 93
MspR9I CCNGG 1 cut(s) 93
NciI CCSGG 1 cut(s) 93
NlaIV GGNNCC 1 cut(s) 37
PaqCI CACCTGC 1 cut(s) 155
PdmI GAANNNNTTC 1 cut(s) 121
PleI GAGTC 1 cut(s) 106
PpsI GAGTC 1 cut(s) 106
PspN4I GGNNCC 1 cut(s) 37
RsaI GTAC 1 cut(s) 216
RsaNI GTAC 1 cut(s) 215
SaqAI TTAA 1 cut(s) 207
SchI GAGTC 1 cut(s) 106
ScrFI CCNGG 1 cut(s) 93
SduI GDGCHC 1 cut(s) 91
SetI ASST 4 cut(s) 10, 41, 149, 178
SgeI CNNG 9 cut(s) 84, 96, 104, 105, 117, 121, 126, 159, 167
SmiI ATTTAAAT 1 cut(s) 208
Sse9I AATT 2 cut(s) 66, 209
SsiI CCGC 1 cut(s) 137
StyD4I CCNGG 1 cut(s) 91
SwaI ATTTAAAT 1 cut(s) 208
TaqI TCGA 2 cut(s) 57, 115
TasI AATT 2 cut(s) 66, 209
Tru1I TTAA 1 cut(s) 207
Tru9I TTAA 1 cut(s) 207
TspDTI ATGAA 1 cut(s) 19
XapI RAATTY 1 cut(s) 209
XmnI GAANNNNTTC 1 cut(s) 121
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.