Prupe.1G192700_v2.0.a1

Ribosomal L18p L5e family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0019643
Physical Location & Seq
Reverse (-)
18034013 .. 18034339
327 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G192700.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 327 bp
ATGTCGACGAACCACCATGTCCTCCGCCTCGTCCTCTCCTGCCGCAAAATCATAGCGCAGGTGACGAGCCCCAACAGCTGCTCAATCATAGCCATGGCCCCCTCCTTCGAGCAAGAGTTCGTTGCCCAGTACCGGGCCAAGTTAAACTGCTTCCCTCGCTCCCAAATCTTCTGGGACGCCAAGGTCGCCTCTCTTGTCGATGAGAAGCTCGGCCTTTGTCTCTGGGAGATCGGCGTCATCGGCGTAGAGATCGACGTCAGCGAAGAGCTCTCGAGGCCCGTCCACCACCGCATCAGGGTCTTGCCGCTCTTTGATTCCATTAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

109

Amino Acids

12.25

Weight (kDa)

7.73

Isoelectric Point (pI)

52.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019643)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G43310
fragaria_vesca FvH4_4g10741
malus_domestica MD04G1040200.v1.1 MD07G1010900.v1.1 MD07G1093600.v1.1 MD08G1180100.v1.1
prunus_persica Prupe.1G192700_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 49
AasI GACNNNNNNGTC 1 cut(s) 182
AatII GACGTC 1 cut(s) 258
Acc36I ACCTGC 1 cut(s) 49
AccBSI CCGCTC 1 cut(s) 307
AccI GTMKAC 1 cut(s) 5
AciI CCGC 4 cut(s) 25, 43, 289, 305
AcyI GRCGYC 3 cut(s) 177, 234, 255
AfaI GTAC 1 cut(s) 131
AfiI CCNNNNNNNGG 3 cut(s) 132, 133, 295
AluBI AGCT 3 cut(s) 78, 208, 268
AluI AGCT 3 cut(s) 78, 208, 268
Alw21I GWGCWC 1 cut(s) 270
Alw26I GTCTC 1 cut(s) 224
Ama87I CYCGRG 1 cut(s) 271
AoxI GGCC 4 cut(s) 96, 135, 211, 275
ApeKI GCWGC 1 cut(s) 78
AspLEI GCGC 1 cut(s) 58
AspS9I GGNCC 3 cut(s) 97, 135, 276
AsuC2I CCSGG 1 cut(s) 134
AsuHPI GGTGA 1 cut(s) 73
AvaI CYCGRG 1 cut(s) 271
BanII GRGCYC 2 cut(s) 71, 270
Bbv12I GWGCWC 1 cut(s) 270
BbvI GCAGC 1 cut(s) 65
BcnI CCSGG 1 cut(s) 134
BcoDI GTCTC 1 cut(s) 224
BfuAI ACCTGC 1 cut(s) 49
BisI GCNGC 3 cut(s) 43, 79, 305
BlsI GCNGC 3 cut(s) 44, 80, 306
Bme1390I CCNGG 1 cut(s) 134
BmeT110I CYCGRG 1 cut(s) 271
BmgT120I GGNCC 3 cut(s) 97, 135, 276
BmiI GGNNCC 1 cut(s) 99
BmrFI CCNGG 1 cut(s) 134
BmrI ACTGGG 1 cut(s) 121
BmsI GCATC 1 cut(s) 300
BmuI ACTGGG 1 cut(s) 121
BpuMI CCSGG 1 cut(s) 134
BsaHI GRCGYC 3 cut(s) 177, 234, 255
BsaJI CCNNGG 2 cut(s) 93, 180
Bsc4I CCNNNNNNNGG 3 cut(s) 132, 133, 295
Bse1I ACTGG 1 cut(s) 127
BseDI CCNNGG 2 cut(s) 93, 180
BseLI CCNNNNNNNGG 3 cut(s) 132, 133, 295
BseNI ACTGG 1 cut(s) 127
BseXI GCAGC 1 cut(s) 65
BshFI GGCC 4 cut(s) 98, 137, 213, 277
BsiHKAI GWGCWC 1 cut(s) 270
BsiHKCI CYCGRG 1 cut(s) 271
BsiSI CCGG 1 cut(s) 133
BslFI GGGAC 1 cut(s) 188
BslI CCNNNNNNNGG 3 cut(s) 132, 133, 295
BsmAI GTCTC 1 cut(s) 224
BsmFI GGGAC 1 cut(s) 188
BsnI GGCC 4 cut(s) 98, 137, 213, 277
BsoBI CYCGRG 1 cut(s) 271
Bsp1286I GDGCHC 2 cut(s) 71, 270
Bsp143I GATC 2 cut(s) 228, 249
Bsp19I CCATGG 1 cut(s) 93
BspACI CCGC 4 cut(s) 25, 43, 289, 305
BspANI GGCC 4 cut(s) 98, 137, 213, 277
BspLI GGNNCC 1 cut(s) 99
BspMI ACCTGC 1 cut(s) 49
BspQI GCTCTTC 1 cut(s) 258
BsrBI CCGCTC 1 cut(s) 307
BsrI ACTGG 1 cut(s) 127
BssECI CCNNGG 2 cut(s) 93, 180
BssMI GATC 2 cut(s) 228, 249
BssNI GRCGYC 3 cut(s) 177, 234, 255
BssT1I CCWWGG 2 cut(s) 93, 180
Bst6I CTCTTC 1 cut(s) 258
BstACI GRCGYC 3 cut(s) 177, 234, 255
BstDSI CCRYGG 1 cut(s) 93
BstHHI GCGC 1 cut(s) 58
BstKTI GATC 2 cut(s) 231, 252
BstMAI GTCTC 1 cut(s) 224
BstMBI GATC 2 cut(s) 228, 249
BstMWI GCNNNNNNNGC 5 cut(s) 75, 156, 185, 240, 274
BstSCI CCNGG 1 cut(s) 132
BstV1I GCAGC 1 cut(s) 65
BsuRI GGCC 4 cut(s) 98, 137, 213, 277
BtgI CCRYGG 1 cut(s) 93
BveI ACCTGC 1 cut(s) 49
CfoI GCGC 1 cut(s) 58
Cfr13I GGNCC 3 cut(s) 97, 135, 276
CseI GACGC 2 cut(s) 185, 223
Csp6I GTAC 1 cut(s) 130
CviAII CATG 2 cut(s) 17, 94
CviJI RGCY 9 cut(s) 69, 78, 92, 98, 137, 208, 213, 268, 277
CviKI_1 RGCY 9 cut(s) 69, 78, 92, 98, 137, 208, 213, 268, 277
CviQI GTAC 1 cut(s) 130
DpnI GATC 2 cut(s) 230, 251
DpnII GATC 2 cut(s) 228, 249
DrdI GACNNNNNNGTC 1 cut(s) 182
DseDI GACNNNNNNGTC 1 cut(s) 182
Eam1104I CTCTTC 1 cut(s) 258
EarI CTCTTC 1 cut(s) 258
EciI GGCGGA 1 cut(s) 14
Ecl136II GAGCTC 1 cut(s) 268
Eco130I CCWWGG 2 cut(s) 93, 180
Eco24I GRGCYC 2 cut(s) 71, 270
Eco53kI GAGCTC 1 cut(s) 268
Eco88I CYCGRG 1 cut(s) 271
EcoICRI GAGCTC 1 cut(s) 268
EcoT14I CCWWGG 2 cut(s) 93, 180
EcoT38I GRGCYC 2 cut(s) 71, 270
ErhI CCWWGG 2 cut(s) 93, 180
FaeI CATG 2 cut(s) 20, 97
FaiI YATR 4 cut(s) 18, 53, 89, 95
FaqI GGGAC 1 cut(s) 188
FatI CATG 2 cut(s) 16, 93
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 3 cut(s) 43, 79, 305
FriOI GRGCYC 2 cut(s) 71, 270
Fsp4HI GCNGC 3 cut(s) 43, 79, 305
GlaI GCGC 1 cut(s) 57
GluI GCNGC 3 cut(s) 43, 79, 305
HaeIII GGCC 4 cut(s) 98, 137, 213, 277
HapII CCGG 1 cut(s) 133
HgaI GACGC 2 cut(s) 185, 223
HhaI GCGC 1 cut(s) 58
Hin1I GRCGYC 3 cut(s) 177, 234, 255
Hin1II CATG 2 cut(s) 20, 97
Hin6I GCGC 1 cut(s) 56
HinP1I GCGC 1 cut(s) 56
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HinfI GANTC 1 cut(s) 314
HpaII CCGG 1 cut(s) 133
HphI GGTGA 1 cut(s) 73
Hpy166II GTNNAC 2 cut(s) 6, 283
Hpy188III TCNNGA 1 cut(s) 271
Hpy8I GTNNAC 2 cut(s) 6, 283
Hpy99I CGWCG 2 cut(s) 10, 257
HpyAV CCTTC 1 cut(s) 115
HpyCH4IV ACGT 1 cut(s) 255
HpyF10VI GCNNNNNNNGC 5 cut(s) 75, 156, 185, 240, 274
HpySE526I ACGT 1 cut(s) 255
Hsp92I GRCGYC 3 cut(s) 177, 234, 255
Hsp92II CATG 2 cut(s) 20, 97
HspAI GCGC 1 cut(s) 56
Kzo9I GATC 2 cut(s) 228, 249
LguI GCTCTTC 1 cut(s) 258
LmnI GCTCC 1 cut(s) 164
LpnPI CCDG 7 cut(s) 44, 52, 140, 146, 157, 208, 280
Lsp1109I GCAGC 1 cut(s) 65
LweI GCATC 1 cut(s) 300
MaeII ACGT 1 cut(s) 255
MaeIII GTNAC 1 cut(s) 61
MalI GATC 2 cut(s) 230, 251
MbiI CCGCTC 1 cut(s) 307
MboI GATC 2 cut(s) 228, 249
MboII GAAGA 2 cut(s) 160, 275
MhlI GDGCHC 2 cut(s) 71, 270
MnlI CCTC 7 cut(s) 32, 38, 44, 112, 165, 199, 267
MseI TTAA 2 cut(s) 143, 321
MslI CAYNNNNRTG 1 cut(s) 92
MspA1I CMGCKG 1 cut(s) 78
MspI CCGG 1 cut(s) 133
MspR9I CCNGG 1 cut(s) 134
MwoI GCNNNNNNNGC 5 cut(s) 75, 156, 185, 240, 274
NciI CCSGG 1 cut(s) 134
NcoI CCATGG 1 cut(s) 93
NdeII GATC 2 cut(s) 228, 249
NlaIII CATG 2 cut(s) 20, 97
NlaIV GGNNCC 1 cut(s) 99
NmeAIII GCCGAG 1 cut(s) 189
NmuCI GTSAC 1 cut(s) 61
PaeR7I CTCGAG 1 cut(s) 271
PaqCI CACCTGC 1 cut(s) 49
PciSI GCTCTTC 1 cut(s) 258
PcsI WCGNNNNNNNCGW 1 cut(s) 258
PfeI GAWTC 1 cut(s) 314
PkrI GCNGC 3 cut(s) 44, 80, 306
Psp124BI GAGCTC 1 cut(s) 270
PspN4I GGNNCC 1 cut(s) 99
PspPI GGNCC 3 cut(s) 97, 135, 276
PvuII CAGCTG 1 cut(s) 78
RsaI GTAC 1 cut(s) 131
RsaNI GTAC 1 cut(s) 130
RseI CAYNNNNRTG 1 cut(s) 92
SacI GAGCTC 1 cut(s) 270
SalI GTCGAC 1 cut(s) 4
SapI GCTCTTC 1 cut(s) 258
SaqAI TTAA 2 cut(s) 143, 321
SatI GCNGC 3 cut(s) 43, 79, 305
Sau3AI GATC 2 cut(s) 228, 249
Sau96I GGNCC 3 cut(s) 97, 135, 276
ScrFI CCNGG 1 cut(s) 134
SduI GDGCHC 2 cut(s) 71, 270
SetI ASST 6 cut(s) 63, 80, 186, 210, 258, 270
SfaNI GCATC 1 cut(s) 300
Sfr274I CTCGAG 1 cut(s) 271
SlaI CTCGAG 1 cut(s) 271
SmiMI CAYNNNNRTG 1 cut(s) 92
SmlI CTYRAG 1 cut(s) 271
SmoI CTYRAG 1 cut(s) 271
SsiI CCGC 4 cut(s) 25, 43, 289, 305
SstI GAGCTC 1 cut(s) 270
StyD4I CCNGG 1 cut(s) 132
StyI CCWWGG 2 cut(s) 93, 180
TaiI ACGT 1 cut(s) 258
TaqI TCGA 5 cut(s) 5, 108, 198, 252, 272
TauI GCSGC 2 cut(s) 45, 307
TfiI GAWTC 1 cut(s) 314
Tru1I TTAA 2 cut(s) 143, 321
Tru9I TTAA 2 cut(s) 143, 321
TseFI GTSAC 1 cut(s) 61
TseI GCWGC 1 cut(s) 78
Tsp45I GTSAC 1 cut(s) 61
XhoI CTCGAG 1 cut(s) 271
XmiI GTMKAC 1 cut(s) 5
ZraI GACGTC 1 cut(s) 256
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.