Prupe.1G193100_v2.0.a1

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0018520
Physical Location & Seq
Reverse (-)
18073655 .. 18074728
1074 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G193100.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 207 bp
ATGAAATTATCACATGGTTCCAGTGAGGTGAAAGCTGCTGCCGACATTTTGAACATTAAGCAACAGGAATTGGACAGCCAGCGCAGGGAAGTGCATGCCCTTCTCCTTGCTAAGGGTATTTCTGCCGACAATGATGAGTGTGTGACAGAGGCAATAGTCAGATCATCTCCTAGGGCTTCTTTCGTTCTTTTTGGGCATTCTTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

69

Amino Acids

7.36

Weight (kDa)

6.25

Isoelectric Point (pI)

61.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 2 cut(s) 85, 112
AgsI TTSAA 1 cut(s) 52
AluBI AGCT 1 cut(s) 35
AluI AGCT 1 cut(s) 35
ApeKI GCWGC 2 cut(s) 35, 38
AspA2I CCTAGG 1 cut(s) 170
AspLEI GCGC 1 cut(s) 84
AsuHPI GGTGA 1 cut(s) 40
AvrII CCTAGG 1 cut(s) 170
BbvI GCAGC 2 cut(s) 22, 25
BfaI CTAG 1 cut(s) 171
BisI GCNGC 2 cut(s) 36, 39
BlnI CCTAGG 1 cut(s) 170
BlsI GCNGC 2 cut(s) 37, 40
BmiI GGNNCC 1 cut(s) 19
Bpu10I CCTNAGC 1 cut(s) 111
BsaJI CCNNGG 1 cut(s) 170
Bsc4I CCNNNNNNNGG 2 cut(s) 85, 112
Bse1I ACTGG 1 cut(s) 21
BseDI CCNNGG 1 cut(s) 170
BseLI CCNNNNNNNGG 2 cut(s) 85, 112
BseNI ACTGG 1 cut(s) 21
BseXI GCAGC 2 cut(s) 22, 25
BslI CCNNNNNNNGG 2 cut(s) 85, 112
BsmI GAATGC 1 cut(s) 196
Bsp143I GATC 1 cut(s) 161
BspLI GGNNCC 1 cut(s) 19
BsrI ACTGG 1 cut(s) 21
BssECI CCNNGG 1 cut(s) 170
BssMI GATC 1 cut(s) 161
BssT1I CCWWGG 1 cut(s) 170
BstC8I GCNNGC 2 cut(s) 80, 96
BstDEI CTNAG 1 cut(s) 111
BstENI CCTNNNNNAGG 1 cut(s) 110
BstHHI GCGC 1 cut(s) 84
BstKTI GATC 1 cut(s) 164
BstMBI GATC 1 cut(s) 161
BstNSI RCATGY 1 cut(s) 98
BstV1I GCAGC 2 cut(s) 22, 25
BtsIMutI CAGTG 1 cut(s) 28
Cac8I GCNNGC 2 cut(s) 80, 96
CfoI GCGC 1 cut(s) 84
CviAII CATG 2 cut(s) 14, 95
CviJI RGCY 3 cut(s) 35, 78, 176
CviKI_1 RGCY 3 cut(s) 35, 78, 176
DdeI CTNAG 1 cut(s) 111
DpnI GATC 1 cut(s) 163
DpnII GATC 1 cut(s) 161
Eco130I CCWWGG 1 cut(s) 170
EcoNI CCTNNNNNAGG 1 cut(s) 110
EcoT14I CCWWGG 1 cut(s) 170
ErhI CCWWGG 1 cut(s) 170
FaeI CATG 2 cut(s) 17, 98
FaiI YATR 3 cut(s) 15, 96, 205
FatI CATG 2 cut(s) 13, 94
Fnu4HI GCNGC 2 cut(s) 36, 39
Fsp4HI GCNGC 2 cut(s) 36, 39
FspBI CTAG 1 cut(s) 171
GlaI GCGC 1 cut(s) 83
GluI GCNGC 2 cut(s) 36, 39
HhaI GCGC 1 cut(s) 84
Hin1II CATG 2 cut(s) 17, 98
Hin6I GCGC 1 cut(s) 82
HinP1I GCGC 1 cut(s) 82
HphI GGTGA 1 cut(s) 40
Hpy188I TCNGA 1 cut(s) 161
HpyAV CCTTC 1 cut(s) 110
HpyCH4V TGCA 1 cut(s) 94
HpyF3I CTNAG 1 cut(s) 111
Hsp92II CATG 2 cut(s) 17, 98
HspAI GCGC 1 cut(s) 82
Kzo9I GATC 1 cut(s) 161
LpnPI CCDG 4 cut(s) 34, 50, 70, 92
Lsp1109I GCAGC 2 cut(s) 22, 25
MaeI CTAG 1 cut(s) 171
MaeIII GTNAC 1 cut(s) 142
MalI GATC 1 cut(s) 163
MboI GATC 1 cut(s) 161
MboII GAAGA 1 cut(s) 192
MluCI AATT 2 cut(s) 5, 68
MnlI CCTC 2 cut(s) 19, 142
MseI TTAA 1 cut(s) 57
Mva1269I GAATGC 1 cut(s) 196
NdeII GATC 1 cut(s) 161
NlaIII CATG 2 cut(s) 17, 98
NlaIV GGNNCC 1 cut(s) 19
NmuCI GTSAC 1 cut(s) 142
NspI RCATGY 1 cut(s) 98
PaeI GCATGC 1 cut(s) 98
PctI GAATGC 1 cut(s) 196
PkrI GCNGC 2 cut(s) 37, 40
PspN4I GGNNCC 1 cut(s) 19
SaqAI TTAA 1 cut(s) 57
SatI GCNGC 2 cut(s) 36, 39
Sau3AI GATC 1 cut(s) 161
SetI ASST 2 cut(s) 30, 37
SgeI CNNG 8 cut(s) 26, 33, 77, 91, 97, 107, 119, 183
SphI GCATGC 1 cut(s) 98
Sse9I AATT 2 cut(s) 5, 68
SspMI CTAG 1 cut(s) 171
StyI CCWWGG 1 cut(s) 170
TasI AATT 2 cut(s) 5, 68
Tru1I TTAA 1 cut(s) 57
Tru9I TTAA 1 cut(s) 57
TscAI CASTG 1 cut(s) 28
TseFI GTSAC 1 cut(s) 142
TseI GCWGC 2 cut(s) 35, 38
Tsp45I GTSAC 1 cut(s) 142
TspDTI ATGAA 2 cut(s) 17, 192
TspRI CASTG 1 cut(s) 28
XagI CCTNNNNNAGG 1 cut(s) 110
XceI RCATGY 1 cut(s) 98
XmaJI CCTAGG 1 cut(s) 170
XspI CTAG 1 cut(s) 171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.