Prupe.1G203500_v2.0.a1

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0018520
Physical Location & Seq
Reverse (-)
20258002 .. 20259307
1306 bp
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UTR
Exon/CDS
Intron
Prupe.1G203500.1_v2.0.a1.CDS.2

Sequence Viewer

Length: 423 bp
ATGAACCTAGCATGTGCTGTCTTTGGAGAGCGAGCCATTCATAGCATGAAATTATCACATGGTTCCAGTGAGGTGAAAGCTACTGCCGACATTTTGAACATTAAGCAACAGGAATTGGACAGCCAGCGCAGGGAAGTGCATGCCCTTCTCCTTGCTAAGGGTATTTCTGCCGACAATGCTGAGTGTGTGACAGAGGCAATAGTCAGATCATCTCCTAGGGCTTCTTTCGTTCTTTTTTGGGCATTCTTCATAGCTTCAAGGTTGTCTCCTCTTGGCTTGGTGATCGATTATCTTGGCACATGGTTCTGTTCCCTTGGAGACCATAGGCTGCATGGATCTTTAGCATGTGCAGTTTTATCTTGCTTTGACTGTAGTTTTTTTTTTCTTTTTCTTTTGGACACTTTAACGAACATGTCGTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

141

Amino Acids

15.45

Weight (kDa)

6.17

Isoelectric Point (pI)

45.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 343
AfiI CCNNNNNNNGG 2 cut(s) 130, 157
AflIII ACRYGT 1 cut(s) 411
AgsI TTSAA 2 cut(s) 97, 258
AluBI AGCT 2 cut(s) 80, 254
AluI AGCT 2 cut(s) 80, 254
Alw26I GTCTC 2 cut(s) 270, 312
AlwI GGATC 1 cut(s) 343
ApeKI GCWGC 1 cut(s) 328
AspA2I CCTAGG 1 cut(s) 215
AspLEI GCGC 1 cut(s) 129
AsuHPI GGTGA 2 cut(s) 85, 292
AvrII CCTAGG 1 cut(s) 215
BbvI GCAGC 1 cut(s) 315
BcoDI GTCTC 2 cut(s) 270, 312
BfaI CTAG 2 cut(s) 8, 216
BfmI CTRYAG 1 cut(s) 370
BisI GCNGC 1 cut(s) 329
BlnI CCTAGG 1 cut(s) 215
BlsI GCNGC 1 cut(s) 330
BmiI GGNNCC 1 cut(s) 64
Bpu10I CCTNAGC 1 cut(s) 156
Bsa29I ATCGAT 1 cut(s) 285
BsaI GGTCTC 1 cut(s) 312
BsaJI CCNNGG 2 cut(s) 215, 313
Bsc4I CCNNNNNNNGG 2 cut(s) 130, 157
Bse1I ACTGG 1 cut(s) 66
BseCI ATCGAT 1 cut(s) 285
BseDI CCNNGG 2 cut(s) 215, 313
BseLI CCNNNNNNNGG 2 cut(s) 130, 157
BseMII CTCAG 1 cut(s) 171
BseNI ACTGG 1 cut(s) 66
BseRI GAGGAG 1 cut(s) 258
BseXI GCAGC 1 cut(s) 315
BsgI GTGCAG 1 cut(s) 369
BshVI ATCGAT 1 cut(s) 285
BslI CCNNNNNNNGG 2 cut(s) 130, 157
BsmAI GTCTC 2 cut(s) 270, 312
BsmI GAATGC 1 cut(s) 242
Bso31I GGTCTC 1 cut(s) 312
Bsp143I GATC 3 cut(s) 206, 282, 335
BspCNI CTCAG 1 cut(s) 172
BspDI ATCGAT 1 cut(s) 285
BspLI GGNNCC 1 cut(s) 64
BspPI GGATC 1 cut(s) 343
BspTNI GGTCTC 1 cut(s) 312
BsrI ACTGG 1 cut(s) 66
BssECI CCNNGG 2 cut(s) 215, 313
BssMI GATC 3 cut(s) 206, 282, 335
BssT1I CCWWGG 2 cut(s) 215, 313
Bst4CI ACNGT 1 cut(s) 371
BstC8I GCNNGC 3 cut(s) 33, 125, 141
BstDEI CTNAG 2 cut(s) 156, 180
BstENI CCTNNNNNAGG 1 cut(s) 155
BstHHI GCGC 1 cut(s) 129
BstKTI GATC 3 cut(s) 209, 285, 338
BstMAI GTCTC 2 cut(s) 270, 312
BstMBI GATC 3 cut(s) 206, 282, 335
BstMWI GCNNNNNNNGC 1 cut(s) 176
BstNSI RCATGY 4 cut(s) 15, 143, 348, 415
BstSFI CTRYAG 1 cut(s) 370
BstV1I GCAGC 1 cut(s) 315
BstX2I RGATCY 1 cut(s) 335
BstYI RGATCY 1 cut(s) 335
Bsu15I ATCGAT 1 cut(s) 285
BsuTUI ATCGAT 1 cut(s) 285
BtsIMutI CAGTG 1 cut(s) 73
Cac8I GCNNGC 3 cut(s) 33, 125, 141
CfoI GCGC 1 cut(s) 129
ClaI ATCGAT 1 cut(s) 285
CviAII CATG 8 cut(s) 12, 46, 59, 140, 300, 332, 345, 412
CviJI RGCY 7 cut(s) 35, 80, 123, 221, 254, 276, 328
CviKI_1 RGCY 7 cut(s) 35, 80, 123, 221, 254, 276, 328
DdeI CTNAG 2 cut(s) 156, 180
DpnI GATC 3 cut(s) 208, 284, 337
DpnII GATC 3 cut(s) 206, 282, 335
Eco130I CCWWGG 2 cut(s) 215, 313
Eco31I GGTCTC 1 cut(s) 312
EcoNI CCTNNNNNAGG 1 cut(s) 155
EcoT14I CCWWGG 2 cut(s) 215, 313
ErhI CCWWGG 2 cut(s) 215, 313
FaeI CATG 8 cut(s) 15, 49, 62, 143, 303, 335, 348, 415
FatI CATG 8 cut(s) 11, 45, 58, 139, 299, 331, 344, 411
Fnu4HI GCNGC 1 cut(s) 329
Fsp4HI GCNGC 1 cut(s) 329
FspBI CTAG 2 cut(s) 8, 216
GlaI GCGC 1 cut(s) 128
GluI GCNGC 1 cut(s) 329
HhaI GCGC 1 cut(s) 129
Hin1II CATG 8 cut(s) 15, 49, 62, 143, 303, 335, 348, 415
Hin6I GCGC 1 cut(s) 127
HinP1I GCGC 1 cut(s) 127
HphI GGTGA 2 cut(s) 85, 292
Hpy188I TCNGA 1 cut(s) 206
HpyAV CCTTC 1 cut(s) 155
HpyCH4III ACNGT 1 cut(s) 371
HpyCH4V TGCA 3 cut(s) 139, 331, 350
HpyF10VI GCNNNNNNNGC 1 cut(s) 176
HpyF3I CTNAG 2 cut(s) 156, 180
Hsp92II CATG 8 cut(s) 15, 49, 62, 143, 303, 335, 348, 415
HspAI GCGC 1 cut(s) 127
Kzo9I GATC 3 cut(s) 206, 282, 335
LpnPI CCDG 4 cut(s) 79, 95, 115, 137
Lsp1109I GCAGC 1 cut(s) 315
MaeI CTAG 2 cut(s) 8, 216
MaeIII GTNAC 1 cut(s) 187
MalI GATC 3 cut(s) 208, 284, 337
MboI GATC 3 cut(s) 206, 282, 335
MboII GAAGA 1 cut(s) 238
MflI RGATCY 1 cut(s) 335
MluCI AATT 2 cut(s) 50, 113
MnlI CCTC 3 cut(s) 64, 187, 279
MseI TTAA 3 cut(s) 102, 404, 421
Mva1269I GAATGC 1 cut(s) 242
MwoI GCNNNNNNNGC 1 cut(s) 176
NdeII GATC 3 cut(s) 206, 282, 335
NlaIII CATG 8 cut(s) 15, 49, 62, 143, 303, 335, 348, 415
NlaIV GGNNCC 1 cut(s) 64
NmuCI GTSAC 1 cut(s) 187
NspI RCATGY 4 cut(s) 15, 143, 348, 415
PaeI GCATGC 1 cut(s) 143
PciI ACATGT 1 cut(s) 411
PcsI WCGNNNNNNNCGW 1 cut(s) 413
PctI GAATGC 1 cut(s) 242
PkrI GCNGC 1 cut(s) 330
PscI ACATGT 1 cut(s) 411
PspN4I GGNNCC 1 cut(s) 64
PsuI RGATCY 1 cut(s) 335
SaqAI TTAA 3 cut(s) 102, 404, 421
SatI GCNGC 1 cut(s) 329
Sau3AI GATC 3 cut(s) 206, 282, 335
SetI ASST 5 cut(s) 9, 75, 82, 256, 263
SfcI CTRYAG 1 cut(s) 370
SphI GCATGC 1 cut(s) 143
Sse9I AATT 2 cut(s) 50, 113
SspMI CTAG 2 cut(s) 8, 216
StyI CCWWGG 2 cut(s) 215, 313
TaaI ACNGT 1 cut(s) 371
TaqI TCGA 1 cut(s) 285
TasI AATT 2 cut(s) 50, 113
Tru1I TTAA 3 cut(s) 102, 404, 421
Tru9I TTAA 3 cut(s) 102, 404, 421
TscAI CASTG 1 cut(s) 73
TseFI GTSAC 1 cut(s) 187
TseI GCWGC 1 cut(s) 328
Tsp45I GTSAC 1 cut(s) 187
TspDTI ATGAA 4 cut(s) 17, 29, 62, 238
TspRI CASTG 1 cut(s) 73
XagI CCTNNNNNAGG 1 cut(s) 155
XceI RCATGY 4 cut(s) 15, 143, 348, 415
XcmI CCANNNNNNNNNTGG 1 cut(s) 329
XmaJI CCTAGG 1 cut(s) 215
XspI CTAG 2 cut(s) 8, 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.