Domain of unknown function (DUF4228)
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_6g24840 |
| malus_domestica | MD13G1101500.v1.1 |
| prunus_persica | Prupe.1G244300_v2.0.a1 |
| pyrus_communis | pycom13g08860 pycom16g08660 |
| rosa_laevigata | RLG00000006797 |
| rosa_rugosa | Rorug04G0264400 |
| rosa_samantha | Rh4AG318300 Rh4BG326400 Rh4CG341700 Rh4DG321600 |
| rosa_wichuraiana | Rw4G027670 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 167 |
| Acc36I | ACCTGC | 2 cut(s) | 167, 409 |
| AciI | CCGC | 1 cut(s) | 256 |
| AclI | AACGTT | 1 cut(s) | 517 |
| AclWI | GGATC | 2 cut(s) | 82, 437 |
| AcuI | CTGAAG | 3 cut(s) | 26, 118, 426 |
| AfaI | GTAC | 1 cut(s) | 621 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 262, 294, 407, 504 |
| AgsI | TTSAA | 2 cut(s) | 70, 271 |
| AjnI | CCWGG | 3 cut(s) | 35, 238, 316 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 598, 630 |
| AleI | CACNNNNGTG | 1 cut(s) | 177 |
| AluBI | AGCT | 4 cut(s) | 116, 193, 386, 628 |
| AluI | AGCT | 4 cut(s) | 116, 193, 386, 628 |
| Alw21I | GWGCWC | 1 cut(s) | 118 |
| Alw26I | GTCTC | 2 cut(s) | 423, 614 |
| AlwI | GGATC | 2 cut(s) | 82, 437 |
| AoxI | GGCC | 3 cut(s) | 28, 296, 390 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 11 |
| AspS9I | GGNCC | 2 cut(s) | 296, 390 |
| AxyI | CCTNAGG | 1 cut(s) | 279 |
| BanII | GRGCYC | 1 cut(s) | 118 |
| BbsI | GAAGAC | 2 cut(s) | 61, 578 |
| Bbv12I | GWGCWC | 1 cut(s) | 118 |
| BccI | CCATC | 3 cut(s) | 220, 419, 591 |
| BciT130I | CCWGG | 3 cut(s) | 37, 240, 318 |
| BciVI | GTATCC | 1 cut(s) | 246 |
| BcoDI | GTCTC | 2 cut(s) | 423, 614 |
| BfaI | CTAG | 3 cut(s) | 32, 387, 468 |
| BfmI | CTRYAG | 1 cut(s) | 348 |
| BfuAI | ACCTGC | 2 cut(s) | 167, 409 |
| BfuI | GTATCC | 1 cut(s) | 246 |
| Bme1390I | CCNGG | 3 cut(s) | 37, 240, 318 |
| BmgT120I | GGNCC | 2 cut(s) | 296, 390 |
| BmiI | GGNNCC | 1 cut(s) | 603 |
| BmrFI | CCNGG | 3 cut(s) | 37, 240, 318 |
| BmsI | GCATC | 1 cut(s) | 224 |
| BpiI | GAAGAC | 2 cut(s) | 61, 578 |
| BpmI | CTGGAG | 1 cut(s) | 405 |
| BsaJI | CCNNGG | 2 cut(s) | 239, 498 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 517, 547 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 262, 294, 407, 504 |
| Bse1I | ACTGG | 1 cut(s) | 19 |
| Bse21I | CCTNAGG | 1 cut(s) | 279 |
| BseBI | CCWGG | 3 cut(s) | 37, 240, 318 |
| BseDI | CCNNGG | 2 cut(s) | 239, 498 |
| BseGI | GGATG | 3 cut(s) | 15, 249, 602 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 262, 294, 407, 504 |
| BseMII | CTCAG | 1 cut(s) | 293 |
| BseNI | ACTGG | 1 cut(s) | 19 |
| BseRI | GAGGAG | 2 cut(s) | 203, 317 |
| BsgI | GTGCAG | 1 cut(s) | 374 |
| BshFI | GGCC | 3 cut(s) | 30, 298, 392 |
| BsiHKAI | GWGCWC | 1 cut(s) | 118 |
| BslFI | GGGAC | 2 cut(s) | 271, 467 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 262, 294, 407, 504 |
| BsmAI | GTCTC | 2 cut(s) | 423, 614 |
| BsmFI | GGGAC | 2 cut(s) | 271, 467 |
| BsmI | GAATGC | 1 cut(s) | 445 |
| BsnI | GGCC | 3 cut(s) | 30, 298, 392 |
| Bsp1286I | GDGCHC | 1 cut(s) | 118 |
| Bsp1407I | TGTACA | 1 cut(s) | 619 |
| Bsp143I | GATC | 3 cut(s) | 74, 92, 429 |
| BspACI | CCGC | 1 cut(s) | 256 |
| BspANI | GGCC | 3 cut(s) | 30, 298, 392 |
| BspCNI | CTCAG | 1 cut(s) | 292 |
| BspLI | GGNNCC | 1 cut(s) | 603 |
| BspMI | ACCTGC | 2 cut(s) | 167, 409 |
| BspPI | GGATC | 2 cut(s) | 82, 437 |
| BsrGI | TGTACA | 1 cut(s) | 619 |
| BsrI | ACTGG | 1 cut(s) | 19 |
| BssECI | CCNNGG | 2 cut(s) | 239, 498 |
| BssMI | GATC | 3 cut(s) | 74, 92, 429 |
| BssT1I | CCWWGG | 1 cut(s) | 498 |
| Bst2UI | CCWGG | 3 cut(s) | 37, 240, 318 |
| Bst4CI | ACNGT | 4 cut(s) | 50, 66, 144, 352 |
| Bst6I | CTCTTC | 1 cut(s) | 2 |
| BstAUI | TGTACA | 1 cut(s) | 619 |
| BstC8I | GCNNGC | 1 cut(s) | 256 |
| BstDEI | CTNAG | 1 cut(s) | 279 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 405 |
| BstF5I | GGATG | 3 cut(s) | 15, 249, 602 |
| BstKTI | GATC | 3 cut(s) | 77, 95, 432 |
| BstMAI | GTCTC | 2 cut(s) | 423, 614 |
| BstMBI | GATC | 3 cut(s) | 74, 92, 429 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 190, 255 |
| BstNI | CCWGG | 3 cut(s) | 37, 240, 318 |
| BstSCI | CCNGG | 3 cut(s) | 35, 238, 316 |
| BstSFI | CTRYAG | 1 cut(s) | 348 |
| BstV2I | GAAGAC | 2 cut(s) | 61, 578 |
| BstX2I | RGATCY | 1 cut(s) | 74 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 127, 179 |
| BstYI | RGATCY | 1 cut(s) | 74 |
| Bsu36I | CCTNAGG | 1 cut(s) | 279 |
| BsuI | GTATCC | 1 cut(s) | 246 |
| BsuRI | GGCC | 3 cut(s) | 30, 298, 392 |
| BtsCI | GGATG | 3 cut(s) | 15, 249, 602 |
| BtsIMutI | CAGTG | 2 cut(s) | 55, 357 |
| BveI | ACCTGC | 2 cut(s) | 167, 409 |
| Cac8I | GCNNGC | 1 cut(s) | 256 |
| Cfr13I | GGNCC | 2 cut(s) | 296, 390 |
| Csp6I | GTAC | 1 cut(s) | 620 |
| CviAII | CATG | 3 cut(s) | 374, 582, 636 |
| CviQI | GTAC | 1 cut(s) | 620 |
| DdeI | CTNAG | 1 cut(s) | 279 |
| DpnI | GATC | 3 cut(s) | 76, 94, 431 |
| DpnII | GATC | 3 cut(s) | 74, 92, 429 |
| Eam1104I | CTCTTC | 1 cut(s) | 2 |
| EarI | CTCTTC | 1 cut(s) | 2 |
| Ecl136II | GAGCTC | 1 cut(s) | 116 |
| Eco130I | CCWWGG | 1 cut(s) | 498 |
| Eco147I | AGGCCT | 1 cut(s) | 30 |
| Eco24I | GRGCYC | 1 cut(s) | 118 |
| Eco53kI | GAGCTC | 1 cut(s) | 116 |
| Eco57I | CTGAAG | 3 cut(s) | 26, 118, 426 |
| Eco81I | CCTNAGG | 1 cut(s) | 279 |
| EcoICRI | GAGCTC | 1 cut(s) | 116 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 405 |
| EcoRII | CCWGG | 3 cut(s) | 35, 238, 316 |
| EcoT14I | CCWWGG | 1 cut(s) | 498 |
| EcoT38I | GRGCYC | 1 cut(s) | 118 |
| ErhI | CCWWGG | 1 cut(s) | 498 |
| FaeI | CATG | 3 cut(s) | 377, 585, 639 |
| FaiI | YATR | 9 cut(s) | 83, 122, 333, 335, 369, 375, 492, 583, 637 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 598, 630 |
| FaqI | GGGAC | 2 cut(s) | 271, 467 |
| FatI | CATG | 3 cut(s) | 373, 581, 635 |
| FauI | CCCGC | 1 cut(s) | 263 |
| FokI | GGATG | 3 cut(s) | 2, 256, 609 |
| FriOI | GRGCYC | 1 cut(s) | 118 |
| FspBI | CTAG | 3 cut(s) | 32, 387, 468 |
| GsuI | CTGGAG | 1 cut(s) | 405 |
| HaeIII | GGCC | 3 cut(s) | 30, 298, 392 |
| Hin1II | CATG | 3 cut(s) | 377, 585, 639 |
| HinfI | GANTC | 3 cut(s) | 284, 416, 464 |
| Hpy166II | GTNNAC | 3 cut(s) | 140, 172, 521 |
| Hpy188I | TCNGA | 3 cut(s) | 201, 324, 478 |
| Hpy188III | TCNNGA | 3 cut(s) | 281, 422, 568 |
| Hpy8I | GTNNAC | 3 cut(s) | 140, 172, 521 |
| HpyAV | CCTTC | 1 cut(s) | 401 |
| HpyCH4III | ACNGT | 4 cut(s) | 50, 66, 144, 352 |
| HpyCH4IV | ACGT | 1 cut(s) | 517 |
| HpyCH4V | TGCA | 4 cut(s) | 98, 215, 355, 443 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 190, 255 |
| HpyF3I | CTNAG | 1 cut(s) | 279 |
| HpySE526I | ACGT | 1 cut(s) | 517 |
| Hsp92II | CATG | 3 cut(s) | 377, 585, 639 |
| Kzo9I | GATC | 3 cut(s) | 74, 92, 429 |
| LmnI | GCTCC | 4 cut(s) | 113, 121, 190, 601 |
| LweI | GCATC | 1 cut(s) | 224 |
| MaeI | CTAG | 3 cut(s) | 32, 387, 468 |
| MaeII | ACGT | 1 cut(s) | 517 |
| MalI | GATC | 3 cut(s) | 76, 94, 431 |
| MboI | GATC | 3 cut(s) | 74, 92, 429 |
| MboII | GAAGA | 4 cut(s) | 19, 66, 160, 583 |
| MflI | RGATCY | 1 cut(s) | 74 |
| MhlI | GDGCHC | 1 cut(s) | 118 |
| MluCI | AATT | 1 cut(s) | 360 |
| MlyI | GAGTC | 2 cut(s) | 293, 425 |
| MnlI | CCTC | 9 cut(s) | 3, 156, 181, 256, 288, 295, 440, 533, 581 |
| MroXI | GAANNNNTTC | 1 cut(s) | 11 |
| MseI | TTAA | 1 cut(s) | 363 |
| MslI | CAYNNNNRTG | 2 cut(s) | 177, 372 |
| MspR9I | CCNGG | 3 cut(s) | 37, 240, 318 |
| Mva1269I | GAATGC | 1 cut(s) | 445 |
| MvaI | CCWGG | 3 cut(s) | 37, 240, 318 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 190, 255 |
| NdeII | GATC | 3 cut(s) | 74, 92, 429 |
| NlaIII | CATG | 3 cut(s) | 377, 585, 639 |
| NlaIV | GGNNCC | 1 cut(s) | 603 |
| OliI | CACNNNNGTG | 1 cut(s) | 177 |
| PaqCI | CACCTGC | 1 cut(s) | 167 |
| PceI | AGGCCT | 1 cut(s) | 30 |
| PctI | GAATGC | 1 cut(s) | 445 |
| PdmI | GAANNNNTTC | 1 cut(s) | 11 |
| PfeI | GAWTC | 1 cut(s) | 464 |
| PleI | GAGTC | 2 cut(s) | 292, 424 |
| PpsI | GAGTC | 2 cut(s) | 292, 424 |
| Psp124BI | GAGCTC | 1 cut(s) | 118 |
| Psp1406I | AACGTT | 1 cut(s) | 517 |
| Psp6I | CCWGG | 3 cut(s) | 35, 238, 316 |
| PspGI | CCWGG | 3 cut(s) | 35, 238, 316 |
| PspN4I | GGNNCC | 1 cut(s) | 603 |
| PspPI | GGNCC | 2 cut(s) | 296, 390 |
| PsuI | RGATCY | 1 cut(s) | 74 |
| RsaI | GTAC | 1 cut(s) | 621 |
| RsaNI | GTAC | 1 cut(s) | 620 |
| RseI | CAYNNNNRTG | 2 cut(s) | 177, 372 |
| SacI | GAGCTC | 1 cut(s) | 118 |
| SaqAI | TTAA | 1 cut(s) | 363 |
| Sau3AI | GATC | 3 cut(s) | 74, 92, 429 |
| Sau96I | GGNCC | 2 cut(s) | 296, 390 |
| SchI | GAGTC | 2 cut(s) | 293, 425 |
| ScrFI | CCNGG | 3 cut(s) | 37, 240, 318 |
| SduI | GDGCHC | 1 cut(s) | 118 |
| SfaNI | GCATC | 1 cut(s) | 224 |
| SfcI | CTRYAG | 1 cut(s) | 348 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 177, 372 |
| Sse9I | AATT | 1 cut(s) | 360 |
| SseBI | AGGCCT | 1 cut(s) | 30 |
| SsiI | CCGC | 1 cut(s) | 256 |
| SspI | AATATT | 1 cut(s) | 154 |
| SspMI | CTAG | 3 cut(s) | 32, 387, 468 |
| SstI | GAGCTC | 1 cut(s) | 118 |
| StuI | AGGCCT | 1 cut(s) | 30 |
| StyD4I | CCNGG | 3 cut(s) | 35, 238, 316 |
| StyI | CCWWGG | 1 cut(s) | 498 |
| TaaI | ACNGT | 4 cut(s) | 50, 66, 144, 352 |
| TaiI | ACGT | 1 cut(s) | 520 |
| TaqI | TCGA | 1 cut(s) | 146 |
| TasI | AATT | 1 cut(s) | 360 |
| TatI | WGTACW | 1 cut(s) | 619 |
| TfiI | GAWTC | 1 cut(s) | 464 |
| Tru1I | TTAA | 1 cut(s) | 363 |
| Tru9I | TTAA | 1 cut(s) | 363 |
| TscAI | CASTG | 2 cut(s) | 55, 357 |
| TspDTI | ATGAA | 4 cut(s) | 4, 102, 390, 477 |
| TspGWI | ACGGA | 1 cut(s) | 538 |
| TspRI | CASTG | 2 cut(s) | 55, 357 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 405 |
| XmnI | GAANNNNTTC | 1 cut(s) | 11 |
| XspI | CTAG | 3 cut(s) | 32, 387, 468 |